Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC109A Gene 0 75.08 64.47 71.93 31.39 53.09 64.57 48.89 44.19 34.36 27.14 67.12 102.57 68.71 105.07 80.84 88.94 52.52 33.39 33.15 31.98 102.47 60.85 32.71 2 373053 Transcript 0 22.86 41.97 25.73 23.02 24.99 33.47 25.45 17.30 23.00 13.16 50.39 47.03 102.25 105.23 50.33 76.83 55.04 38.42 34.20 32.14 133.68 33.55 22.30 3 357157 Transcript 0 2.20 1.06 2.47 1.03 1.39 0.00 0.91 1.34 0.63 0.59 0.00 0.00 1.34 0.43 1.07 4.07 0.57 0.48 1.66 0.37 0.76 0.00 0.48 4 483185 Transcript 0 6.24 6.55 5.72 3.46 5.98 7.28 9.01 4.31 3.36 2.30 0.92 10.22 11.70 1.40 2.41 6.10 1.67 0.70 1.55 2.41 4.74 5.77 1.16 5 ER1a ExonRegion 0 0.00 0.31 0.00 0.00 0.00 3.39 1.32 1.33 0.95 0.09 0.00 0.00 0.00 0.50 0.00 1.83 0.00 0.14 1.96 0.00 2.71 1.12 0.00 6 ER1b ExonRegion 0 20.60 10.27 2.47 0.68 2.62 18.78 9.61 1.64 2.49 3.22 9.60 0.11 0.59 23.33 13.66 23.83 8.73 2.53 3.87 6.48 38.51 9.56 16.04 7 E1a_E2a KnownJunction 0 2.89 3.29 3.87 0.00 0.00 10.62 7.68 5.87 4.37 4.81 28.43 10.80 14.77 9.71 14.46 12.22 12.53 1.74 8.66 5.75 84.94 5.27 8.02 8 I1_AR4 ActiveIntronRegion 0 10.10 16.21 24.57 3.63 7.72 1.01 13.65 8.44 6.39 3.70 1.71 12.99 2.39 1.66 5.80 2.23 7.01 1.58 3.38 6.45 4.34 0.00 2.17 9 I1_SR5 SilentIntronRegion 0 15.12 15.16 10.75 4.75 5.62 0.67 10.90 10.18 8.18 3.98 2.41 14.02 9.32 0.56 10.60 8.71 5.38 0.58 4.08 6.38 3.10 0.00 7.71 10 I1_AR5 ActiveIntronRegion 0 7.93 9.94 12.33 4.44 18.82 2.15 17.37 10.96 3.88 3.39 1.40 8.23 11.47 1.41 9.81 12.04 7.70 1.52 0.94 6.77 1.16 0.35 2.08 11 I1_AR6 ActiveIntronRegion 0 12.46 13.48 11.04 4.70 4.94 1.68 10.32 14.68 5.30 5.37 5.95 10.41 11.97 9.31 13.68 25.24 6.12 2.96 7.08 10.66 12.61 1.81 9.54 12 I1_AR13 ActiveIntronRegion 0 20.03 26.68 6.47 6.12 7.16 1.27 9.80 12.02 7.89 5.40 0.12 10.68 5.84 1.88 13.06 6.73 3.21 0.54 0.72 4.40 1.49 0.70 2.96 13 I1_AR14 ActiveIntronRegion 0 29.47 11.39 8.27 5.19 9.04 1.66 12.44 9.97 6.67 6.75 0.48 9.65 12.48 1.94 10.52 8.82 4.35 3.03 2.36 4.73 2.72 1.03 5.80 14 ER2a ExonRegion 0 6.08 17.72 12.10 8.49 8.29 20.62 11.65 13.85 18.65 14.80 39.35 25.79 13.74 74.01 28.72 37.70 46.26 36.19 24.03 23.65 115.10 20.33 28.49 15 E2a_E3a KnownJunction 1 9.78 34.47 22.86 11.29 16.38 26.12 25.35 22.47 32.03 11.09 28.95 91.23 26.62 128.14 42.52 89.63 25.71 79.80 36.80 29.08 81.61 44.27 54.12 16 ER3a ExonRegion 0 12.61 14.73 24.61 20.01 16.23 50.13 30.94 36.04 43.64 32.25 74.29 84.69 108.01 143.49 75.75 140.63 84.20 59.90 49.89 46.80 184.02 76.46 66.51 17 E3a_E4b KnownJunction 1 28.08 38.94 47.04 31.83 3.90 52.02 40.41 60.95 50.55 33.66 96.39 85.98 182.29 158.75 67.99 108.26 115.85 66.37 73.79 37.58 233.83 62.89 62.66 18 ER4a ExonRegion 0 6.24 6.55 5.72 3.46 5.98 7.28 9.01 4.31 3.36 2.30 0.92 10.22 11.70 1.40 2.41 6.10 1.67 0.70 1.55 2.41 4.74 5.77 1.16 19 E4_Ab KnownBoundary 0 6.08 6.45 14.72 1.30 4.07 10.33 16.43 2.42 4.98 1.02 0.00 11.70 26.30 0.00 0.00 3.59 4.58 0.00 4.42 2.56 7.35 2.57 0.00 20 ER4b ExonRegion 0 54.72 48.06 45.47 32.42 20.07 35.60 39.80 47.08 63.28 43.60 120.21 147.12 168.39 216.65 110.11 197.16 122.80 76.49 54.30 67.76 277.24 100.21 75.11 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E4a_E6a KnownJunction 0 25.93 49.79 57.15 24.91 23.17 37.93 38.91 51.42 47.11 34.89 86.07 191.31 135.87 164.17 63.17 102.37 87.61 51.11 24.75 48.39 204.85 63.68 12.80 23 E5_Aa NovelBoundary 0 234.63 109.98 119.16 113.90 142.19 99.89 159.43 158.50 115.13 99.04 35.59 6.75 41.39 9.59 18.17 97.15 53.67 170.83 122.07 129.75 20.94 51.86 78.28 24 ER5a ExonRegion 0 6.61 3.17 7.40 3.10 4.18 0.00 2.73 4.02 1.90 1.78 0.00 0.00 4.02 1.29 3.20 12.22 1.72 1.43 4.97 1.11 2.27 0.00 1.44 25 E5_Da NovelBoundary 0 33.86 5.85 6.18 6.76 16.13 0.00 6.36 17.09 4.14 3.98 2.42 0.00 0.00 0.00 4.33 12.30 4.21 3.94 0.00 0.00 7.91 2.63 4.10 26 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E6_Aa NovelBoundary 0 6.37 0.00 2.60 2.00 0.00 7.67 13.03 3.57 0.00 0.00 2.26 0.00 21.91 0.00 5.07 13.07 18.79 0.00 0.00 0.00 3.15 2.63 0.00 28 ER6a ExonRegion 0 34.82 48.55 51.93 32.38 41.04 76.70 43.51 48.11 47.39 27.96 104.10 150.82 168.03 187.60 98.70 167.27 102.87 63.27 62.45 50.12 211.11 62.49 55.06 29 E6_Da KnownBoundary 1 37.93 55.71 44.53 33.83 73.17 79.95 48.84 38.36 36.28 28.93 80.18 98.13 190.25 180.18 103.47 152.44 81.25 57.04 59.86 45.13 162.72 48.62 52.41 30 ER6b ExonRegion 1 31.45 55.01 37.54 34.36 43.66 50.28 30.10 27.93 31.25 22.17 77.59 78.08 169.09 169.68 60.01 125.19 85.07 55.92 44.26 45.54 201.39 53.48 40.44 31 E6b_E7a KnownJunction 0 37.12 70.58 39.65 34.69 31.32 46.73 44.91 22.63 36.81 17.22 73.60 63.02 137.65 145.51 90.98 103.48 80.04 59.20 56.38 50.88 196.95 46.05 26.46 32 ER7a ExonRegion 0 32.18 59.57 43.57 27.00 40.21 50.52 51.40 32.25 35.96 21.58 79.98 90.73 89.00 127.24 68.76 104.71 69.03 53.22 42.83 38.15 161.08 45.32 29.05 33 E7a_E8a KnownJunction 0 52.82 41.37 68.66 41.49 55.52 62.63 69.38 46.13 45.77 30.60 86.65 98.58 60.06 150.22 93.58 86.64 94.62 57.25 63.72 72.67 122.81 63.19 37.22 34 ER8a ExonRegion 0 54.40 60.76 51.63 37.93 69.82 82.29 51.18 43.23 48.76 31.65 96.15 122.22 66.82 133.46 79.33 103.49 86.47 41.14 33.02 46.86 103.91 61.62 48.97 35 E8a_E9a KnownJunction 0 86.02 89.72 65.64 40.09 106.28 136.91 89.78 44.36 50.32 32.93 80.18 123.04 109.90 112.37 75.65 111.77 90.70 40.71 30.59 67.82 114.54 67.48 58.13 36 E9_Aa NovelBoundary 0 23.78 6.51 10.61 16.31 16.04 32.48 8.83 15.85 10.59 1.67 5.32 18.16 6.17 4.36 10.01 12.99 15.61 2.49 0.00 2.43 8.53 8.08 3.41 37 ER9a ExonRegion 0 116.77 93.88 109.82 43.34 78.23 89.09 67.31 61.95 42.19 35.53 82.33 137.18 73.45 121.90 109.74 100.65 56.45 35.40 38.93 36.50 103.03 80.28 35.71 38 IG24_AR1 ActiveIntergenicRegion 0 11.39 7.47 3.13 2.68 3.53 4.34 2.72 1.13 1.59 1.85 0.57 0.90 1.13 0.63 1.93 2.61 0.48 1.19 0.00 4.24 2.31 0.00 0.86