Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCOA4 Gene 0 411.61 477.45 267.33 257.84 417.61 411.33 286.34 316.54 338.22 192.36 565.72 563.17 495.36 604.33 352.26 518.55 460.11 300.43 159.17 258.06 387.98 465.30 351.91 2 330923 Transcript 0 46.92 61.80 29.20 28.85 71.58 111.10 48.32 34.57 47.04 23.32 112.81 57.00 57.06 83.33 31.43 151.33 90.77 75.14 43.53 27.60 80.44 132.82 89.08 3 438493 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 452682 Transcript 0 1.21 0.81 1.40 0.01 2.56 2.85 2.25 0.96 1.06 0.29 2.24 2.14 0.04 2.11 0.42 1.74 3.14 0.00 0.00 1.64 0.00 1.24 1.13 5 430396 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 414907 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 498586 Transcript 0 3.78 3.29 7.60 2.70 12.99 13.29 13.29 3.04 9.98 1.29 2.68 0.00 6.01 2.47 4.57 4.36 4.02 23.13 4.33 6.20 3.15 8.76 16.48 8 374087 Transcript 1 140.62 153.72 86.04 85.14 154.58 212.83 134.92 147.46 203.24 117.25 293.50 89.13 58.11 239.33 102.97 320.17 291.82 515.64 61.74 200.70 318.71 224.18 269.32 9 344348 Transcript 0 8.57 4.20 0.00 0.00 6.01 10.70 2.26 0.00 2.33 0.94 1.58 0.00 0.00 3.46 0.00 2.00 1.24 1.54 3.45 0.10 5.92 8.91 23.54 10 374082 Transcript 0 1.63 2.27 2.75 11.62 0.00 0.92 0.88 4.30 4.95 2.25 3.84 2.63 1.17 3.50 2.90 1.92 0.00 2.40 0.00 0.53 4.39 2.33 0.00 11 431200 Transcript 0 0.00 1.02 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 2.90 0.00 2.35 0.81 0.00 0.00 0.00 1.85 3.19 0.00 0.00 6.25 0.00 12 340589 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 443446 Transcript 0 2.01 0.96 0.43 0.96 3.17 1.74 2.36 0.61 4.80 1.42 1.17 4.37 1.37 0.98 0.59 7.33 3.18 1.85 1.13 7.60 1.82 3.21 7.91 14 ER1a ExonRegion 0 2.20 4.46 0.73 2.38 4.70 23.33 9.09 1.66 1.83 1.29 11.44 0.00 0.00 16.90 2.22 9.07 5.89 9.01 0.10 1.45 16.73 4.34 8.72 15 E1_Ab KnownBoundary 0 10.52 22.76 1.80 4.13 25.04 107.44 47.87 5.09 9.72 3.33 41.38 5.55 0.00 55.57 15.08 47.00 27.96 28.64 0.00 6.14 76.36 24.86 49.68 16 E1_Ac KnownBoundary 0 16.74 37.62 3.46 10.09 41.60 94.95 44.47 3.57 17.48 7.17 49.75 5.70 6.33 142.21 19.41 51.70 42.64 31.42 13.84 27.61 47.01 43.60 63.51 17 ER1b ExonRegion 1 22.61 58.14 5.24 13.75 43.78 151.21 60.42 11.71 22.57 11.83 87.24 4.13 2.56 131.04 20.70 120.64 75.62 59.13 17.52 43.13 108.68 56.26 100.65 18 ER1c ExonRegion 1 224.93 458.35 76.63 75.18 276.18 541.40 274.14 117.18 183.80 109.52 763.55 29.05 45.95 454.24 188.50 879.49 665.68 538.23 240.19 375.98 642.14 391.88 643.08 19 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 6.62 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 2.47 0.00 4.35 20 E1a_E6a KnownJunction 1 140.62 153.72 86.04 85.14 154.58 212.83 134.92 147.46 203.24 117.25 293.50 89.13 58.11 239.33 102.97 320.17 291.82 515.64 61.74 200.70 318.71 224.18 269.32 21 E1a_E7a KnownJunction 0 3.78 3.29 7.60 2.70 12.99 13.29 13.29 3.04 9.98 1.29 2.68 0.00 6.01 2.47 4.57 4.36 4.02 23.13 4.33 6.20 3.15 8.76 16.48 22 ER2a ExonRegion 0 2.27 5.35 1.38 1.03 2.87 1.93 2.48 1.35 4.18 0.06 1.65 1.87 2.03 1.16 1.17 1.56 0.00 3.47 5.02 7.87 0.68 1.07 2.21 23 E2a_E6a KnownJunction 0 0.00 0.00 1.83 1.83 0.00 0.00 0.00 0.00 5.21 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.07 0.00 0.00 2.72 0.00 0.00 24 ER3a ExonRegion 0 8.57 4.20 0.00 0.00 6.01 10.70 2.26 0.00 2.33 0.94 1.58 0.00 0.00 3.46 0.00 2.00 1.24 1.54 3.45 0.10 5.92 8.91 23.54 25 E3_Ab KnownBoundary 0 14.30 8.09 0.00 1.86 12.22 20.67 8.44 3.74 4.60 1.56 5.32 0.00 0.00 9.71 0.00 3.59 4.77 2.36 4.33 0.00 11.37 11.27 27.74 26 ER3b ExonRegion 0 37.90 0.84 0.00 1.43 8.52 34.42 12.20 5.29 9.31 5.75 2.29 0.00 0.14 5.90 0.04 5.94 9.34 1.96 4.41 4.91 17.39 17.98 19.38 27 E3a_E6a KnownJunction 0 43.42 0.00 1.27 8.62 16.55 35.55 12.63 23.25 37.35 9.89 5.37 0.00 0.00 0.00 0.00 12.39 0.00 1.53 0.00 0.00 3.03 17.15 0.00 28 ER4a ExonRegion 0 0.00 1.02 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 2.90 0.00 2.35 0.81 0.00 0.00 0.00 1.85 3.19 0.00 0.00 6.25 0.00 29 ER4b ExonRegion 0 3.74 4.56 0.00 0.12 3.51 0.05 4.17 0.09 0.15 0.00 4.45 17.39 10.40 8.57 10.34 1.34 5.86 0.93 2.77 3.81 1.09 6.40 6.54 30 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 4.02 1.93 0.87 1.93 6.35 3.48 4.71 1.22 9.61 2.84 2.34 8.74 2.75 1.96 1.17 7.23 6.36 3.70 2.27 12.26 3.65 6.42 11.47 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.43 0.00 0.00 0.00 2.94 0.00 0.00 4.35 33 ER6a ExonRegion 1 34.51 51.99 58.58 71.53 39.51 64.75 32.16 123.70 181.53 100.21 591.23 129.10 96.86 374.20 117.47 392.72 507.49 300.47 122.61 235.37 527.72 257.11 321.23 34 E6a_E7a KnownJunction 1 35.04 65.51 133.35 164.88 60.36 123.68 57.46 206.23 321.64 182.23 492.55 277.44 247.06 754.67 285.93 1475.42 437.77 812.61 390.98 456.43 423.17 687.59 1057.31 35 ER7a ExonRegion 0 43.29 161.01 121.03 138.82 232.20 398.73 170.96 202.01 286.14 132.24 538.21 379.55 264.04 569.48 184.49 627.01 459.18 506.89 135.32 303.83 496.80 464.61 459.16 36 E7a_E8a KnownJunction 0 46.97 566.87 153.31 186.26 176.91 502.67 330.29 238.19 308.10 184.46 794.67 574.69 340.56 709.11 243.03 489.44 732.12 472.24 174.22 343.94 765.11 544.43 331.89 37 ER8a ExonRegion 1 110.18 389.08 124.30 133.93 119.66 389.38 167.79 215.44 291.75 175.03 730.55 563.85 358.60 726.38 180.27 499.95 629.58 443.67 126.56 280.61 708.63 449.60 354.71 38 E8a_E9a KnownJunction 0 189.37 288.83 122.32 158.65 196.10 344.01 125.47 237.20 278.50 156.61 734.66 639.06 383.58 803.94 246.00 580.79 583.92 487.45 115.11 299.26 791.18 463.97 379.52 39 ER9a ExonRegion 1 210.41 243.82 157.94 177.14 151.63 291.07 145.25 286.45 360.43 210.96 781.71 669.36 575.76 1033.95 290.36 822.24 649.49 777.21 180.92 353.87 731.07 661.60 629.73 40 E9a_E10a KnownJunction 1 135.73 349.15 169.45 183.99 140.32 288.81 164.24 307.89 422.85 238.48 756.14 660.52 542.82 1222.68 347.24 757.41 656.10 618.36 252.52 349.82 763.69 656.06 488.62 41 ER10a ExonRegion 1 113.14 271.05 132.72 143.48 115.56 233.10 132.73 223.68 308.20 175.46 683.82 534.02 481.67 836.37 211.63 514.41 626.95 409.61 131.63 288.39 745.34 423.02 390.18 42 E10a_E11a KnownJunction 1 108.91 315.86 110.58 107.91 123.09 218.00 145.96 179.37 258.50 150.70 490.97 432.74 334.23 799.11 186.91 436.12 582.05 379.96 90.26 274.84 578.11 400.53 353.74 43 ER11a ExonRegion 1 119.63 458.46 133.43 151.10 170.32 367.33 209.60 197.96 311.44 182.10 584.10 477.11 539.35 925.69 232.50 585.69 588.77 339.25 154.45 260.05 653.87 468.84 424.20 44 E11a_E12a KnownJunction 0 178.48 569.37 117.97 186.49 251.53 426.74 302.65 240.04 320.34 186.34 692.75 647.16 746.70 809.76 249.21 644.70 626.93 379.09 183.63 298.88 589.97 473.89 518.67 45 E11a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER12a ExonRegion 1 145.25 433.48 151.39 213.86 312.12 416.39 272.52 308.17 361.26 225.98 690.64 607.56 635.78 900.15 213.82 666.04 563.93 391.76 178.66 300.94 504.67 484.84 480.11 47 E12_Da KnownBoundary 0 159.36 512.01 165.40 218.22 327.93 350.93 229.25 370.94 363.62 189.67 608.42 592.54 621.39 629.59 241.55 638.98 594.76 479.33 169.13 357.74 562.24 492.56 469.58 48 ER12b ExonRegion 0 164.42 465.08 193.01 219.88 264.86 353.64 225.69 363.60 432.75 230.39 807.30 648.62 620.56 885.46 260.51 686.88 723.51 408.86 201.83 336.56 704.59 572.47 478.09 49 E12_Db KnownBoundary 0 304.79 493.60 218.18 242.66 368.85 400.00 356.35 370.53 394.76 236.49 708.65 725.64 705.64 908.36 298.66 891.30 604.39 512.20 183.82 398.27 757.45 554.59 482.90 50 ER12c ExonRegion 0 250.34 451.81 264.83 282.94 394.83 564.87 312.31 356.10 467.89 258.66 872.31 688.21 647.14 1003.36 363.57 973.70 731.21 577.36 257.91 362.50 679.05 751.83 589.47 51 E12_Dc KnownBoundary 0 341.76 482.22 178.41 221.75 379.46 447.30 244.79 291.09 398.61 176.59 653.80 261.24 264.92 448.76 258.73 993.84 530.15 476.18 351.73 326.43 614.68 1158.29 684.61 52 E12c_E13b KnownJunction 0 3.26 2.50 1.83 14.38 0.00 0.00 1.77 2.55 6.19 1.64 7.69 5.25 0.00 7.00 0.00 3.85 0.00 4.81 0.00 0.00 8.77 4.65 0.00 53 E12_Dd KnownBoundary 1 116.61 178.92 146.80 119.86 165.70 163.14 89.96 221.55 210.44 111.42 673.54 193.86 168.82 319.09 101.37 333.25 492.29 184.84 161.13 121.12 409.15 406.41 209.82 54 E12d_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER12d ExonRegion 0 392.97 589.74 358.63 350.72 550.31 604.54 338.05 540.43 642.26 324.57 1538.59 861.56 903.61 1667.97 633.44 1528.66 1172.92 779.75 543.64 451.77 1134.18 1690.43 969.09 56 ER12e ExonRegion 0 214.44 407.48 267.33 244.86 414.86 509.02 277.53 363.14 448.76 236.40 949.02 689.98 551.94 992.51 347.84 784.84 759.08 539.83 233.78 287.25 798.32 613.24 452.53 57 E12e_E13b KnownJunction 0 247.67 508.13 417.25 404.88 612.56 663.25 360.19 497.41 621.15 316.27 829.63 623.00 512.79 860.38 348.60 777.83 573.07 900.28 265.42 281.49 601.77 923.22 486.40 58 ER13a ExonRegion 0 140.75 184.04 87.61 86.54 214.73 333.29 144.97 103.71 141.11 69.96 337.77 171.01 171.19 248.90 94.29 453.99 272.32 225.43 130.60 81.38 241.31 398.47 267.23 59 ER13b ExonRegion 0 329.19 552.78 302.03 324.19 589.07 765.89 404.78 353.80 485.98 239.38 1024.73 720.08 633.39 1131.04 494.02 1244.88 836.64 636.88 375.53 344.88 710.32 956.20 760.88 60 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E13a_E15a KnownJunction 0 293.39 554.24 294.87 402.41 575.04 548.43 393.71 307.52 442.67 256.48 941.29 715.28 734.69 992.53 446.38 682.21 748.57 329.31 209.23 376.98 552.78 567.45 451.74 62 ER13c ExonRegion 0 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 63 ER14a ExonRegion 0 3.64 2.42 4.19 0.02 7.67 8.55 6.75 2.87 3.19 0.88 6.73 6.42 0.11 6.33 1.27 5.21 9.42 0.00 0.00 4.92 0.00 3.72 3.40 64 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 E15_Aa NovelBoundary 0 116.24 71.57 73.71 56.94 100.76 67.57 96.45 60.26 52.34 42.47 36.17 68.87 66.88 42.50 36.71 41.61 30.39 35.24 68.24 95.75 35.95 33.13 50.79 66 ER15a ExonRegion 0 916.15 844.89 504.29 453.46 788.53 580.42 488.44 518.07 462.57 271.52 587.77 854.84 729.81 574.36 622.43 455.55 439.43 198.58 176.29 309.68 245.33 541.95 318.44 67 ER15b ExonRegion 0 52.91 20.34 7.35 29.98 13.38 18.34 10.59 12.10 9.88 8.03 1.93 12.99 14.07 3.25 17.41 11.89 9.90 0.00 6.37 4.26 0.00 6.25 11.75 68 ER15c ExonRegion 0 0.00 2.03 3.68 8.86 0.00 1.83 0.00 6.05 3.71 2.87 0.00 0.00 2.35 0.00 5.80 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 69 IG48 Intergenic 0 14.32 36.77 10.58 13.46 25.67 18.48 20.47 15.64 10.29 12.85 7.74 26.66 15.18 9.93 9.73 10.46 10.94 13.07 12.09 33.04 5.63 11.07 10.74 70 IG48_AR1 ActiveIntergenicRegion 0 20.39 62.20 12.95 18.01 28.76 15.92 27.13 19.35 14.34 18.50 9.36 40.55 20.59 12.53 11.18 10.67 11.24 9.14 10.31 47.65 6.12 14.90 9.21 71 IG48_SR1 SilentIntergenicRegion 0 11.03 9.98 10.07 9.12 25.63 24.48 14.93 14.72 7.82 9.02 8.40 10.15 6.25 8.86 7.15 12.97 8.46 23.76 16.27 21.40 6.36 8.27 16.07 72 IG48_AR3 ActiveIntergenicRegion 0 2.61 14.34 6.09 10.61 21.05 14.73 14.34 6.11 3.99 3.84 0.35 13.93 12.66 7.09 8.08 4.26 18.98 5.02 6.64 10.00 3.23 6.08 1.81 73 IG48_AR4 ActiveIntergenicRegion 0 2.67 12.80 3.05 6.32 12.46 14.19 8.81 6.74 2.15 3.25 2.82 21.58 20.84 1.54 13.08 5.55 11.42 2.64 11.85 14.82 2.28 4.34 7.94