Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ECD Gene 0 83.14 111.42 81.50 74.47 87.07 103.97 95.82 85.99 95.90 59.67 195.27 202.15 148.49 200.05 146.50 160.90 181.63 96.52 91.85 98.25 90.22 117.73 78.96 2 453402 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 430082 Transcript 0 0.43 0.35 0.00 0.37 0.97 0.34 0.03 0.01 0.89 0.01 0.01 1.87 0.00 0.04 2.17 0.03 0.58 0.93 1.09 0.00 0.00 0.02 0.50 4 454759 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 413026 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 372979 Transcript 1 67.47 91.49 56.90 84.48 58.88 58.28 68.55 57.34 52.02 39.73 36.27 99.82 103.76 47.99 62.23 53.22 37.99 22.06 43.38 56.75 14.19 55.56 25.44 7 484976 Transcript 0 0.00 0.00 3.19 0.00 0.00 0.00 1.81 2.26 1.59 1.56 7.21 13.20 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 8 494307 Transcript 1 11.12 17.85 7.33 7.48 12.95 9.82 17.77 13.00 10.61 12.29 3.40 14.26 25.40 12.76 20.28 26.31 12.39 16.82 16.10 18.51 13.21 5.39 18.86 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 9.60 0.00 0.00 3.57 4.83 5.96 0.00 4.51 0.00 8.48 0.00 6.01 9.65 5.81 3.85 3.83 0.00 0.00 3.26 0.00 0.00 4.10 11 ER1b ExonRegion 0 0.78 6.31 0.00 0.07 2.39 3.19 5.57 0.00 1.30 0.00 4.88 0.00 0.00 7.18 2.60 0.31 2.61 0.00 0.00 3.25 1.74 0.00 3.55 12 ER1c ExonRegion 1 59.08 59.56 20.53 12.35 44.56 84.96 74.76 13.15 36.35 14.54 105.95 5.76 5.88 116.34 70.74 123.57 131.81 40.90 42.08 45.80 78.74 61.98 71.70 13 E1_Ad KnownBoundary 1 90.02 99.19 50.97 44.12 49.49 131.52 66.16 43.25 119.56 40.00 119.56 18.91 6.98 67.10 44.63 114.67 172.79 159.26 87.81 73.70 70.55 98.83 97.91 14 ER1d ExonRegion 1 19.11 30.53 18.64 11.68 8.88 23.67 16.38 16.98 45.27 20.52 78.99 29.90 12.26 43.01 29.28 40.82 99.60 18.60 22.30 28.11 51.36 42.70 31.09 15 E1a_E2a KnownJunction 1 31.26 19.27 11.65 14.58 12.48 2.50 13.51 24.60 59.78 25.63 171.10 43.36 6.33 102.18 52.91 55.20 141.09 31.63 18.26 40.40 86.18 48.31 19.89 16 E1a_E3a KnownJunction 0 0.00 0.00 1.42 0.00 0.00 6.93 0.00 0.00 1.13 1.40 0.00 6.30 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I1 Intron 0 24.38 15.07 10.18 6.56 13.74 4.71 7.77 8.32 11.21 3.26 0.99 5.34 9.76 0.79 2.04 3.71 3.88 3.31 4.91 6.09 1.78 0.76 2.15 18 I1_SR1 SilentIntronRegion 0 33.73 14.29 11.73 7.40 19.13 6.25 10.77 7.86 8.50 3.64 0.47 7.38 9.53 0.78 2.03 3.09 3.60 2.51 4.01 5.09 1.23 0.64 1.68 19 ER2a ExonRegion 0 32.86 83.93 69.89 54.79 70.72 98.86 86.87 73.40 139.99 55.51 273.19 184.28 135.06 234.42 135.76 173.05 271.32 107.73 74.39 117.82 105.37 135.07 100.57 20 E2a_E3a KnownJunction 0 23.63 168.06 75.75 83.04 123.85 179.21 204.08 102.77 173.84 75.43 259.12 317.05 273.03 305.20 148.59 138.51 266.57 60.19 100.61 109.75 81.55 155.17 69.57 21 ER3a ExonRegion 0 71.17 161.03 104.06 115.41 120.45 121.93 111.90 147.89 214.37 83.23 389.12 455.22 297.46 333.58 179.63 233.01 317.53 105.57 128.04 168.77 97.86 304.21 122.59 22 E3a_E4a KnownJunction 0 103.43 160.23 90.65 119.37 131.58 86.94 97.20 176.21 250.08 101.86 439.43 422.39 241.06 391.08 198.03 265.23 375.13 116.69 178.83 207.60 79.63 326.19 141.87 23 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4a ExonRegion 0 107.19 135.97 103.37 121.14 121.49 104.76 97.25 168.47 261.61 101.25 454.38 572.31 343.56 342.09 185.75 240.25 342.12 119.36 162.78 192.19 103.43 243.03 107.06 25 E4_Da NovelBoundary 0 0.00 2.96 10.41 9.62 7.98 0.00 9.85 4.07 7.99 2.74 2.68 6.30 0.00 0.00 0.00 4.36 4.02 10.90 35.39 5.31 2.97 15.25 3.59 26 E4a_E5a KnownJunction 0 75.87 177.53 96.83 119.00 117.15 107.72 142.56 152.02 186.14 75.35 418.11 580.24 493.15 315.26 179.37 225.24 274.71 66.16 94.50 158.64 107.00 205.19 81.61 27 ER4b ExonRegion 0 69.85 135.80 92.45 114.48 105.54 110.23 120.48 147.30 208.60 75.82 404.19 606.13 425.75 324.28 147.32 249.66 259.30 90.33 112.55 157.68 107.49 207.43 83.20 28 ER5a ExonRegion 0 95.50 172.60 75.89 76.95 118.24 125.43 137.46 144.45 186.32 86.17 347.70 411.86 261.10 344.30 153.59 265.48 289.87 144.67 148.77 147.81 144.53 250.93 124.86 29 E5a_E6a KnownJunction 0 126.02 149.12 36.43 48.91 108.49 116.01 157.48 105.77 115.68 73.09 285.91 237.23 167.36 302.26 122.26 176.36 244.88 118.81 94.97 110.51 166.86 145.31 83.83 30 E5a_E7a KnownJunction 0 0.00 0.00 3.19 0.00 0.00 0.00 1.81 2.26 1.59 1.56 7.21 13.20 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 31 I5_AR3 ActiveIntronRegion 0 9.64 0.00 7.35 3.94 17.84 1.63 20.01 4.42 4.94 0.13 5.80 0.00 2.61 0.00 0.00 4.29 3.30 2.46 3.19 6.38 0.00 2.08 0.00 32 I5_SR2 SilentIntronRegion 0 10.58 2.24 8.82 6.54 18.73 3.67 14.30 6.91 7.16 1.15 3.09 0.00 4.69 0.00 1.16 2.97 3.30 1.85 4.78 6.38 0.00 2.92 0.00 33 I5_AR4 ActiveIntronRegion 0 10.58 4.07 9.80 9.54 18.28 3.67 10.59 8.64 8.65 1.15 0.00 0.00 4.69 0.00 2.90 2.97 3.30 2.46 6.37 5.67 0.00 4.17 0.00 34 E6_Aa NovelBoundary 0 32.67 3.35 4.91 5.99 61.88 8.69 29.28 5.87 4.75 1.40 4.47 6.30 14.93 0.00 0.00 8.03 17.30 12.89 4.80 6.52 0.00 3.12 0.00 35 ER6a ExonRegion 0 84.34 120.92 79.53 55.58 72.59 111.04 93.41 91.47 113.43 54.32 247.33 180.31 146.30 271.02 138.80 162.38 219.71 118.88 110.23 118.51 167.77 136.54 88.90 36 E6_Da KnownBoundary 1 73.57 88.73 106.44 79.58 76.99 65.47 75.34 87.28 138.97 78.06 302.08 89.58 96.42 330.22 208.17 201.06 306.40 176.38 99.77 131.73 194.29 110.71 114.22 37 ER6b ExonRegion 0 54.95 130.75 122.04 70.54 80.72 99.91 92.48 77.56 126.37 62.08 293.94 155.38 89.98 380.89 196.43 259.13 216.94 186.79 139.21 152.21 191.31 131.49 132.80 38 E6b_E7a KnownJunction 1 91.65 164.44 154.22 68.56 147.62 135.15 115.66 86.21 127.63 46.71 338.24 257.03 94.47 409.09 236.73 261.73 187.00 180.28 152.47 176.35 151.05 146.41 103.03 39 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER7a ExonRegion 0 98.45 150.16 116.73 70.48 105.09 144.46 117.28 74.10 127.54 59.31 288.99 176.65 136.87 325.08 211.33 203.32 268.33 186.79 128.88 139.45 145.97 146.18 105.72 41 E7_Da KnownBoundary 0 103.87 153.39 94.64 71.02 99.58 204.03 162.43 80.75 118.78 64.36 171.62 119.14 102.75 229.86 201.13 132.19 245.63 145.75 108.80 130.45 143.45 165.21 54.97 42 ER7b ExonRegion 0 70.44 114.19 99.60 70.28 112.43 157.74 122.33 77.68 102.03 54.42 219.91 154.96 158.05 257.96 163.46 161.73 184.10 152.98 88.23 108.15 133.76 115.07 77.85 43 E7_Db NovelBoundary 0 3.78 6.12 1.83 1.30 3.99 2.21 9.94 5.91 42.45 1.05 7.48 13.65 0.00 2.47 14.09 3.33 8.79 2.11 4.42 2.68 3.15 5.69 8.71 44 E7b_E8a KnownJunction 0 142.77 194.37 152.03 95.79 182.26 232.93 140.70 92.91 118.37 60.98 342.30 180.66 158.27 312.97 159.71 311.11 221.41 183.60 150.40 115.31 167.17 128.53 137.86 45 ER8a ExonRegion 0 92.60 134.30 114.12 86.02 126.73 169.35 98.60 103.68 112.91 76.23 283.79 234.09 168.88 365.89 208.98 242.42 256.52 177.40 117.56 137.42 132.82 161.22 112.07 46 E8a_E9a KnownJunction 0 121.13 156.02 128.62 96.03 150.42 145.20 192.06 111.56 107.41 61.25 267.44 252.83 216.71 316.56 203.72 176.62 228.80 91.32 110.31 132.50 75.18 225.77 90.40 47 ER9a ExonRegion 0 105.24 132.30 89.32 90.87 124.14 134.44 132.35 91.41 97.78 83.04 268.99 246.53 181.93 305.28 172.29 213.34 239.81 125.95 107.86 109.85 93.86 136.96 86.22 48 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E9a_E11a KnownJunction 0 104.98 119.19 104.22 104.72 112.56 171.66 160.58 120.22 88.19 94.29 247.43 206.17 152.26 368.48 209.90 227.80 248.53 151.06 99.86 80.98 166.49 153.14 72.47 50 ER10a ExonRegion 0 1.28 1.05 0.01 1.12 2.92 1.02 0.08 0.02 0.95 0.02 0.02 5.60 0.00 0.11 6.51 0.09 1.73 2.80 3.28 0.00 0.00 0.06 1.51 51 E10_Da NovelBoundary 0 21.63 45.32 94.35 60.86 32.51 12.89 26.23 63.87 77.29 54.42 8.00 0.00 13.15 4.47 28.31 23.67 14.31 91.11 12.99 15.02 8.90 8.33 17.07 52 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER11a ExonRegion 0 185.94 197.39 127.42 111.41 171.15 206.35 152.27 123.64 104.04 90.47 326.75 301.28 181.99 339.08 224.32 281.35 279.62 177.18 134.26 127.28 118.86 183.00 140.03 54 E11a_E12a KnownJunction 0 126.69 229.37 125.01 90.13 110.87 198.24 152.45 130.86 108.53 102.67 357.09 353.22 186.03 305.14 276.28 272.49 248.81 155.20 154.26 138.51 186.94 160.86 132.23 55 ER12a ExonRegion 0 127.87 165.46 141.63 94.35 126.78 177.58 157.10 139.33 133.30 99.02 328.27 307.72 166.48 345.46 234.15 268.67 283.82 196.52 141.84 122.63 176.12 171.94 126.12 56 E12a_E13a KnownJunction 0 267.75 120.18 158.60 114.47 161.71 186.94 122.90 149.26 157.75 107.10 365.93 319.60 256.48 445.94 320.79 277.28 328.28 209.34 159.06 157.04 152.65 164.60 151.95 57 ER13a ExonRegion 0 167.39 136.37 149.57 114.52 147.91 212.34 148.44 149.21 137.68 97.08 395.14 407.73 269.40 421.39 302.20 328.86 340.14 204.67 149.95 149.91 163.24 187.18 128.56 58 E13a_E14a KnownJunction 0 151.88 181.61 167.97 117.83 176.32 187.28 199.75 188.28 148.18 101.16 371.15 305.80 296.08 434.99 369.37 331.02 344.93 171.82 145.60 198.85 141.35 189.58 113.87 59 ER14a ExonRegion 0 161.78 194.70 176.71 122.34 170.46 202.97 179.33 171.54 139.36 111.08 384.24 395.83 272.59 363.76 332.61 306.25 342.69 193.20 156.32 169.56 184.82 168.66 146.74 60 E14a_E15a KnownJunction 1 91.35 158.59 215.10 149.30 166.81 144.46 131.07 165.57 120.20 101.99 280.81 537.78 443.80 463.66 604.24 473.81 291.72 197.73 102.31 221.35 145.86 172.74 204.27 61 ER15a ExonRegion 0 102.30 96.53 201.86 129.61 116.35 118.77 106.65 170.22 147.60 116.39 340.19 464.55 307.98 437.59 522.90 385.58 451.07 168.58 274.21 203.65 200.21 215.09 182.46 62 E15_Ab KnownBoundary 1 133.06 92.75 186.39 118.17 148.22 165.42 156.07 179.16 172.65 131.60 429.74 317.35 153.72 323.09 463.57 244.98 631.98 148.44 266.64 222.05 275.71 186.64 123.35 63 ER15b ExonRegion 0 158.98 160.68 126.12 102.15 115.45 163.71 139.68 128.62 119.40 94.06 300.79 262.12 216.83 247.43 276.45 242.69 337.52 143.79 160.32 126.73 170.52 152.39 107.59 64 E15_Da KnownBoundary 1 450.97 288.96 114.93 92.56 239.05 306.02 252.83 100.10 83.54 66.03 249.27 433.94 408.90 385.66 618.95 456.55 411.78 174.10 310.31 138.70 134.12 167.72 165.95 65 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.77 0.00 7.80 5.61 2.28 0.00 0.00 12.82 4.47 4.45 16.92 0.00 4.06 3.86 3.26 8.40 0.00 4.10 66 ER15c ExonRegion 1 115.62 97.53 57.77 58.80 132.14 144.21 139.37 73.88 52.38 46.39 135.60 199.88 195.60 169.57 180.81 221.84 149.94 80.57 128.97 78.59 61.28 92.42 78.69 67 E15_Db KnownBoundary 1 47.86 84.33 61.15 85.47 99.92 100.91 150.06 63.34 49.39 37.02 68.75 138.65 143.50 134.85 92.09 106.81 69.10 47.84 117.37 86.48 31.94 47.58 55.74 68 ER15d ExonRegion 1 67.47 91.49 56.90 84.48 58.88 58.28 68.55 57.34 52.02 39.73 36.27 99.82 103.76 47.99 62.23 53.22 37.99 22.06 43.38 56.75 14.19 55.56 25.44 69 E15_Dc NovelBoundary 0 31.86 3.29 15.08 12.29 19.44 28.39 43.81 12.65 22.14 7.04 2.05 62.87 28.08 7.95 17.06 0.00 13.65 1.74 9.51 23.97 0.00 9.06 4.35 70 I15 Intron 0 15.99 19.17 9.19 18.68 28.76 21.61 27.82 19.21 16.46 10.87 6.49 23.75 26.85 11.37 12.00 17.75 16.51 14.13 24.06 25.41 6.54 6.66 15.74 71 I15_SR1 SilentIntronRegion 0 15.33 20.92 9.71 15.92 25.01 18.37 26.38 16.23 15.55 10.51 5.35 22.16 26.28 11.59 11.84 16.51 16.54 14.40 25.22 20.91 6.83 5.16 14.23 72 I15_AR1 ActiveIntronRegion 0 17.35 15.78 8.22 24.22 36.29 28.07 30.78 25.16 18.31 11.62 8.77 26.98 28.04 10.99 12.38 20.27 16.54 13.65 21.86 34.40 6.01 9.65 18.77 73 Ix Intron 0 13.49 11.34 12.61 15.64 22.76 15.10 13.72 7.53 4.89 3.63 4.62 15.76 8.65 8.81 12.47 11.84 4.38 8.06 12.69 8.48 1.74 5.53 3.90 74 Ix_SR1 SilentIntronRegion 0 13.56 11.40 12.68 15.72 22.88 15.18 13.79 7.57 4.91 3.65 4.65 15.84 8.69 8.85 12.53 11.90 4.41 8.10 12.76 8.51 1.75 5.56 3.92 75 E16_Aa NovelBoundary 0 39.04 41.44 41.36 45.75 52.97 53.89 57.94 17.42 26.88 35.94 2.11 6.00 14.45 9.18 8.90 27.26 24.03 40.38 37.27 32.73 16.49 18.06 28.77 76 ER16a ExonRegion 1 22.24 35.69 14.65 14.96 25.91 14.87 35.55 18.20 15.61 22.30 6.80 28.52 37.98 21.04 36.11 35.69 24.77 29.57 28.33 33.76 18.01 10.77 33.62