Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CISD1 Gene 0 37.49 93.34 55.97 47.64 65.14 119.69 52.37 62.48 54.90 28.43 44.05 74.00 38.79 72.21 91.18 35.75 49.01 34.54 34.22 72.16 22.85 57.69 20.18 2 333926 Transcript 0 34.66 113.03 40.01 31.66 71.65 80.71 46.87 35.44 38.27 18.27 26.92 45.54 16.11 40.25 35.87 23.49 28.61 29.27 30.51 52.60 17.67 27.99 7.10 3 464703 Transcript 0 3.05 9.04 0.89 3.05 2.50 0.49 3.43 1.34 2.49 0.97 2.17 2.53 2.18 3.09 0.33 1.65 3.15 5.52 4.15 7.68 1.79 0.56 0.00 4 489785 Transcript 0 2.61 1.10 0.47 0.00 4.30 2.25 2.19 2.00 1.45 1.04 0.00 4.04 2.29 1.97 0.00 0.00 3.04 0.00 0.00 1.68 0.00 0.00 0.00 5 488388 Transcript 0 10.12 24.98 11.93 5.82 22.48 17.32 15.82 13.29 7.83 4.24 13.16 13.28 13.18 17.58 20.51 17.15 15.50 16.74 7.82 19.71 7.26 5.48 2.78 6 ER1a ExonRegion 0 8.55 8.08 2.77 2.05 6.52 17.35 4.81 4.13 1.95 1.30 8.83 0.00 0.00 12.31 17.77 5.97 10.50 5.71 2.37 5.86 7.81 9.47 2.86 7 E1_Ab KnownBoundary 0 44.45 29.34 13.31 2.90 26.74 91.59 21.73 12.69 9.26 7.20 29.38 0.00 0.00 53.92 68.11 31.62 42.64 18.12 4.80 42.31 22.61 42.99 19.38 8 ER1b ExonRegion 1 117.27 247.85 76.26 36.40 280.25 699.38 220.29 55.49 57.97 28.26 98.21 28.52 9.83 165.89 205.14 111.83 123.18 136.98 102.11 146.30 73.96 81.52 78.64 9 E1a_E3a KnownJunction 0 3.78 12.83 1.66 0.00 0.00 0.00 6.49 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 4.21 6.05 8.19 5.75 2.97 0.00 0.00 10 E1a_E4b KnownJunction 1 85.13 249.30 98.19 36.99 203.91 201.42 111.47 69.95 60.16 32.31 78.34 64.67 0.00 111.54 80.72 64.94 81.81 88.34 92.99 108.66 59.12 33.98 15.71 11 ER2a ExonRegion 0 5.23 2.21 0.93 0.00 8.61 4.51 4.37 4.00 2.90 2.07 0.00 8.09 4.58 3.93 0.00 0.00 6.08 0.00 0.00 3.36 0.00 0.00 0.00 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2b ExonRegion 0 6.22 1.91 1.23 0.00 6.52 0.00 2.73 3.89 2.47 0.29 0.36 3.52 4.10 1.22 0.18 0.00 0.00 0.23 0.00 3.06 0.00 0.26 0.00 15 ER3a ExonRegion 0 5.30 4.05 0.76 3.41 2.87 1.97 7.25 1.04 1.83 0.72 3.95 3.83 2.07 5.20 1.31 3.19 4.83 4.82 4.66 9.94 4.18 2.26 0.00 16 E3_Da NovelBoundary 0 5.63 0.00 1.45 2.06 0.00 2.21 4.15 1.56 0.00 2.26 6.74 43.66 8.28 0.00 4.45 12.05 0.00 8.83 0.00 9.65 3.15 2.88 0.00 17 E3a_E4b KnownJunction 0 0.00 9.60 1.12 5.09 0.00 0.00 0.00 2.09 3.39 1.50 2.05 0.00 0.00 7.18 0.00 0.00 0.00 9.24 3.76 9.01 0.00 0.00 0.00 18 ER4a ExonRegion 0 37.04 102.70 43.50 18.40 74.92 75.19 41.70 34.57 32.11 18.35 41.56 25.98 7.04 51.97 44.97 28.24 36.31 58.20 38.22 57.45 30.85 19.79 7.34 19 ER4b ExonRegion 0 82.21 134.39 195.67 108.39 116.85 207.11 76.10 179.13 150.12 85.03 186.21 132.67 62.30 311.32 382.54 151.56 206.51 160.67 143.71 249.04 123.04 186.15 101.46 20 E4a_E5a KnownJunction 0 0.00 9.27 0.00 2.06 0.00 5.51 10.73 0.00 1.79 0.00 2.47 5.70 20.45 7.48 0.00 7.95 12.72 4.68 0.00 13.42 0.00 0.00 3.50 21 E4a_E6a KnownJunction 0 37.19 141.36 293.07 157.86 377.67 964.33 260.56 254.95 202.05 98.96 203.53 188.31 100.64 266.64 324.87 99.89 176.81 165.56 151.91 222.43 132.20 168.33 54.29 22 I4_AR1 ActiveIntronRegion 0 0.98 6.45 4.55 1.66 5.38 1.98 6.59 3.47 2.55 0.87 5.17 12.69 17.21 5.65 5.04 6.31 4.88 8.10 1.96 11.53 0.75 3.50 2.27 23 I4_AR2 ActiveIntronRegion 0 0.00 9.98 3.22 1.36 0.00 0.00 10.43 4.00 2.01 1.83 4.23 13.80 18.03 6.95 5.53 8.36 10.01 5.49 0.00 8.71 5.51 0.33 0.00 24 I4_SR2 SilentIntronRegion 0 4.54 6.59 3.26 3.21 7.29 3.37 6.74 3.25 2.57 1.57 10.44 13.55 7.92 6.49 4.31 6.11 5.68 6.12 1.52 16.20 1.89 2.41 2.10 25 E5_Aa NovelBoundary 0 16.52 21.44 5.09 7.36 11.88 8.01 13.56 9.24 2.89 1.67 12.11 13.05 12.99 4.89 8.90 11.36 3.46 14.18 0.00 26.85 3.15 0.00 0.00 26 ER5a ExonRegion 0 13.54 12.95 8.30 7.11 15.76 5.90 11.50 11.30 5.26 1.18 14.22 15.34 19.24 18.52 32.48 26.49 16.86 17.32 0.88 24.57 5.45 1.61 3.06 27 E5_Da NovelBoundary 0 6.22 6.38 6.59 10.95 8.23 0.00 10.95 2.14 12.04 4.43 11.42 26.71 13.64 4.65 4.45 4.27 0.00 14.51 9.60 24.16 0.00 5.27 0.00 28 E5a_E6a KnownJunction 0 0.00 0.00 7.86 1.53 21.73 0.00 15.15 20.58 0.00 1.67 7.53 19.36 19.15 9.95 25.09 23.07 11.59 3.48 0.00 3.13 0.00 6.00 0.00 29 I5 Intron 0 7.68 15.98 10.15 8.82 9.45 7.63 9.87 8.17 4.91 3.13 5.61 12.74 15.79 5.14 7.47 4.94 4.10 4.85 2.22 13.01 0.68 4.92 1.23 30 I5_AR1 ActiveIntronRegion 0 4.29 13.76 6.63 4.78 8.81 6.76 7.35 6.41 5.24 3.32 7.10 15.66 12.00 7.71 4.40 6.69 4.13 6.96 3.01 16.07 2.25 3.17 0.76 31 I5_SR1 SilentIntronRegion 0 4.62 17.88 14.85 5.65 9.25 6.28 16.90 8.05 4.75 4.60 15.63 13.78 13.95 5.67 7.58 6.67 9.01 7.64 3.42 19.58 1.49 7.37 1.85 32 I5_AR2 ActiveIntronRegion 0 11.60 37.22 11.82 8.70 11.35 4.96 15.44 6.18 5.76 2.60 6.49 27.54 22.35 3.82 7.46 6.30 4.67 2.12 2.40 12.59 0.00 4.10 2.33 33 I5_SR2 SilentIntronRegion 0 9.40 12.36 8.84 12.71 10.77 5.87 6.62 8.38 2.03 3.45 4.22 4.31 21.03 8.58 5.43 6.32 8.54 11.12 1.54 9.71 1.07 6.08 0.00 34 I5_AR3 ActiveIntronRegion 0 4.45 13.97 12.75 11.44 7.33 6.24 7.99 8.91 5.18 2.14 4.51 11.74 20.32 4.39 4.29 3.49 2.56 3.77 0.65 11.53 0.00 6.10 0.73 35 I5_SR3 SilentIntronRegion 0 5.04 14.30 8.30 6.71 5.84 6.35 7.72 5.37 5.23 2.12 2.82 12.60 16.62 2.99 6.25 2.51 0.72 3.19 0.54 11.80 0.00 5.47 2.07 36 I5_AR4 ActiveIntronRegion 0 10.74 11.00 8.86 9.00 11.32 12.77 12.12 11.07 4.65 3.79 4.91 10.69 10.28 6.18 11.91 5.46 6.33 4.87 3.15 13.01 0.54 4.50 1.17 37 I5_AR5 ActiveIntronRegion 0 16.25 14.76 13.01 13.82 15.07 6.95 7.53 14.41 6.22 6.10 6.01 4.74 12.32 4.89 17.17 6.43 4.15 5.71 5.53 12.94 1.72 3.97 0.57 38 E6_Aa NovelBoundary 0 18.08 17.10 7.92 20.74 15.96 10.56 8.30 21.56 14.87 2.23 5.05 0.00 13.80 2.47 10.75 4.36 3.65 8.12 4.24 19.69 0.00 2.69 0.00 39 ER6a ExonRegion 0 113.45 276.26 230.38 152.41 251.37 484.78 192.64 276.57 178.19 110.60 204.29 294.27 152.15 337.80 436.93 134.58 211.94 105.15 137.62 243.50 107.10 243.50 71.40 40 E6_Da KnownBoundary 0 113.80 232.98 189.59 88.33 107.30 53.49 74.86 185.78 128.50 67.13 111.92 167.45 133.27 173.70 261.45 55.37 100.42 59.15 50.07 141.58 43.68 97.30 24.24 41 E6a_E6b KnownJunction 0 3.11 9.67 0.00 3.70 7.13 0.00 0.00 2.22 4.75 0.00 2.68 6.30 6.66 0.00 0.00 3.42 3.55 1.95 0.00 6.01 0.00 0.00 0.00 42 ER6b ExonRegion 0 172.82 193.05 149.05 64.80 109.99 129.74 72.71 185.43 114.72 65.80 144.66 206.37 131.45 187.45 279.14 59.52 141.59 52.38 74.24 158.13 41.52 146.65 46.59 43 E6_Db KnownBoundary 0 134.54 136.82 33.44 30.63 47.88 124.76 50.30 62.15 41.90 27.86 24.37 81.93 44.96 48.50 79.61 30.76 39.74 3.52 51.39 45.76 5.13 131.53 22.79 44 ER6c ExonRegion 1 67.41 117.53 56.70 58.15 52.97 74.17 59.17 64.88 69.04 26.54 31.54 143.89 67.54 64.88 70.42 22.02 30.36 13.27 24.08 65.92 8.92 61.56 12.46 45 E6_Dc KnownBoundary 1 71.72 138.00 55.97 69.42 88.54 112.78 68.19 108.27 83.54 31.03 43.96 172.71 40.09 54.56 141.42 29.48 26.37 17.70 29.18 87.89 2.97 94.18 15.96 46 ER6d ExonRegion 1 32.89 139.40 33.35 51.21 43.63 44.46 43.64 33.87 55.45 22.95 11.51 70.24 40.74 23.02 27.12 13.58 8.59 12.74 16.50 65.47 1.83 42.77 6.06 47 E6_Ab KnownBoundary 1 20.82 140.57 32.67 46.75 50.34 43.90 43.99 22.02 33.01 20.31 12.58 91.08 31.65 19.19 23.73 4.36 13.56 15.01 13.37 58.23 2.66 37.72 3.33 48 ER6e ExonRegion 0 20.08 103.12 24.88 53.47 45.93 67.75 48.91 32.38 41.77 24.93 16.94 54.12 25.99 27.32 15.23 16.80 13.66 13.27 12.61 48.76 0.34 33.89 4.04 49 E6_Dd KnownBoundary 0 30.38 128.40 27.20 56.97 66.72 155.54 64.74 43.83 47.16 31.11 17.53 36.01 34.74 38.55 20.89 7.09 21.41 11.23 7.81 32.92 0.00 32.39 0.00 50 ER6f ExonRegion 1 12.08 55.32 25.74 36.37 32.55 59.62 27.54 33.82 35.53 16.50 8.99 47.24 23.70 14.13 17.85 9.48 13.55 10.28 10.18 30.42 1.91 25.74 3.75 51 IG39_AR1 ActiveIntergenicRegion 0 12.14 59.42 13.42 22.88 16.12 29.85 16.06 17.85 26.68 9.91 2.63 15.72 5.17 3.54 5.24 3.74 5.18 6.63 4.95 25.57 0.86 11.54 1.96 52 IG39_SR1 SilentIntergenicRegion 0 4.24 28.82 14.75 15.85 12.61 17.78 10.55 22.00 16.75 9.86 1.32 10.00 4.71 3.76 2.82 7.41 5.26 5.16 6.02 18.69 1.11 5.15 0.00