Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PBLD Gene 0 9.90 17.09 12.96 5.83 20.65 12.56 20.58 17.25 19.13 6.65 8.61 8.03 10.46 13.67 15.01 9.49 10.64 23.94 11.74 21.61 10.45 7.45 7.47 2 432941 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 395165 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 358769 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 473901 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 309049 Transcript 0 2.80 2.59 0.15 1.88 1.67 2.34 0.50 10.32 11.66 0.57 0.24 10.33 0.00 5.43 0.00 1.11 5.82 10.00 0.40 7.98 14.81 0.00 0.00 7 277795 Transcript 0 2.33 6.67 5.94 2.66 7.20 4.99 8.44 7.75 9.08 2.84 1.17 1.36 2.38 4.23 3.57 2.35 3.87 16.69 6.36 9.15 2.40 1.81 2.53 8 478192 Transcript 0 1.69 1.88 0.29 0.32 2.57 0.59 2.54 1.24 0.34 0.10 0.24 0.00 0.62 0.37 1.26 2.00 1.59 1.99 0.00 1.14 0.70 0.00 0.50 9 336578 Transcript 0 0.00 0.15 1.36 0.70 0.30 0.15 0.99 0.21 0.99 0.06 0.75 0.03 0.00 0.11 0.12 0.10 0.04 0.33 0.04 0.17 0.12 0.89 0.02 10 495025 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 468798 Transcript 0 0.00 5.79 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 3.97 2.03 4.75 0.00 6.69 7.11 9.60 2.38 2.47 0.72 4.11 0.00 0.00 7.51 0.00 1.86 7.01 15.01 3.19 5.59 1.93 1.82 0.73 13 ER1b ExonRegion 1 7.71 11.91 7.00 1.17 28.29 34.32 43.97 7.28 16.23 4.59 14.63 3.40 0.00 28.42 6.84 17.83 31.36 38.54 5.92 21.28 21.88 7.59 12.80 14 ER1c ExonRegion 1 18.15 34.07 17.39 3.64 57.86 71.20 80.64 23.18 43.87 13.89 55.47 13.88 12.46 62.22 26.18 47.33 58.36 77.17 24.44 46.11 61.65 33.85 58.64 15 E1_Da NovelBoundary 0 34.75 27.69 17.50 3.36 8.15 13.51 23.67 14.66 27.92 7.31 41.54 12.30 0.00 71.87 24.60 3.59 59.00 41.99 18.92 38.80 44.05 28.29 32.01 16 E1a_E2a KnownJunction 0 2.96 2.63 0.00 2.06 0.00 2.84 0.00 10.27 10.97 0.00 0.00 12.00 0.00 4.77 0.00 0.00 4.21 8.46 0.00 6.39 13.65 0.00 0.00 17 E1a_E2b KnownJunction 0 0.00 0.00 1.48 0.00 0.00 0.00 0.00 4.97 0.00 1.24 0.00 0.00 0.00 2.47 0.00 8.72 0.00 4.89 0.00 2.56 2.78 0.00 0.00 18 Ix Intron 0 8.47 5.68 13.77 4.54 5.98 29.69 10.97 8.15 17.99 9.07 47.85 5.19 5.24 61.07 12.88 35.41 43.62 55.21 29.64 25.35 45.72 22.88 58.21 19 Ix_SR2 SilentIntronRegion 0 13.48 7.13 18.41 5.42 6.52 31.94 9.85 12.78 22.93 10.62 51.67 6.62 5.97 69.22 13.47 39.28 41.18 72.03 24.45 30.69 55.98 26.18 58.79 20 Ix_SR1 SilentIntronRegion 0 2.68 3.94 8.28 3.53 5.49 27.51 12.55 2.77 12.24 7.09 43.65 3.56 4.43 52.31 12.32 31.24 47.04 35.66 36.03 19.11 33.97 19.11 58.39 21 E2_Ac NovelBoundary 0 12.00 16.51 6.80 3.40 4.33 0.00 4.50 14.70 12.44 7.39 4.84 24.46 0.00 16.54 14.34 4.27 16.83 13.76 12.33 27.36 29.71 0.00 4.35 22 ER2a ExonRegion 0 2.65 2.54 0.31 1.70 3.34 1.83 0.99 10.37 12.35 1.15 0.48 8.66 0.00 6.09 0.00 2.23 7.43 11.55 0.80 9.57 15.98 0.00 0.00 23 ER2b ExonRegion 0 4.14 7.88 2.45 3.46 2.90 1.60 2.76 15.99 14.31 6.83 3.38 18.76 0.00 10.76 4.84 9.29 11.42 17.09 5.84 21.01 24.06 0.00 2.81 24 ER2c ExonRegion 0 6.86 13.62 5.66 7.22 5.03 4.88 1.75 30.18 29.37 12.98 21.42 19.48 6.57 29.43 15.32 11.95 22.31 34.77 12.68 45.83 35.26 5.21 6.17 25 E2_Ad KnownBoundary 0 0.00 14.67 7.66 10.55 15.70 4.26 2.03 42.47 39.00 11.55 37.54 19.51 26.13 39.79 28.68 24.78 34.32 47.84 17.32 68.58 25.45 16.72 12.12 26 ER2d ExonRegion 0 0.00 16.60 10.33 4.93 21.45 9.41 11.84 34.65 31.37 8.33 27.60 17.32 3.45 19.85 10.88 17.75 16.41 51.85 11.90 50.53 20.71 21.33 11.44 27 E2a_E3b KnownJunction 0 3.78 25.26 19.51 2.06 38.37 26.41 31.89 34.21 37.38 8.76 5.26 6.00 0.00 20.13 9.64 10.68 3.93 47.84 4.52 32.21 16.80 23.33 3.93 28 ER3a ExonRegion 0 0.00 0.15 1.36 0.70 0.30 0.15 0.99 0.21 0.99 0.06 0.75 0.03 0.00 0.11 0.12 0.10 0.04 0.33 0.04 0.17 0.12 0.89 0.02 29 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 5.83 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER3b ExonRegion 0 6.35 28.21 20.15 9.09 84.90 56.48 80.06 35.83 47.92 16.31 22.40 18.34 13.08 28.30 20.89 16.12 24.85 64.35 18.59 44.71 33.94 13.70 8.95 31 E3_Da NovelBoundary 0 0.00 15.00 20.37 12.52 11.29 18.63 33.87 12.57 23.29 11.82 9.48 7.05 13.64 7.12 9.27 11.71 15.80 44.23 4.42 42.89 22.05 4.96 0.00 32 E3a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E3b_E4a KnownJunction 0 0.00 23.29 27.29 16.81 26.40 26.06 30.87 30.64 30.21 20.20 29.43 26.56 12.34 38.85 33.01 27.00 8.42 72.63 23.34 56.69 19.03 23.94 3.24 34 E3b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER3c ExonRegion 0 2.72 23.39 21.88 16.35 15.29 24.36 33.19 27.16 31.23 18.51 25.54 21.65 18.76 37.01 23.00 23.99 17.21 74.17 20.25 54.71 25.97 17.26 3.57 36 ER4a ExonRegion 0 8.34 20.60 18.41 5.36 4.89 10.82 14.68 25.49 36.33 17.60 14.68 16.88 7.72 30.30 11.05 15.19 10.30 56.74 8.17 36.15 25.44 19.74 2.76 37 E4_Da KnownBoundary 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.56 2.00 0.00 0.00 0.00 0.00 3.59 0.00 3.98 0.00 2.81 2.97 0.00 0.00 38 E4a_E5a KnownJunction 0 0.00 14.80 21.64 3.00 8.40 11.24 22.61 20.33 32.35 11.66 14.06 6.30 0.00 29.43 4.45 18.46 12.62 29.31 30.12 24.16 43.24 15.25 0.00 39 ER4b ExonRegion 0 1.69 1.88 0.29 0.32 2.57 0.59 2.54 1.24 0.34 0.10 0.24 0.00 0.62 0.37 1.26 2.00 1.59 1.99 0.00 1.14 0.70 0.00 0.50 40 E4_Db NovelBoundary 0 182.85 242.33 157.80 193.71 131.66 238.78 363.02 214.16 180.76 153.65 95.87 61.37 63.96 80.64 51.42 176.36 128.28 206.60 114.73 259.89 87.17 69.19 178.24 41 ER5a ExonRegion 0 4.69 20.57 19.81 6.68 12.22 5.75 23.65 22.24 35.08 16.29 17.78 1.01 2.42 23.44 13.54 22.14 22.06 59.84 25.38 23.33 31.84 16.15 10.38 42 E5_Ab KnownBoundary 0 6.52 22.96 18.83 13.48 14.18 4.66 20.89 33.31 42.56 21.11 12.53 0.00 6.82 19.31 11.13 28.97 30.01 98.58 23.81 40.14 10.93 13.04 3.50 43 ER5b ExonRegion 1 14.86 31.07 18.90 8.37 24.72 15.88 23.94 30.77 33.92 14.80 17.78 3.12 30.02 38.72 11.66 33.53 16.17 68.85 21.21 37.11 22.04 10.46 10.57 44 E5a_E6a KnownJunction 0 13.19 25.26 12.86 2.06 12.56 16.01 10.25 19.67 21.38 5.80 7.42 6.90 6.82 28.55 14.96 4.36 3.74 17.78 0.00 24.61 11.68 0.00 3.41 45 E6a_E7a KnownJunction 0 0.00 12.83 1.83 6.19 12.39 5.74 10.11 9.36 26.79 3.84 20.01 11.10 21.26 21.66 6.18 10.51 12.44 27.19 13.65 18.47 19.15 3.12 0.00 46 ER6a ExonRegion 0 5.50 17.83 9.27 5.45 13.38 10.82 8.74 20.57 24.91 4.51 15.53 5.20 16.26 26.91 8.03 5.85 8.14 19.96 9.77 21.91 15.43 2.50 2.94 47 ER7a ExonRegion 0 4.42 17.41 8.94 3.68 17.23 5.21 27.85 19.95 27.19 6.96 11.39 10.79 10.37 30.86 13.90 20.44 17.43 38.58 9.72 20.60 19.60 8.66 13.76 48 E7_Ab KnownBoundary 0 10.59 36.31 13.48 0.00 15.11 7.95 30.38 31.30 23.84 7.12 9.90 13.95 12.66 22.78 17.80 24.69 30.20 42.66 7.81 21.03 19.77 8.33 15.37 49 ER7b ExonRegion 0 7.08 21.35 20.91 5.03 11.04 11.81 23.58 39.81 26.09 5.02 18.66 8.79 8.79 16.04 26.11 21.36 29.19 51.10 16.32 18.88 20.38 8.79 7.53 50 E7_Da KnownBoundary 0 0.00 3.16 5.06 1.76 0.00 2.38 5.70 13.92 3.44 0.00 2.63 0.00 0.00 4.77 5.56 0.00 0.00 16.04 4.71 7.80 0.00 2.94 0.00 51 E7a_E7c KnownJunction 0 6.67 9.08 20.34 5.89 9.42 20.44 22.79 36.19 24.04 2.90 24.11 6.00 13.64 12.60 26.82 20.08 29.73 41.29 16.38 17.58 20.82 5.69 3.41 52 ER7c ExonRegion 0 1.61 6.82 2.55 1.91 2.02 2.40 4.22 5.90 7.58 0.94 0.31 0.83 0.76 3.40 2.40 0.08 4.21 11.29 1.50 5.90 1.32 1.44 1.26 53 E7_Ac KnownBoundary 0 0.00 3.29 4.02 1.96 8.66 0.00 8.57 5.05 5.06 3.28 0.00 0.00 0.00 4.94 4.45 0.00 4.77 13.10 0.00 5.62 0.00 0.00 3.59 54 ER7d ExonRegion 0 5.07 19.07 15.80 7.36 13.20 12.80 30.93 23.29 25.83 11.75 13.80 6.91 9.14 25.13 16.90 15.85 20.16 45.63 19.11 26.09 22.41 8.78 10.64 55 E7_Db KnownBoundary 0 0.00 15.39 6.71 1.56 0.00 11.30 14.09 9.65 15.34 5.45 0.00 7.20 6.82 6.83 0.00 3.50 8.51 20.89 13.37 29.53 9.02 0.00 0.00 56 E7b_E8a KnownJunction 0 3.19 2.63 13.01 4.93 12.05 2.50 9.76 22.22 12.47 1.48 7.11 6.30 0.00 9.54 10.01 10.60 8.32 19.28 4.80 9.14 14.21 3.06 11.95 57 E7b_E9c KnownJunction 0 0.00 5.79 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 58 ER7e ExonRegion 0 3.04 6.52 9.33 3.41 12.37 7.58 12.65 9.60 10.57 4.74 2.03 1.88 4.00 5.06 4.75 4.62 3.54 22.09 11.21 12.40 3.48 2.19 3.80 59 E7_Dc NovelBoundary 1 451.34 308.30 162.41 168.88 294.99 162.92 483.40 243.36 169.62 177.69 103.13 34.06 64.77 40.26 105.69 270.27 289.29 235.66 317.66 322.91 186.07 301.33 332.83 60 I7 Intron 0 5.85 16.55 7.64 2.73 11.38 7.26 10.97 10.19 9.07 2.30 2.02 4.28 3.48 5.14 3.82 1.78 3.21 6.93 6.18 8.74 1.65 1.87 2.19 61 I7_SR1 SilentIntronRegion 0 6.06 16.45 7.72 2.53 10.69 7.68 10.71 9.21 8.85 2.26 2.33 3.96 3.35 4.69 3.12 1.57 2.72 7.28 5.99 7.41 1.52 1.61 2.33 62 I7_AR1 ActiveIntronRegion 0 4.74 17.23 7.25 3.84 15.36 4.97 12.51 15.77 10.36 2.53 0.35 6.08 4.24 7.73 7.76 2.91 5.97 5.06 7.32 16.22 2.37 3.31 1.44 63 E8_Aa NovelBoundary 0 11.34 19.80 14.61 7.49 31.32 13.57 22.35 31.26 14.12 6.10 4.79 0.00 6.82 16.36 4.45 0.00 4.11 11.86 9.60 35.28 8.34 0.00 0.00 64 ER8a ExonRegion 0 2.35 18.14 16.16 8.22 33.85 10.33 21.73 20.36 22.25 7.72 5.00 4.54 10.35 15.16 10.41 22.17 25.46 24.96 21.29 25.43 22.14 14.25 4.43 65 E8_Da KnownBoundary 0 0.00 25.26 1.83 3.13 19.44 19.70 3.97 8.21 9.14 1.10 0.00 0.00 0.00 2.41 5.19 13.07 0.00 1.74 26.64 9.72 5.62 2.76 0.00 66 E8a_E9a KnownJunction 0 2.82 21.90 16.59 6.99 18.93 0.00 12.98 6.65 24.33 13.62 13.85 0.00 19.97 12.01 10.75 8.46 35.90 25.87 17.79 24.35 15.32 10.72 8.28 67 ER8b ExonRegion 0 7.68 12.16 6.80 4.01 11.51 5.91 10.49 10.93 11.25 2.90 2.22 0.68 3.85 2.40 2.10 2.58 1.89 2.01 9.21 5.54 1.50 2.52 0.56 68 E9_Aa NovelBoundary 0 9.78 18.75 4.73 3.23 3.90 0.00 21.55 0.00 5.84 4.70 0.00 0.00 0.00 2.47 5.69 0.00 4.30 5.10 9.04 8.44 3.15 3.12 0.00 69 ER9a ExonRegion 1 17.52 31.72 22.68 8.28 18.57 14.93 24.23 17.20 25.66 8.52 18.31 15.61 27.18 29.13 67.13 18.97 22.51 43.98 22.32 41.27 25.01 15.79 21.04 70 E9_Ab KnownBoundary 0 369.40 350.79 106.83 101.45 253.14 152.81 345.09 118.21 109.78 82.95 112.24 231.53 389.26 207.19 385.32 270.70 248.53 210.00 361.70 386.19 228.21 172.92 305.86 71 ER9b ExonRegion 0 18.18 21.22 15.93 8.63 40.51 19.65 30.50 32.20 29.10 9.70 9.91 12.81 18.56 19.39 20.30 8.21 14.10 14.68 16.79 35.98 6.94 12.68 6.72 72 E9_Da KnownBoundary 0 35.19 35.98 16.03 11.59 86.33 38.05 49.64 29.04 27.75 10.42 7.48 12.15 26.46 21.54 17.80 3.33 7.48 3.73 7.91 19.24 0.00 5.45 0.00 73 ER9c ExonRegion 0 42.97 37.59 16.00 15.23 45.53 25.08 40.16 32.51 27.77 6.27 9.63 20.36 32.17 15.89 12.67 5.98 7.14 5.49 5.45 29.51 1.11 9.72 4.72 74 E9_Ac KnownBoundary 0 29.04 19.34 35.60 28.83 40.07 17.94 55.47 25.30 24.02 4.06 12.63 25.21 28.41 16.83 17.06 17.26 17.02 17.78 4.33 45.13 6.36 13.72 0.00 75 ER9d ExonRegion 0 19.67 36.98 23.68 12.27 39.32 17.22 36.68 25.52 26.95 4.16 12.79 24.88 23.28 19.30 17.04 11.31 19.83 17.95 14.84 33.39 7.61 10.04 8.65 76 E9_Db KnownBoundary 0 45.79 53.08 13.22 8.06 46.60 55.08 28.79 22.80 16.81 6.69 12.95 0.00 13.47 2.47 4.57 7.43 17.86 6.34 17.13 24.16 0.00 5.88 7.85 77 ER9e ExonRegion 0 21.24 30.60 24.19 10.42 42.67 15.76 26.84 32.98 29.88 11.61 6.06 13.36 13.00 7.41 13.90 8.56 4.56 8.54 8.07 25.44 4.70 7.79 4.80 78 IG48_AR3 ActiveIntergenicRegion 0 4.99 8.72 1.17 1.31 13.18 8.65 17.58 7.73 9.47 1.10 0.41 0.00 0.00 1.06 1.94 3.18 0.00 6.47 2.73 3.65 4.72 0.00 1.89 79 IG48_AR1 ActiveIntergenicRegion 0 4.89 5.39 3.60 2.85 16.81 8.13 14.10 8.43 14.18 7.49 0.39 0.72 1.95 0.79 2.12 3.00 0.00 11.64 4.77 8.28 4.84 0.87 0.89 80 IG48_SR1 SilentIntergenicRegion 0 2.92 7.38 3.12 2.16 15.24 8.51 14.44 12.13 15.99 4.11 0.46 0.66 2.21 0.69 0.35 1.26 0.61 5.89 3.55 7.42 1.71 1.10 1.09