Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC6 Gene 0 15.35 48.55 25.24 18.03 27.89 57.23 38.64 36.77 60.91 29.36 65.43 106.36 155.82 81.09 33.53 63.54 68.98 39.07 30.54 48.46 86.13 69.98 34.52 2 395341 Transcript 0 5.80 11.41 14.27 10.11 2.83 14.33 8.33 32.03 41.91 22.87 15.73 2.40 7.68 5.19 4.20 21.83 25.93 55.16 14.49 19.85 53.04 15.77 11.47 3 263102 Transcript 0 6.48 22.12 8.77 9.07 13.73 29.95 18.88 14.14 22.92 11.42 11.89 38.97 41.06 15.66 8.79 11.01 8.21 4.32 6.61 11.61 6.81 29.57 5.88 4 491922 Transcript 0 1.33 1.58 1.92 2.40 1.82 1.47 3.82 0.86 3.85 1.04 1.36 1.71 2.73 1.35 1.20 1.71 2.26 1.96 1.67 2.11 6.72 1.29 1.46 5 ER1a ExonRegion 0 0.21 0.41 0.23 0.00 0.27 0.41 0.53 0.51 1.11 0.34 2.39 0.00 0.00 1.45 0.73 0.89 1.69 3.51 0.00 1.91 6.85 0.83 1.47 6 E1_Ab KnownBoundary 0 0.00 0.00 2.37 0.00 0.00 2.27 0.00 0.00 0.00 0.00 5.00 0.00 0.00 9.24 0.00 0.00 0.00 6.01 0.00 0.00 11.31 0.00 0.00 7 ER1b ExonRegion 0 1.45 13.92 8.75 2.70 3.09 17.12 10.83 12.18 21.18 10.14 31.24 16.46 22.92 42.69 18.29 26.80 38.70 24.88 12.76 23.77 80.61 20.19 17.48 8 E1a_E2a KnownJunction 0 3.78 54.33 21.85 11.69 4.33 81.43 18.64 44.28 100.23 51.71 111.45 103.98 209.08 77.70 15.20 115.27 101.45 86.02 78.40 104.82 209.55 87.56 59.58 9 I1_SR2 SilentIntronRegion 0 11.18 6.91 4.50 4.77 7.30 0.88 8.12 7.02 7.75 0.82 0.76 4.88 1.23 0.31 2.66 2.56 3.32 1.41 10.15 6.39 1.09 0.66 0.94 10 I1_AR4 ActiveIntronRegion 0 12.49 2.55 5.59 5.56 6.01 1.71 8.91 2.86 5.64 0.68 0.51 5.61 7.31 0.36 2.93 3.96 1.32 3.92 2.79 5.37 0.88 1.01 1.96 11 I1_SR3 SilentIntronRegion 0 12.06 3.62 7.64 4.49 7.57 1.66 10.73 5.60 8.72 1.49 0.32 2.46 10.85 0.06 4.74 7.30 4.19 5.14 7.82 9.61 1.01 0.29 1.91 12 I1_AR10 ActiveIntronRegion 0 11.29 2.03 2.15 2.53 5.02 0.94 7.02 5.85 7.81 3.01 0.29 1.98 7.74 0.20 1.81 7.13 2.41 4.30 4.46 10.29 1.35 0.32 0.97 13 ER2a ExonRegion 0 9.40 94.79 42.34 19.21 50.36 77.72 59.30 75.72 130.16 56.34 181.87 181.43 192.54 182.01 61.20 138.14 197.20 81.56 78.08 122.51 233.06 144.89 67.13 14 E2a_E3a KnownJunction 0 3.11 79.06 42.31 35.33 96.18 103.80 61.08 88.10 168.29 81.85 175.25 320.95 319.95 170.93 64.16 188.41 257.69 97.75 99.01 147.78 247.05 158.66 88.69 15 I2_AR3 ActiveIntronRegion 0 56.35 13.22 11.88 5.21 14.99 3.59 9.91 14.22 11.47 5.60 1.89 5.95 8.44 0.00 4.26 11.82 5.51 7.88 8.63 5.40 1.80 0.34 1.13 16 I2_SR3 SilentIntronRegion 0 16.87 7.12 8.91 5.75 6.96 1.53 10.77 8.12 7.92 4.05 1.04 3.06 6.57 0.77 4.82 3.58 2.91 2.66 3.64 4.32 0.82 0.00 1.22 17 I2_AR4 ActiveIntronRegion 0 27.43 10.38 11.92 3.57 13.56 1.41 13.46 7.48 8.09 5.51 1.30 2.26 9.48 0.90 8.02 4.97 3.96 3.52 4.43 4.54 1.24 0.00 0.99 18 ER3a ExonRegion 0 11.09 92.09 60.65 28.61 43.87 93.35 80.97 113.66 180.14 80.45 270.53 378.34 388.58 229.68 64.66 218.26 274.15 114.33 100.45 152.61 232.02 231.84 111.00 19 E3a_E4a KnownJunction 0 28.97 100.18 67.68 39.59 71.65 152.58 132.75 127.70 191.95 92.57 289.81 477.16 484.22 304.79 82.21 251.99 329.87 92.90 131.77 172.96 293.07 197.66 126.76 20 ER4a ExonRegion 0 28.25 121.90 50.94 38.24 51.89 133.73 84.82 100.58 170.28 84.84 237.58 448.27 530.06 250.85 73.79 218.08 253.41 90.45 93.23 138.15 270.70 203.80 91.52 21 E4a_E5a KnownJunction 0 55.34 242.52 61.85 38.29 89.64 182.17 126.17 111.89 192.56 108.07 306.55 593.29 565.55 301.73 94.07 252.58 289.76 150.06 65.23 123.10 293.44 234.52 95.35 22 ER5a ExonRegion 0 35.99 125.80 50.49 36.07 58.95 136.28 95.28 94.06 166.18 95.96 238.68 406.08 526.39 339.19 70.31 245.80 273.56 155.51 110.12 142.12 388.76 210.19 142.38 23 E5a_E6a KnownJunction 0 33.19 111.89 68.57 40.69 77.67 138.73 105.77 119.24 174.01 97.91 281.28 364.77 648.98 395.79 107.30 330.60 317.16 240.10 123.49 185.68 451.65 235.38 160.99 24 ER6a ExonRegion 0 29.87 93.51 69.23 45.15 53.28 162.81 88.24 103.81 173.53 78.65 235.56 296.17 489.47 313.53 106.07 261.91 283.86 235.12 118.26 141.59 458.32 219.65 150.85 25 E6a_E7b KnownJunction 0 19.48 124.06 81.40 52.21 62.65 238.27 160.22 132.87 219.91 85.13 340.30 292.90 438.28 341.10 172.94 267.88 363.35 271.64 132.80 133.59 492.12 249.59 192.49 26 ER7a ExonRegion 0 1.33 1.58 1.92 2.40 1.82 1.47 3.82 0.86 3.85 1.04 1.36 1.71 2.73 1.35 1.20 1.71 2.26 1.96 1.67 2.11 6.72 1.29 1.46 27 E7_Ab KnownBoundary 0 2.74 0.00 0.00 3.70 4.24 0.00 12.06 0.00 6.25 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 0.00 5.81 3.12 0.00 28 ER7b ExonRegion 0 36.49 89.80 83.01 59.34 48.51 201.00 98.83 121.30 203.51 75.00 282.86 350.73 625.65 316.95 148.72 337.60 324.21 327.05 143.79 187.57 533.45 264.07 218.99 29 E7a_E8a KnownJunction 0 17.71 59.86 75.43 48.38 55.43 178.42 58.60 102.48 186.86 85.99 233.01 363.12 711.15 325.09 147.23 399.98 291.44 341.24 167.06 184.85 380.18 218.24 238.50 30 ER8a ExonRegion 0 15.71 54.14 56.42 35.93 33.48 102.53 52.11 86.63 166.04 68.43 263.35 247.13 462.62 299.03 133.90 303.13 288.26 250.19 123.80 160.32 495.85 156.80 155.69 31 E8_Da NovelBoundary 0 3.48 2.76 0.00 2.93 0.00 0.00 24.82 0.00 7.26 1.32 0.00 0.00 0.00 4.59 0.00 0.00 0.00 17.00 13.74 6.07 3.15 0.00 3.59 32 E8a_E9a KnownJunction 0 24.60 83.60 38.64 41.22 28.86 96.36 41.69 63.25 134.89 56.38 183.63 280.59 345.59 261.70 116.69 255.66 244.97 188.28 122.64 157.94 395.44 158.23 158.95 33 ER9a ExonRegion 0 48.02 69.64 39.54 20.99 36.39 117.80 56.84 61.66 135.25 51.02 126.37 250.40 492.42 210.97 98.49 186.76 189.98 121.92 89.10 130.46 368.05 114.24 123.62 34 E9_Da KnownBoundary 0 19.34 45.39 7.42 5.03 4.33 37.59 26.14 14.09 27.89 13.38 22.32 24.01 82.30 42.73 6.06 36.40 33.94 30.80 30.68 34.13 97.79 13.41 33.38 35 E9a_E9b KnownJunction 0 17.19 33.81 16.38 10.89 8.23 42.59 24.47 51.59 60.62 32.05 44.80 7.20 23.05 14.13 11.87 64.60 76.11 106.74 43.48 57.65 152.28 46.48 32.95 36 E9_Ab KnownBoundary 0 16.52 28.42 13.39 4.79 29.63 51.11 38.42 25.30 42.79 19.47 70.23 24.16 96.75 23.66 19.04 70.75 46.66 72.13 56.94 52.73 112.43 33.49 22.11 37 ER9b ExonRegion 0 27.51 73.89 23.69 13.63 27.65 103.92 61.34 45.52 67.11 40.91 115.33 160.19 398.65 165.12 70.60 159.50 116.63 133.04 94.50 112.77 260.77 80.56 75.37 38 ER9c ExonRegion 0 31.70 76.85 35.08 17.96 43.22 115.29 67.69 48.23 95.60 50.38 156.49 124.45 277.87 228.95 90.75 160.33 141.81 138.95 96.43 116.08 276.01 96.36 92.21 39 E9_Db KnownBoundary 1 16.00 20.46 22.32 9.36 4.16 69.79 49.86 27.15 42.74 30.33 69.23 88.68 127.10 79.64 10.14 63.57 79.94 44.11 38.31 41.16 124.98 57.19 27.23 40 E9b_E9c KnownJunction 0 0.00 0.00 26.20 19.44 0.00 0.00 0.00 43.99 64.00 36.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.22 0.00 0.00 0.00 0.00 0.00 41 E9_Ac KnownBoundary 0 22.52 86.10 18.48 9.66 53.23 49.18 33.25 36.35 58.10 14.10 108.92 81.03 85.87 78.76 31.65 51.27 89.48 51.03 46.12 62.96 96.50 46.48 42.77 42 ER9d ExonRegion 0 38.10 113.07 41.66 21.81 49.23 105.63 82.88 76.05 109.18 52.53 177.83 193.96 351.75 234.20 73.69 150.39 182.21 119.00 73.90 117.45 244.61 101.68 66.96 43 ER9e ExonRegion 0 48.44 185.96 69.82 38.50 67.37 108.68 83.98 86.79 141.24 75.21 176.76 186.85 350.69 233.32 89.09 175.79 193.00 90.47 76.36 123.62 258.44 128.81 81.40 44 E9_Dc KnownBoundary 0 81.57 153.72 91.57 53.67 168.85 209.99 202.57 113.08 157.98 98.56 156.93 296.05 485.03 296.19 112.49 203.19 129.59 53.64 53.93 141.96 201.09 135.63 81.44 45 ER9f ExonRegion 0 53.99 146.01 83.47 61.55 101.79 168.37 124.13 108.60 165.15 83.03 140.46 298.26 464.01 176.68 90.06 119.31 137.02 43.24 60.05 123.47 77.53 193.70 62.32 46 E9_Dd KnownBoundary 0 75.20 229.63 63.21 55.74 148.98 214.93 221.12 77.05 178.53 85.15 188.78 372.72 413.45 163.17 95.31 120.74 116.69 30.80 47.72 175.39 120.84 193.19 60.86 47 ER9g ExonRegion 0 6.48 22.12 8.77 9.07 13.73 29.95 18.88 14.14 22.92 11.42 11.89 38.97 41.06 15.66 8.79 11.01 8.21 4.32 6.61 11.61 6.81 29.57 5.88