Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-135A24.1 Gene 0 2.04 3.91 1.76 6.64 4.12 2.12 12.49 0.99 2.47 0.66 1.49 5.64 6.85 0.51 2.69 1.72 3.81 1.95 0.61 6.14 0.85 0.00 0.00 2 417447 Transcript 0 0.97 1.86 0.83 3.41 1.96 1.01 6.10 0.47 1.18 0.31 0.95 2.68 3.25 0.24 1.28 1.18 2.22 1.16 0.29 3.69 0.68 0.00 0.00 3 ER1a ExonRegion 0 0.00 0.00 0.00 1.31 0.00 0.00 0.89 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.92 2.13 1.19 0.00 4.04 1.42 0.00 0.00 4 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 Ix Intron 0 24.00 17.09 19.35 24.85 14.30 6.23 15.50 13.55 9.30 6.45 2.36 9.16 16.75 1.26 7.33 8.41 7.80 4.96 3.73 10.62 0.90 0.38 2.23 6 Ix_SR1 SilentIntronRegion 0 14.19 11.46 12.79 19.71 11.01 5.03 13.09 8.67 7.40 5.41 2.49 12.14 16.17 1.37 4.82 8.51 7.93 5.48 3.11 10.60 1.32 0.48 1.99 7 Ix_AR1 ActiveIntronRegion 0 26.70 20.91 18.00 44.61 17.35 8.23 18.26 20.27 15.37 6.67 2.59 13.26 18.68 0.67 7.33 4.65 2.00 4.87 2.50 13.55 0.00 0.00 0.99 8 Ix_AR2 ActiveIntronRegion 0 16.15 30.50 16.83 32.78 12.53 3.19 17.77 24.93 11.64 6.34 0.00 34.64 9.63 0.00 3.05 5.01 3.30 1.26 2.51 12.21 0.00 0.00 0.00 9 Ix_SR2 SilentIntronRegion 0 34.34 19.50 30.58 36.81 14.67 7.37 15.74 20.07 12.88 11.04 2.92 8.04 17.14 1.35 8.57 10.55 9.67 7.34 4.96 10.32 1.01 0.43 3.16 10 Ix_SR4 SilentIntronRegion 0 76.04 53.07 14.88 25.77 14.74 7.03 12.36 23.44 11.90 6.96 2.31 4.27 15.99 2.06 11.36 7.12 3.95 3.96 3.81 9.17 0.00 0.50 2.11 11 Ix_AR5 ActiveIntronRegion 0 59.70 31.04 25.06 29.45 15.68 5.46 13.41 29.04 15.35 12.27 3.18 13.69 16.38 1.72 11.99 8.70 7.36 4.69 6.62 14.46 0.91 0.51 3.62 12 Ix_SR5 SilentIntronRegion 0 9.44 10.38 10.24 9.52 12.36 1.92 9.98 9.38 5.39 6.12 0.00 16.67 14.34 0.56 4.70 4.61 1.71 0.00 1.35 6.99 0.00 0.00 0.00 13 Ix_SR6 SilentIntronRegion 0 37.93 19.17 32.70 30.00 24.71 8.69 18.96 17.80 12.19 8.61 2.08 6.54 15.17 1.44 8.69 7.19 8.35 6.32 2.38 11.67 0.76 0.25 2.53 14 Ix_AR7 ActiveIntronRegion 0 86.40 34.67 32.21 45.51 20.35 4.05 20.31 34.47 21.39 11.12 2.15 8.63 40.55 2.62 26.63 16.13 11.20 6.06 8.86 12.81 0.00 2.10 5.50 15 Ix_AR8 ActiveIntronRegion 0 71.59 45.50 61.91 56.64 67.70 18.50 38.13 33.06 25.77 10.17 3.21 15.09 39.59 1.94 17.67 8.10 8.06 2.97 7.07 10.76 0.37 1.94 3.93 16 Ix_SR7 SilentIntronRegion 0 83.50 25.10 28.26 24.27 19.40 8.27 14.67 12.44 6.98 4.91 1.36 6.80 23.31 0.74 11.84 3.65 3.09 2.47 2.52 7.58 0.96 0.02 1.88 17 Ix_AR9 ActiveIntronRegion 0 33.40 30.56 24.12 27.04 26.15 3.74 20.19 19.36 12.65 6.79 1.66 4.54 14.72 0.61 6.87 12.76 8.15 2.56 3.42 7.31 0.95 0.45 0.95 18 Ix_AR10 ActiveIntronRegion 0 30.12 31.57 10.74 31.88 15.40 1.12 12.09 10.08 13.19 4.10 0.45 5.54 8.52 1.68 9.06 7.32 7.00 3.85 1.98 8.54 0.00 0.00 0.21 19 Ix_SR8 SilentIntronRegion 0 13.06 17.68 17.56 21.75 14.20 3.39 13.20 12.92 6.72 4.65 1.75 6.10 14.51 1.22 5.40 9.18 8.18 5.10 3.88 9.14 0.44 0.41 2.20 20 Ix_AR11 ActiveIntronRegion 0 11.21 19.90 13.50 18.75 10.65 5.10 20.22 14.14 9.83 5.27 3.52 16.29 35.32 1.01 8.61 7.71 8.24 3.75 3.88 13.99 0.97 0.00 1.41 21 Ix_SR9 SilentIntronRegion 0 10.90 11.98 12.41 19.33 10.02 7.33 17.81 7.80 6.84 3.64 2.90 7.93 14.80 1.02 6.54 7.93 9.06 3.55 4.27 12.00 1.28 0.10 2.26 22 Ix_AR12 ActiveIntronRegion 0 14.25 8.10 16.56 20.81 10.04 8.68 17.97 5.54 3.25 4.05 0.72 5.44 12.79 1.56 10.03 7.12 7.63 3.33 4.91 11.11 0.00 0.00 2.15 23 Ix_SR10 SilentIntronRegion 0 4.67 6.35 7.09 10.82 4.68 7.54 10.58 3.14 2.66 1.43 1.03 7.02 16.99 0.71 6.42 4.75 2.51 1.97 0.97 7.61 0.34 0.48 0.67 24 E2_Aa NovelBoundary 0 7.19 15.66 4.11 16.45 7.39 14.14 22.35 0.00 1.56 3.57 2.68 0.00 45.61 0.00 4.45 3.85 4.68 2.57 0.00 9.72 0.00 0.00 0.00 25 ER2a ExonRegion 0 2.90 5.58 2.50 8.91 5.87 3.02 17.41 1.41 3.53 0.94 1.59 8.03 9.76 0.73 3.84 1.63 4.53 2.27 0.87 7.03 0.60 0.00 0.00