Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SYT15 Gene 0 62.04 26.07 28.00 24.15 50.36 33.83 24.26 40.51 32.22 19.33 10.33 7.93 7.19 6.42 11.65 19.58 12.32 31.17 22.46 38.38 22.08 23.97 25.95 2 374323 Transcript 0 0.70 0.45 1.00 0.00 1.66 0.35 1.06 1.73 3.53 0.68 0.00 0.00 0.00 0.25 0.00 0.00 0.00 1.23 0.51 0.93 0.54 0.20 0.00 3 374330 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 416127 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 374321 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 374325 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 374328 Transcript 0 2.65 0.00 0.15 0.00 1.34 0.23 0.50 1.51 1.85 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.37 8 430007 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 1.40 0.91 2.00 0.00 3.31 0.70 2.11 3.47 7.06 1.36 0.00 0.00 0.00 0.50 0.00 0.00 0.00 2.46 1.02 1.85 1.09 0.40 0.00 10 E1_Ab KnownBoundary 0 6.59 0.00 1.27 0.00 4.33 0.00 0.00 5.09 1.50 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 5.94 2.84 0.00 0.00 11 ER1b ExonRegion 0 5.86 1.30 1.07 0.00 1.36 0.59 0.42 3.13 3.44 1.46 0.00 0.00 0.00 0.43 0.77 0.00 0.00 1.48 0.00 1.61 1.61 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.04 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Aa NovelBoundary 0 3.04 9.74 1.33 0.00 8.66 2.38 5.87 2.55 10.13 4.78 0.00 0.00 0.00 2.30 0.00 0.00 0.00 16.33 0.00 6.07 0.00 0.00 0.00 15 ER2a ExonRegion 0 5.20 1.01 4.54 0.51 9.03 2.75 2.26 7.55 7.53 3.40 0.00 0.00 0.00 0.67 0.00 0.00 0.00 3.66 1.69 4.30 2.74 0.00 0.00 16 E2_Da NovelBoundary 0 0.00 0.00 5.00 0.00 0.00 2.90 8.83 12.53 13.98 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.09 0.00 12.66 3.15 0.00 4.01 17 E2a_E3a KnownJunction 0 3.78 0.00 0.00 0.00 4.07 0.00 1.94 2.26 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E3_Aa NovelBoundary 0 6.67 0.00 1.83 0.00 3.65 0.00 4.37 6.98 9.95 15.90 0.00 0.00 0.00 0.00 0.00 3.67 0.00 2.24 8.00 20.07 3.15 2.69 0.00 19 ER3a ExonRegion 0 8.47 0.95 0.00 0.00 2.34 1.29 2.33 5.38 7.88 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.93 4.13 3.51 0.00 0.00 1.45 20 E3_Ab KnownBoundary 0 10.37 3.29 0.00 0.00 12.14 0.00 3.93 11.21 11.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.35 13.74 9.08 0.00 0.00 4.10 21 ER3b ExonRegion 0 5.53 2.09 0.00 1.36 4.50 0.00 2.45 5.69 4.60 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.32 2.39 2.39 0.00 0.00 0.65 22 E3a_E4a KnownJunction 0 12.82 0.00 0.00 0.00 7.64 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E4_Aa NovelBoundary 0 6.37 0.00 0.00 0.00 12.22 5.22 1.81 4.97 3.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 9.08 0.00 0.00 24 E4_Ab NovelBoundary 0 31.34 6.12 0.00 1.80 7.47 0.00 4.46 8.21 6.28 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 3.03 0.00 0.00 25 ER4a ExonRegion 0 10.58 2.03 1.02 0.45 2.68 0.00 0.44 3.46 2.88 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 1.60 0.00 0.00 0.00 26 ER4b ExonRegion 0 12.17 1.44 1.23 0.00 15.00 1.30 1.24 4.50 9.39 4.23 0.00 0.00 0.00 0.00 0.00 2.72 0.00 1.85 2.26 6.74 1.24 3.13 0.00 27 E4_Da KnownBoundary 0 24.60 0.00 1.45 0.00 8.15 2.73 0.00 6.61 13.98 4.62 0.00 0.00 0.00 0.00 0.00 3.25 0.00 2.36 4.52 5.69 5.44 3.12 0.00 28 E4a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER4c ExonRegion 0 7.95 0.00 2.12 0.88 4.60 5.81 4.01 8.17 13.66 1.94 0.00 0.00 0.00 0.45 0.00 0.18 0.00 3.79 1.84 2.56 1.40 0.53 3.31 30 E4_Ac KnownBoundary 0 10.08 0.00 3.10 0.00 6.96 11.98 3.97 7.80 12.18 3.12 0.00 0.00 0.00 2.41 0.00 0.00 0.00 6.80 0.00 6.20 0.00 0.00 7.17 31 ER4d ExonRegion 0 21.99 0.00 1.72 0.88 11.18 4.13 6.95 9.89 17.26 3.39 0.00 0.00 0.00 0.12 0.00 1.28 0.00 3.37 0.00 3.70 1.90 1.80 1.67 32 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E4b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E4b_E6b KnownJunction 0 26.82 0.00 1.74 0.00 16.98 2.38 5.56 12.24 15.02 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 5.29 0.00 0.31 0.00 2.68 0.46 0.99 3.02 3.71 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.73 37 ER6b ExonRegion 0 16.32 0.00 1.74 0.61 7.65 3.84 4.31 11.77 8.23 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 4.46 0.00 0.00 0.93 38 E6a_E7a KnownJunction 0 14.37 0.00 1.33 0.00 0.00 2.16 7.86 9.53 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER7a ExonRegion 0 16.09 0.89 1.77 0.03 4.73 2.99 5.45 10.39 3.02 0.06 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.23 0.08 1.83 0.93 1.76 0.10 40 E7a_E8a KnownJunction 0 6.67 0.00 0.00 0.00 15.96 0.00 1.81 10.47 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E8_Aa NovelBoundary 0 27.41 6.12 25.46 10.49 6.54 33.67 7.95 31.50 26.62 15.18 4.84 0.00 0.00 9.36 0.00 12.99 0.00 44.98 17.51 30.62 29.22 11.21 21.17 42 ER8a ExonRegion 0 14.57 1.71 5.17 2.43 5.16 5.01 1.91 19.73 10.60 5.30 1.36 1.59 1.35 1.11 0.19 4.21 1.72 9.44 1.11 5.53 8.04 2.43 6.33 43 E8a_E9a KnownJunction 0 13.26 0.00 6.56 5.63 8.57 9.20 6.05 18.73 8.97 8.06 7.26 6.00 6.66 0.00 0.00 0.00 0.00 16.21 8.09 13.61 22.30 5.08 19.72 44 E8a_E9b KnownJunction 0 13.04 0.00 0.00 0.00 4.33 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 I8_SR1 SilentIntronRegion 0 5.42 2.93 8.33 2.93 3.86 3.52 2.12 11.96 4.13 3.69 1.86 0.29 0.00 1.44 1.05 5.47 4.23 14.34 6.12 10.22 8.99 4.34 7.76 46 E9_Aa NovelBoundary 0 10.00 12.30 44.53 20.08 11.80 22.94 0.00 39.23 11.14 7.09 4.95 7.20 0.00 4.65 9.64 12.39 0.00 68.23 4.61 26.65 23.97 8.45 20.23 47 ER9a ExonRegion 0 59.22 28.17 50.43 32.31 45.73 43.70 25.00 59.55 44.57 26.90 19.03 10.40 8.47 11.53 20.73 36.84 21.16 73.45 42.44 59.23 50.15 32.21 50.36 48 E9_Da KnownBoundary 0 52.08 20.65 28.44 17.71 62.39 39.30 28.35 37.62 31.34 20.25 21.64 11.85 13.47 4.30 31.65 32.90 22.53 45.43 35.01 42.25 20.08 37.23 54.03 49 ER9b ExonRegion 0 95.04 29.31 16.48 15.99 42.59 29.64 24.55 20.27 16.78 13.74 11.65 13.98 22.69 12.92 24.02 23.00 27.19 30.31 24.43 33.31 27.38 19.08 24.77 50 E9_Ab KnownBoundary 0 104.46 10.06 0.00 5.53 16.47 0.00 4.50 6.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.20 3.26 0.00 0.00 0.00 51 ER9c ExonRegion 0 203.79 65.28 48.06 50.96 80.93 54.15 37.85 71.36 47.41 31.53 15.74 6.45 6.51 8.02 16.34 57.02 33.82 104.79 57.34 75.90 45.56 39.97 75.69 52 E9_Db KnownBoundary 0 218.78 72.49 40.00 17.91 102.80 45.88 30.60 35.28 29.20 14.29 18.79 5.85 13.80 7.24 35.60 66.65 39.18 67.98 33.98 70.50 46.15 48.19 72.99 53 E9_Dc KnownBoundary 0 140.17 34.14 21.44 28.10 46.01 31.91 27.51 32.33 19.39 22.97 9.84 0.00 20.78 10.18 5.07 12.65 13.93 48.58 27.48 99.77 39.54 23.64 38.33 54 E9c_E10a KnownJunction 0 0.00 0.00 0.00 0.00 4.16 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.37 0.00 1.74 0.00 0.00 0.00 0.00 0.00 55 ER9d ExonRegion 0 145.19 48.16 49.16 42.69 75.67 42.54 30.45 63.05 44.37 38.26 15.70 5.89 16.32 12.15 25.88 43.04 32.61 89.06 30.20 92.00 51.74 36.17 61.43 56 E9_Dd KnownBoundary 0 130.39 54.86 36.19 32.03 56.96 63.54 37.49 35.20 23.15 31.51 23.53 0.00 0.00 0.00 0.00 29.56 18.05 29.43 23.44 53.31 42.87 51.56 28.68 57 ER9e ExonRegion 0 119.21 26.37 47.00 40.36 49.11 45.02 27.72 47.95 35.06 38.62 13.84 4.61 19.82 6.18 10.20 29.15 15.55 56.15 26.92 71.72 42.94 37.03 32.87 58 ER9f ExonRegion 0 124.47 55.89 40.92 48.36 122.67 64.70 53.59 70.71 54.69 34.74 13.73 13.35 10.15 6.08 13.81 23.27 13.61 19.85 26.25 62.74 16.89 47.91 33.18 59 E9_De NovelBoundary 0 474.01 52.23 64.28 46.28 269.35 116.52 169.32 105.93 47.42 48.38 22.90 13.50 13.64 7.36 18.54 41.61 26.74 45.97 22.87 87.76 30.52 59.83 52.75 60 I9 Intron 0 25.24 6.69 0.00 0.00 20.91 2.26 6.53 7.42 3.79 0.70 0.00 4.40 7.38 1.10 2.88 1.22 0.00 0.00 0.00 1.75 0.00 4.28 1.21 61 I9_SR1 SilentIntronRegion 0 25.24 6.69 0.00 0.00 20.91 2.26 6.53 7.42 3.79 0.70 0.00 4.40 7.38 1.10 2.88 1.22 0.00 0.00 0.00 1.75 0.00 4.28 1.21 62 E10_Aa NovelBoundary 0 116.76 133.79 73.86 87.83 211.63 125.61 88.68 73.77 110.16 76.74 19.48 6.30 29.54 12.71 23.61 24.35 25.25 24.00 34.17 99.46 11.31 45.44 19.63 63 ER10a ExonRegion 0 97.93 45.93 34.19 42.42 66.11 71.14 34.61 52.69 55.73 35.78 15.43 20.06 14.07 14.20 12.37 28.44 16.38 17.36 38.57 55.64 10.34 35.49 16.19