Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF438 Gene 0 26.64 12.01 19.01 12.43 20.89 42.56 11.93 20.39 20.11 17.19 22.68 21.57 17.60 14.75 11.07 9.45 24.31 17.73 8.39 10.23 18.85 26.29 26.19 2 452305 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 442986 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 436087 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 413025 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 375311 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 331737 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 361310 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 444692 Transcript 0 2.12 0.00 1.63 1.36 8.03 13.45 1.77 6.34 7.82 5.73 3.22 5.77 1.56 1.62 1.93 0.00 4.40 1.23 2.12 4.26 0.73 9.72 8.81 10 430896 Transcript 0 7.94 3.05 3.68 4.09 7.36 7.34 3.97 7.35 8.95 6.88 5.32 14.07 4.69 5.68 2.90 2.97 4.95 5.08 0.80 4.79 6.06 11.46 8.08 11 ER1a ExonRegion 0 0.00 0.94 0.38 0.52 4.12 2.96 1.73 0.00 0.48 0.00 0.74 0.00 0.00 2.87 4.69 0.00 1.27 1.85 0.00 0.00 0.00 2.08 0.68 12 ER1b ExonRegion 0 5.22 3.80 1.88 1.39 7.45 16.25 8.49 1.58 3.79 2.68 5.17 1.18 0.00 6.80 7.85 5.59 5.38 7.15 1.77 3.31 5.41 6.98 3.03 13 E1a_E2a KnownJunction 0 3.78 9.34 4.79 1.80 19.95 4.54 9.23 4.27 11.17 1.40 4.79 5.40 0.00 4.77 4.45 15.89 12.06 4.68 0.00 2.62 3.15 2.39 3.59 14 E1a_E3a KnownJunction 0 25.49 3.35 0.00 0.00 8.66 12.27 11.31 4.27 1.30 6.93 2.68 5.70 0.00 2.30 0.00 3.50 8.32 2.24 0.00 0.00 2.78 0.00 3.24 15 ER2a ExonRegion 0 1.09 4.84 4.50 2.47 26.76 16.57 22.92 5.93 9.90 7.42 9.56 6.64 6.79 7.08 1.35 4.87 7.28 3.54 0.00 0.99 3.76 22.09 3.49 16 E2_Da NovelBoundary 1 2.82 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 3.16 1.69 3.50 3.74 0.00 5.03 4.85 8.94 9.64 7.11 0.00 0.00 2.47 0.00 4.27 0.00 0.00 0.00 2.81 5.81 16.53 11.95 18 ER3a ExonRegion 0 11.19 7.82 4.92 3.95 7.78 27.36 10.75 9.97 16.18 10.58 17.70 25.08 13.16 9.01 2.45 13.28 7.67 3.89 3.85 9.78 8.96 19.51 23.95 19 E3a_E4a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 1.77 3.90 1.10 1.16 0.00 0.00 6.82 2.30 0.00 0.00 0.00 2.11 0.00 0.00 0.00 3.00 0.00 20 E3a_E5b KnownJunction 0 0.00 0.00 1.71 2.06 0.00 2.38 4.46 10.23 12.01 9.83 7.53 18.31 6.82 7.30 4.45 0.00 13.74 1.70 3.76 9.65 3.15 20.27 24.41 21 ER4a ExonRegion 0 4.34 0.00 0.54 0.12 7.60 18.20 4.87 8.47 10.16 2.83 2.41 3.42 1.56 0.66 1.29 0.00 0.82 2.97 3.30 4.18 0.00 4.19 1.92 22 E4a_E5b KnownJunction 0 7.41 0.00 0.00 0.00 4.24 30.15 2.12 10.88 5.90 3.68 5.37 6.30 0.00 0.00 5.69 0.00 4.77 2.32 4.24 8.82 0.00 5.14 0.00 23 ER5a ExonRegion 0 2.12 0.00 1.63 1.36 8.03 13.45 1.77 6.34 7.82 5.73 3.22 5.77 1.56 1.62 1.93 0.00 4.40 1.23 2.12 4.26 0.73 9.72 8.81 24 ER5b ExonRegion 0 15.33 8.58 8.52 10.34 11.13 39.34 9.74 23.17 25.56 22.62 20.44 18.11 11.78 12.22 3.57 7.03 16.18 12.89 2.95 14.97 4.89 36.28 21.27 25 E5_Da NovelBoundary 1 0.00 0.00 0.00 2.06 0.00 0.00 4.50 0.00 1.33 1.05 0.00 19.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E5a_E6a KnownJunction 0 13.85 17.30 13.28 16.81 19.02 19.08 9.80 21.28 40.60 31.54 27.48 25.96 25.97 9.65 4.45 3.50 12.90 19.48 0.00 11.06 5.62 49.72 15.79 27 ER6a ExonRegion 1 14.60 10.71 10.27 14.21 28.53 35.76 12.48 23.31 34.51 23.21 23.68 58.32 18.35 16.60 4.48 10.53 18.25 20.46 4.78 16.49 11.83 44.98 26.99 28 E6a_E7a KnownJunction 0 0.00 0.00 2.48 1.37 3.57 10.51 0.00 0.00 1.13 0.00 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 4.27 29 E6a_E8b KnownJunction 1 19.48 19.14 10.17 17.88 23.77 35.04 9.98 26.99 34.06 20.12 12.27 48.32 13.64 23.31 8.90 7.86 22.25 14.38 0.00 17.64 26.44 46.54 30.56 30 ER7a ExonRegion 0 4.38 2.07 4.18 0.91 4.14 3.37 0.70 4.07 2.58 1.32 4.43 2.67 3.98 2.71 0.00 0.00 0.00 1.14 0.00 2.19 1.20 3.11 8.34 31 E7_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 5.21 2.55 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 4.05 0.00 0.00 0.00 10.93 32 E7a_E8b KnownJunction 0 0.00 0.00 3.49 0.00 3.90 2.78 1.68 3.98 1.27 2.69 4.95 6.30 0.00 0.00 0.00 0.00 0.00 3.73 0.00 0.00 0.00 2.33 8.62 33 ER8a ExonRegion 0 15.87 6.10 7.35 8.18 14.72 14.67 7.94 14.69 17.91 13.76 10.63 28.14 9.38 11.37 5.80 5.94 9.90 10.16 1.59 9.57 12.12 22.92 16.15 34 ER8b ExonRegion 0 33.38 16.35 19.35 17.04 24.64 45.96 14.76 17.27 32.50 24.96 29.94 34.01 18.47 22.03 8.78 10.88 33.40 24.62 12.21 12.88 25.84 49.14 36.50 35 E8_Da KnownBoundary 0 24.75 12.30 28.59 22.44 12.99 44.35 14.53 24.11 27.17 12.95 20.16 23.71 18.67 26.61 9.64 3.59 37.68 25.37 27.01 14.00 29.71 46.66 51.73 36 E8a_E8c KnownJunction 0 2.82 0.00 0.00 3.76 3.14 16.92 0.00 0.00 2.95 1.56 4.58 6.30 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER8c ExonRegion 0 21.94 10.68 18.02 11.30 17.50 41.49 10.23 26.64 25.82 19.47 29.95 30.72 27.04 20.21 10.72 14.95 42.98 30.37 13.65 12.18 29.54 38.58 40.14 38 E8_Ac KnownBoundary 0 35.64 36.38 10.79 17.85 58.32 46.68 15.10 30.03 23.12 28.77 38.11 41.41 32.79 14.30 4.45 3.42 39.74 12.81 4.80 3.20 49.24 40.72 31.84 39 ER8d ExonRegion 0 22.03 16.53 13.59 15.17 28.03 37.34 17.33 17.81 24.08 21.22 31.92 35.49 32.45 21.04 9.85 4.42 34.24 15.77 7.26 6.83 30.52 25.97 23.87 40 E8_Db KnownBoundary 0 37.78 27.63 19.01 19.08 36.08 109.88 17.67 37.05 34.40 28.55 49.28 30.91 32.14 19.19 10.26 17.43 24.50 28.06 10.92 6.01 41.58 36.80 26.21 41 E8b_E8d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER8e ExonRegion 0 40.37 20.46 21.65 17.47 34.01 79.74 15.79 30.64 25.28 25.35 40.18 33.52 35.81 17.35 13.36 18.55 29.76 23.54 20.42 7.51 31.79 27.69 28.17 43 E8_Ad KnownBoundary 0 37.27 17.56 26.73 16.81 37.10 47.53 7.99 23.00 26.22 21.41 22.64 31.96 19.64 14.66 4.45 7.95 31.14 15.05 17.13 11.76 17.73 11.39 28.00 44 ER8f ExonRegion 0 35.78 19.42 27.07 18.55 35.43 59.75 15.73 26.29 23.98 19.77 29.83 27.12 30.18 17.81 15.88 10.99 27.48 17.52 9.85 13.47 21.04 28.70 32.03 45 E8c_E9a KnownJunction 0 34.67 19.14 29.60 9.66 26.91 32.48 10.16 18.44 17.59 20.63 26.74 23.86 0.00 4.83 8.90 4.10 23.00 12.15 4.80 6.39 5.81 18.98 40.12 46 ER9a ExonRegion 0 38.84 10.65 26.11 13.79 17.99 45.03 12.40 19.48 16.15 18.78 17.54 11.19 3.59 12.08 14.84 6.78 16.38 15.04 6.03 9.26 16.30 18.53 19.70 47 E9_Da KnownBoundary 0 3.26 3.35 8.16 6.76 3.57 7.21 3.89 6.00 2.78 3.92 0.00 0.00 12.99 2.12 10.38 0.00 0.00 1.66 0.00 3.07 0.00 2.45 10.93 48 ER9b ExonRegion 0 2.07 4.65 2.00 2.56 0.95 13.34 3.12 1.34 0.31 0.57 0.00 1.27 0.85 1.17 0.85 0.00 1.29 0.12 1.14 1.52 0.02 0.93 2.65 49 ER9c ExonRegion 0 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00