Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF25 Gene 0 5.24 9.65 2.98 3.51 5.94 23.11 5.60 8.70 17.41 9.12 6.02 2.82 3.07 2.76 0.86 4.32 2.82 12.66 10.41 12.73 5.29 6.64 8.93 2 302609 Transcript 0 3.74 8.16 2.09 1.72 3.48 6.67 1.46 3.40 4.65 3.22 0.45 0.74 0.12 0.16 0.12 0.08 0.00 0.53 0.61 2.17 0.22 1.38 2.37 3 374633 Transcript 0 3.79 0.24 1.52 1.20 0.00 2.59 4.43 5.48 5.12 1.97 0.14 0.00 0.00 0.09 0.00 0.04 0.00 1.75 10.65 7.21 1.72 1.18 4.35 4 467975 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.82 1.78 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.02 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.00 6.10 0.00 0.00 0.76 7.60 1.13 0.00 0.71 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.30 2.94 6 ER1b ExonRegion 0 4.29 24.00 0.07 0.93 9.25 67.90 10.40 2.67 5.33 3.28 3.76 0.00 0.00 3.67 1.91 4.08 0.28 18.32 29.03 6.50 6.61 7.02 25.34 7 E1_Ac KnownBoundary 0 12.52 54.20 0.00 1.37 20.03 147.24 15.37 1.56 8.28 2.79 8.48 0.00 0.00 7.89 4.45 11.36 0.00 27.82 54.21 15.66 10.19 12.49 42.94 8 ER1c ExonRegion 0 13.59 37.98 6.61 3.36 6.91 151.89 28.93 19.82 25.20 15.11 11.15 0.00 0.16 5.59 4.59 12.34 1.84 89.70 84.93 23.50 23.42 18.53 85.23 9 E1a_E2a KnownJunction 0 14.82 0.00 1.21 0.00 3.48 32.37 2.25 11.42 19.24 5.75 0.00 0.00 0.00 2.35 0.00 7.18 0.00 19.94 4.42 17.96 8.34 7.35 31.67 10 I1_AR1 ActiveIntronRegion 0 1.08 4.67 1.84 2.81 0.87 9.29 4.72 4.50 11.24 6.39 4.62 1.68 0.45 2.40 0.58 4.06 3.95 19.89 3.50 14.81 4.93 1.40 3.40 11 I1_SR1 SilentIntronRegion 0 2.33 12.51 2.13 6.01 3.35 8.26 9.98 5.70 21.36 9.15 2.51 2.00 3.09 3.14 1.63 3.66 2.14 14.62 1.19 18.68 5.47 1.51 3.55 12 I1_AR2 ActiveIntronRegion 0 1.25 12.30 4.26 6.01 1.32 15.51 10.48 4.22 24.50 5.68 2.28 2.98 3.61 0.64 0.00 3.95 8.01 8.63 0.16 13.74 1.23 1.57 0.91 13 I1_SR2 SilentIntronRegion 0 3.12 11.17 4.95 7.01 6.30 10.22 9.12 8.55 13.96 6.85 2.75 3.41 4.09 1.97 1.39 4.11 5.08 7.38 7.29 16.21 2.90 1.75 4.61 14 I1_AR3 ActiveIntronRegion 0 12.84 8.91 9.08 11.93 14.78 18.70 11.75 11.97 15.41 9.19 3.16 10.20 9.16 3.75 3.31 2.83 8.51 5.16 11.37 21.04 7.50 8.68 5.08 15 E2_Aa NovelBoundary 0 2.82 18.22 1.83 12.05 19.61 14.99 4.02 22.02 14.41 12.63 0.00 10.80 19.48 2.88 0.00 3.50 0.00 11.28 4.80 9.52 5.99 2.33 4.35 16 ER2a ExonRegion 0 7.30 19.81 5.32 7.01 6.34 53.58 12.95 24.58 58.20 28.96 20.88 10.52 13.79 13.38 4.53 18.16 5.68 55.99 31.82 51.74 33.01 11.31 26.02 17 E2_Da NovelBoundary 0 7.48 3.35 1.74 7.72 16.81 8.18 8.92 4.60 15.57 6.50 0.00 0.00 6.17 2.47 0.00 15.72 0.00 0.00 41.04 3.26 11.43 5.51 15.96 18 E2a_E3a KnownJunction 0 0.00 0.00 1.60 1.76 0.00 0.00 2.12 2.55 1.27 3.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.40 3.26 2.97 0.00 4.18 19 E2a_E4a KnownJunction 0 0.00 42.03 14.37 2.96 24.45 20.33 9.80 43.46 80.82 36.67 19.06 12.60 0.00 21.78 15.45 23.75 4.39 94.02 73.04 62.19 24.59 37.47 59.07 20 E3a_E4a KnownJunction 0 7.33 0.00 2.69 0.00 0.00 6.59 8.13 8.34 9.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 4.80 9.78 0.00 2.45 4.01 21 ER3a ExonRegion 0 4.05 0.71 0.27 1.84 0.00 1.20 3.05 5.56 4.67 2.39 0.42 0.00 0.00 0.28 0.00 0.13 0.00 1.29 12.74 8.60 2.20 1.09 4.85 22 I3 Intron 0 12.62 11.77 5.64 10.59 16.25 14.05 10.24 17.47 20.65 12.49 3.50 4.75 10.75 2.03 2.08 6.04 3.94 10.10 10.06 13.07 6.03 5.66 7.46 23 I3_AR1 ActiveIntronRegion 0 12.77 11.47 5.18 12.84 14.80 13.45 13.88 22.54 26.75 13.80 4.42 4.42 13.35 3.02 2.58 6.37 5.75 14.48 12.93 14.65 10.63 4.30 9.56 24 I3_SR2 SilentIntronRegion 0 11.89 11.32 3.77 6.72 25.50 19.61 11.17 18.32 13.95 13.49 2.99 1.62 6.94 1.32 2.22 8.58 6.32 14.64 14.58 7.35 7.50 1.90 6.83 25 I3_AR3 ActiveIntronRegion 0 21.33 17.77 7.89 8.56 21.46 10.18 11.84 20.13 23.28 14.76 4.17 8.01 10.67 3.04 4.14 9.47 1.36 9.93 9.16 17.06 4.99 7.71 11.17 26 I3_SR3 SilentIntronRegion 0 9.98 11.13 9.31 19.96 15.31 19.62 7.58 18.90 32.74 14.67 4.33 6.59 14.45 1.98 0.62 4.44 4.52 8.47 6.74 19.85 3.28 11.40 4.02 27 I3_AR4 ActiveIntronRegion 0 12.95 11.82 2.95 7.21 9.50 26.04 9.83 19.12 15.45 13.23 3.74 6.00 7.75 0.43 0.66 0.96 5.33 7.12 12.28 12.32 5.68 6.73 7.58 28 E4_Aa NovelBoundary 0 24.15 27.36 14.81 18.35 7.56 27.82 9.89 42.39 39.61 25.71 9.37 5.40 13.31 0.00 5.19 0.00 8.32 21.39 19.95 10.99 11.37 5.02 14.77 29 ER4a ExonRegion 0 19.55 38.09 10.15 20.86 38.32 106.36 26.63 60.97 131.05 61.28 46.65 33.89 18.13 20.22 4.55 24.39 29.45 99.31 85.43 105.21 40.15 42.01 83.91 30 E4a_E5a KnownJunction 0 49.19 32.30 27.47 28.67 52.38 304.82 45.18 63.87 151.94 47.76 48.28 30.46 33.76 27.25 4.45 45.80 30.29 77.93 110.50 103.35 38.18 35.64 36.71 31 ER5a ExonRegion 0 30.18 81.62 22.50 28.22 51.01 239.48 47.46 68.35 164.14 80.70 60.66 17.23 33.12 22.21 7.92 37.55 32.73 87.13 75.02 110.33 54.52 52.87 44.63 32 E5a_E6a KnownJunction 0 26.75 64.66 15.40 21.68 56.79 169.79 52.64 70.77 154.28 87.27 40.64 13.65 59.25 29.61 0.00 49.22 40.77 56.17 46.68 129.82 35.89 56.95 33.80 33 E6_Aa NovelBoundary 0 0.00 0.00 0.00 3.63 12.48 33.90 7.86 4.11 5.53 1.10 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 34 ER6a ExonRegion 0 28.61 47.60 17.81 22.21 37.59 165.56 45.61 68.98 143.06 68.08 61.88 22.66 44.41 28.57 6.03 37.34 31.82 88.98 65.75 115.26 47.24 55.28 55.38 35 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.26 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 36 E6a_E8a KnownJunction 0 41.19 55.38 22.77 40.79 26.23 192.05 33.74 60.91 171.15 66.24 80.86 36.31 49.67 47.91 4.94 36.57 21.88 97.83 105.98 111.22 47.26 85.18 93.73 37 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.66 2.53 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.05 0.00 0.00 0.00 38 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER8a ExonRegion 0 9.95 19.94 11.93 18.09 18.57 61.25 16.06 32.71 79.58 44.48 31.55 8.83 14.64 15.05 4.28 29.29 11.76 54.06 44.67 57.09 14.45 43.52 30.83 40 E8_Da KnownBoundary 0 9.63 20.98 5.41 10.75 19.10 61.10 19.25 23.25 37.50 20.71 2.58 24.91 6.49 18.48 0.00 27.51 0.00 49.12 29.46 24.16 0.00 48.37 33.97 41 ER8b ExonRegion 0 1.48 2.17 0.26 0.15 0.81 5.44 1.63 0.46 0.42 0.17 0.00 0.18 0.18 0.07 0.00 0.32 0.07 0.89 0.34 0.30 0.18 0.36 0.44 42 E8_Db KnownBoundary 0 76.83 78.14 29.57 25.34 53.23 69.96 34.14 42.39 33.97 28.21 15.42 0.00 0.00 0.00 0.00 11.36 13.28 50.16 23.91 33.24 10.93 9.49 16.56 43 ER8c ExonRegion 0 7.48 10.23 4.19 3.44 6.19 5.74 1.79 6.81 8.58 5.78 0.89 1.49 0.24 0.32 0.24 0.15 0.00 1.07 1.22 4.04 0.45 2.46 1.81