Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C10orf10 Gene 0 162.77 4.42 158.00 58.76 56.85 20.06 13.80 103.14 132.97 10.51 10.52 3.24 2.25 14.98 6.27 2.34 24.07 0.99 4.25 1.46 2.22 30.29 13.57 2 298295 Transcript 0 190.55 4.09 189.14 55.45 50.13 21.11 12.18 117.99 158.70 10.98 6.91 4.45 1.85 14.98 6.67 2.79 23.10 1.21 7.22 0.92 0.98 38.69 16.09 3 496638 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 4 448778 Transcript 0 9.83 0.76 6.22 1.87 6.02 1.42 0.01 5.99 6.59 0.04 5.00 0.01 0.84 3.70 1.22 0.00 6.42 0.01 1.44 0.00 0.69 1.81 0.04 5 432283 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 244.51 6.97 41.95 14.15 69.70 29.08 16.39 28.23 44.35 2.40 4.05 0.00 0.00 2.78 1.93 1.27 8.65 0.00 10.47 0.00 0.00 21.73 11.47 7 ER1b ExonRegion 0 685.75 16.27 115.18 38.16 195.33 78.85 43.69 76.05 128.45 8.03 7.73 0.00 0.00 6.50 5.80 2.97 23.11 0.00 31.85 0.00 0.00 68.76 35.24 8 ER1c ExonRegion 0 253.65 5.11 114.10 34.97 79.19 32.05 17.76 81.62 121.47 7.07 12.23 0.20 0.00 11.25 5.38 2.49 23.82 0.70 11.79 2.54 2.05 35.91 16.13 9 E1_Da NovelBoundary 0 7.33 0.00 12.89 5.79 0.00 0.00 2.12 5.18 16.38 0.00 17.90 0.00 0.00 9.36 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.57 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E2b KnownJunction 0 52.23 0.00 240.94 42.88 4.33 8.01 1.90 139.04 185.13 10.02 0.00 5.85 0.00 5.36 4.45 3.93 18.05 1.74 9.13 0.00 0.00 39.01 12.21 12 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Aa NovelBoundary 0 61.49 0.00 12.45 5.03 10.53 0.00 0.00 20.50 22.37 1.13 23.27 0.00 6.17 16.54 0.00 8.54 18.23 0.00 13.18 0.00 0.00 5.88 0.00 14 ER2a ExonRegion 0 19.66 1.52 12.45 3.74 12.05 2.83 0.02 11.97 13.18 0.08 10.00 0.03 1.68 7.40 2.44 0.00 12.84 0.01 2.88 0.00 1.38 3.61 0.09 15 E2_Ab KnownBoundary 0 38.38 6.18 6.36 3.66 15.53 0.00 0.00 8.91 9.58 0.00 7.00 0.00 13.31 9.54 4.45 0.00 9.35 0.00 4.05 0.00 0.00 0.00 0.00 16 E2_Ac KnownBoundary 0 85.20 0.00 240.12 50.58 8.57 5.17 2.25 136.78 172.34 10.88 7.58 0.00 0.00 21.13 5.56 7.52 9.35 0.00 37.74 3.26 5.31 100.61 27.06 17 ER2b ExonRegion 0 72.89 2.85 218.80 54.52 15.20 6.38 1.96 135.23 176.97 10.87 7.96 4.33 4.69 16.89 7.43 3.33 22.45 0.74 22.68 1.87 2.91 76.17 20.67 18 ER2c ExonRegion 0 160.32 7.87 231.37 57.80 59.14 28.75 18.55 102.01 161.72 11.99 11.57 1.54 0.96 23.01 8.67 5.58 20.99 0.57 5.28 2.06 2.80 35.23 16.35 19 E2_Da KnownBoundary 0 295.76 2.76 153.99 63.99 27.67 9.65 10.07 56.56 109.46 7.68 6.53 6.75 0.00 10.65 0.00 4.36 13.00 0.00 0.00 2.68 2.29 5.27 8.37 20 E2a_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2_Db KnownBoundary 0 443.34 2.50 152.60 52.77 39.73 18.97 5.96 85.02 102.81 13.97 7.69 0.00 0.00 6.77 5.93 0.00 12.62 0.00 8.56 3.26 0.00 14.27 24.50 22 ER2d ExonRegion 0 475.16 6.10 287.15 96.76 40.14 26.59 11.25 117.53 202.56 16.06 13.53 4.33 4.69 23.01 11.61 2.97 26.96 0.00 6.37 4.26 2.20 19.79 23.49 23 ER2e ExonRegion 0 216.61 3.21 243.33 69.40 36.80 18.39 9.38 146.59 213.10 16.10 7.35 6.13 3.42 31.30 11.39 2.56 29.25 1.40 4.79 1.57 0.82 50.05 20.77 24 E2_Ad KnownBoundary 0 149.14 0.00 319.24 99.25 34.89 27.20 18.72 239.71 335.21 16.82 14.37 0.00 0.00 31.96 14.96 0.00 23.75 4.15 22.40 0.00 7.97 79.30 31.67 25 ER2f ExonRegion 0 119.84 6.69 247.69 82.48 62.62 24.67 19.99 174.78 240.82 24.23 7.65 2.05 0.62 20.17 8.26 0.00 38.45 1.15 8.74 1.37 4.20 35.86 17.94 26 E2_Dc KnownBoundary 0 190.77 17.63 336.45 100.79 72.75 15.62 29.32 277.66 337.21 24.07 9.58 6.30 12.34 24.02 8.90 0.00 33.10 2.57 9.22 0.00 5.75 41.88 12.46 27 ER2g ExonRegion 0 248.84 6.17 230.35 95.35 89.71 28.97 21.03 158.10 192.23 15.40 16.24 5.81 3.99 20.47 8.89 3.41 36.46 1.69 4.49 2.13 3.09 43.99 19.93 28 E2_Dd NovelBoundary 0 0.00 0.00 7.07 1.53 0.00 8.40 3.84 2.55 11.40 1.24 11.85 0.00 0.00 7.65 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 29 E3_Aa NovelBoundary 0 66.38 0.00 9.73 20.31 54.33 58.15 10.38 48.26 63.14 14.96 64.86 0.00 25.97 56.57 13.35 3.33 69.75 0.00 0.00 3.26 20.08 0.00 4.35 30 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00