Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-291L22.1 Gene 0 8.76 16.13 8.71 16.10 14.46 13.57 25.07 18.02 17.01 14.46 13.27 25.82 23.71 18.17 11.72 21.24 20.25 12.30 11.26 22.61 3.95 8.26 7.56 2 489259 Transcript 0 0.70 1.06 0.60 0.27 1.92 1.32 0.35 0.51 1.80 0.34 0.63 0.98 1.52 1.25 2.06 1.17 1.73 1.08 0.42 0.97 0.14 0.00 0.19 3 496964 Transcript 0 1.94 5.13 5.40 5.43 3.40 2.29 9.65 9.79 5.58 8.69 5.07 10.80 13.14 8.90 10.11 11.28 10.86 4.65 15.01 14.17 2.69 0.48 1.24 4 489046 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 497392 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 476473 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.97 1.08 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 475691 Transcript 0 0.00 0.00 0.00 2.06 0.00 19.99 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 468615 Transcript 0 16.81 29.74 16.37 31.06 20.59 15.44 68.67 25.78 34.18 22.94 15.93 50.45 41.25 34.29 24.92 37.05 39.99 15.85 10.29 34.33 4.92 26.98 12.34 9 239730 Transcript 0 3.40 0.00 0.59 0.00 2.09 0.00 0.29 0.00 0.19 1.52 0.00 0.00 5.20 3.71 0.06 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 10 474003 Transcript 1 5.05 3.13 5.32 7.53 4.12 4.38 12.12 7.34 13.07 10.77 4.96 18.16 30.85 13.56 5.04 11.36 12.95 5.18 4.89 14.54 1.50 5.32 4.01 11 328105 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 1.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 1.53 7.64 2.44 0.00 3.94 0.00 0.00 2.16 0.00 0.00 0.00 4.45 3.76 8.88 0.00 4.24 0.00 2.72 0.00 0.00 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 16 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.58 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 18 ER1d ExonRegion 0 5.87 7.55 0.68 0.00 1.37 11.60 13.86 4.73 1.13 3.04 3.12 0.00 0.00 0.20 0.00 7.28 1.55 5.69 1.63 1.17 1.17 0.00 3.00 19 E1_Ae KnownBoundary 0 78.83 60.65 35.72 60.57 74.96 151.62 96.94 88.84 53.38 49.26 41.12 0.00 0.00 2.12 12.24 74.00 41.33 75.69 35.95 69.86 16.43 20.21 50.53 20 ER1e ExonRegion 0 5.66 11.92 3.27 1.44 3.48 10.36 9.63 6.23 2.34 5.70 6.60 1.66 4.76 9.71 4.07 2.41 9.25 12.25 6.80 7.45 2.86 0.49 2.62 21 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 2.10 0.00 2.14 1.79 1.56 0.00 0.00 0.00 15.30 0.00 4.19 0.00 8.66 25.98 5.56 0.00 0.00 0.00 22 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER1f ExonRegion 0 0.18 2.63 0.26 1.76 0.00 0.00 0.39 0.00 1.80 0.57 0.00 2.16 0.00 8.32 0.00 1.36 4.81 2.69 3.19 2.93 0.00 0.00 1.47 27 ER2a ExonRegion 0 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER2b ExonRegion 0 0.00 5.01 0.02 0.05 0.15 0.00 0.00 0.00 0.88 0.06 0.00 0.00 5.95 0.11 1.42 0.00 0.06 0.00 0.15 0.00 0.11 0.00 0.00 29 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER2c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 1.93 2.16 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E3_Aa NovelBoundary 1 24.37 2.96 20.02 28.60 36.50 8.69 23.89 23.21 25.78 18.80 22.95 65.72 105.03 27.61 6.18 21.70 62.83 2.57 8.75 32.34 0.00 23.39 17.33 34 ER3a ExonRegion 1 2.07 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.07 1.89 39.22 0.00 15.20 6.61 5.88 3.23 0.00 0.00 0.00 0.00 2.04 0.00 35 E3_Da NovelBoundary 0 20.52 13.35 19.40 32.06 28.35 0.00 29.54 26.12 27.08 12.79 25.16 45.16 54.05 26.66 36.71 11.96 35.62 7.75 13.27 30.68 0.00 24.43 12.98 36 E3a_E4b NovelJunction 0 0.00 0.00 9.08 10.22 0.00 0.00 0.00 17.17 12.21 4.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 0.00 0.00 0.00 37 E3a_E4c KnownJunction 0 0.00 0.00 5.17 18.18 0.00 0.00 0.00 17.74 10.59 13.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.60 0.00 0.00 0.00 0.00 0.00 38 E4_Aa NovelBoundary 0 0.00 0.00 1.39 16.98 15.79 8.69 21.07 7.23 15.02 10.26 2.63 32.86 26.62 14.48 4.45 7.52 3.65 3.86 4.80 5.82 2.78 26.02 12.21 39 ER4a ExonRegion 1 5.05 3.13 5.32 7.53 4.12 4.38 12.12 7.34 13.07 10.77 4.96 18.16 30.85 13.56 5.04 11.36 12.95 5.18 4.89 14.54 1.50 5.32 4.01 40 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 2.30 1.79 0.00 5.37 0.00 6.82 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E4_Ac KnownBoundary 0 96.83 209.50 208.30 248.69 336.25 440.03 366.02 221.14 263.51 216.00 376.78 215.47 239.27 223.03 133.38 202.25 365.22 192.55 86.87 234.51 141.04 243.28 91.59 42 ER4b ExonRegion 0 0.47 2.71 5.85 5.75 3.57 0.82 9.71 6.53 9.19 5.10 8.38 2.41 23.45 5.23 0.64 11.89 0.73 0.21 1.06 7.33 0.00 0.46 0.00 43 ER4c ExonRegion 0 34.98 44.54 15.03 32.92 60.16 59.23 82.45 45.68 27.77 24.72 41.82 74.46 42.00 47.15 18.24 55.56 54.19 25.71 33.67 63.97 8.48 18.68 24.69 44 E4a_E5a KnownJunction 0 0.00 0.00 2.96 0.00 11.63 2.61 2.08 1.85 1.36 0.00 2.58 0.00 0.00 4.94 5.56 0.00 4.49 0.00 0.00 0.00 0.00 5.57 0.00 45 ER5a ExonRegion 0 26.82 71.73 27.78 78.52 57.64 62.97 70.17 80.84 65.43 65.22 69.26 91.02 65.83 69.60 46.25 97.62 78.78 57.58 39.69 95.59 22.41 28.46 36.31 46 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E5a_E6a KnownJunction 0 45.64 126.95 49.26 116.14 169.35 107.44 148.92 136.28 80.41 68.82 125.98 202.12 105.84 94.71 64.65 148.42 81.16 60.81 121.23 182.99 18.72 40.84 41.49 48 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E5a_E6c KnownJunction 0 0.00 0.00 0.00 2.06 0.00 19.99 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER5b ExonRegion 1 2.01 7.07 9.84 28.34 13.15 10.19 41.29 20.36 35.96 25.68 17.17 38.01 31.64 21.75 16.52 14.31 44.87 14.16 14.15 30.08 8.59 19.60 4.08 53 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER5c ExonRegion 0 16.81 29.74 16.37 31.06 20.59 15.44 68.67 25.78 34.18 22.94 15.93 50.45 41.25 34.29 24.92 37.05 39.99 15.85 10.29 34.33 4.92 26.98 12.34 55 E5_Dc NovelBoundary 0 32.89 31.84 22.38 27.34 42.53 25.95 90.18 46.95 41.84 14.29 15.00 12.45 42.37 36.26 4.94 42.47 45.63 16.62 9.41 52.67 3.15 27.56 28.08 56 E6_Ab NovelBoundary 0 3.78 10.00 1.80 5.76 8.66 0.00 9.01 2.51 6.66 6.39 5.37 0.00 0.00 3.00 6.30 0.00 9.54 2.53 0.00 0.00 0.00 0.00 13.06 57 E6_Ac NovelBoundary 0 110.83 173.39 137.75 242.36 207.81 118.74 234.95 199.58 101.88 130.23 113.50 103.68 93.34 66.40 26.82 137.83 110.33 91.16 82.92 199.74 51.95 49.35 55.66 58 ER6a ExonRegion 1 49.28 117.66 44.64 102.80 137.23 87.24 142.61 122.97 80.99 62.10 91.40 171.94 83.75 92.11 60.93 159.65 49.98 62.30 101.02 148.33 18.26 38.69 49.08 59 ER6b ExonRegion 1 44.09 97.27 44.22 94.15 129.10 77.02 128.87 118.40 76.37 59.45 69.58 163.44 79.73 74.03 46.66 136.47 40.71 56.82 88.92 119.68 14.14 28.65 46.74 60 ER6c ExonRegion 1 19.90 38.95 38.67 59.17 45.45 31.06 53.02 77.35 54.19 42.70 37.77 68.21 47.69 27.64 18.52 60.68 19.60 37.52 39.40 60.98 6.17 16.48 25.21 61 E6_Da KnownBoundary 0 0.00 6.71 7.30 14.08 0.00 2.90 2.16 9.82 25.93 8.17 5.37 0.00 0.00 0.00 0.00 4.36 0.00 2.57 14.40 3.26 0.00 0.00 0.00 62 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E6_Db KnownBoundary 0 6.96 6.05 6.12 20.64 0.00 2.56 8.13 17.33 9.90 10.91 5.00 0.00 6.82 2.47 26.08 24.69 21.79 2.24 4.80 15.72 3.15 5.45 0.00 64 ER6d ExonRegion 1 9.52 24.74 31.04 30.89 6.24 20.17 37.95 45.80 27.58 30.78 19.33 65.66 66.44 31.67 30.46 55.98 12.65 14.78 35.04 56.03 4.41 12.85 17.62 65 ER6e ExonRegion 0 3.88 10.27 10.80 10.86 6.81 4.58 19.31 19.58 11.16 17.38 10.13 21.61 26.27 17.80 20.22 22.57 21.73 9.29 30.03 28.34 5.37 0.95 2.48 66 E6_Dc NovelBoundary 0 53.57 5.26 34.53 69.95 23.17 17.49 57.28 57.26 70.02 44.03 14.06 6.00 45.29 12.54 31.52 24.01 29.92 16.79 25.79 22.63 51.77 30.31 48.57 67 ER7a ExonRegion 0 2.09 3.19 1.79 0.80 5.77 3.96 1.04 1.52 5.39 1.01 1.90 2.95 4.55 2.94 4.49 3.50 5.18 3.24 1.25 2.92 0.43 0.00 0.58 68 E7_Da NovelBoundary 0 3.19 12.30 2.69 0.00 4.33 0.00 0.00 11.05 6.92 4.84 2.53 0.00 7.30 4.47 0.00 3.93 17.77 5.06 0.00 2.94 3.09 0.00 0.00 69 ER8a ExonRegion 1 2.06 2.23 2.86 0.62 2.43 0.00 0.65 1.40 2.47 1.94 0.54 1.27 18.13 0.91 1.91 0.91 7.10 1.05 0.03 2.90 0.00 0.03 0.00 70 E8_Da KnownBoundary 0 6.67 0.00 4.17 0.00 3.90 0.00 1.81 0.00 2.58 3.17 0.00 0.00 6.82 0.00 0.00 0.00 3.65 0.00 0.00 2.75 0.00 0.00 0.00 71 ER8b ExonRegion 0 3.40 0.00 0.59 0.00 2.09 0.00 0.29 0.00 0.19 1.52 0.00 0.00 5.20 3.71 0.06 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 72 IG27 Intergenic 0 13.24 11.87 10.65 8.32 7.66 4.32 6.20 11.92 6.30 9.11 11.44 3.88 25.91 7.01 10.41 13.17 10.92 4.85 2.32 6.68 1.30 4.15 1.81 73 IG27_AR3 ActiveIntergenicRegion 0 14.38 13.04 22.86 23.87 18.91 8.60 14.29 22.71 14.69 21.44 9.20 17.62 52.08 11.70 20.51 11.27 16.62 0.00 2.64 13.21 0.00 8.05 5.47 74 IG27_AR2 ActiveIntergenicRegion 0 24.11 25.21 15.49 12.38 14.63 4.25 8.77 22.35 11.95 12.00 17.77 6.66 45.23 7.39 11.72 11.34 9.08 2.79 1.40 11.55 2.06 4.71 3.41 75 IG27_SR1 SilentIntergenicRegion 0 20.58 13.74 17.37 15.02 9.79 7.94 11.17 17.92 10.04 17.53 21.42 3.39 45.41 14.62 17.35 33.49 22.55 15.30 6.34 12.43 2.98 9.42 2.72 76 IG27_AR1 ActiveIntergenicRegion 0 1.64 0.00 0.00 0.00 2.07 0.00 2.05 0.00 0.00 0.00 7.47 0.00 5.97 7.06 3.82 0.00 7.65 1.43 0.00 1.64 0.00 0.00 0.00