Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAP3K8 Gene 0 97.13 2.10 12.55 12.94 29.15 10.27 10.09 18.00 24.17 4.80 154.23 98.97 86.87 107.86 84.23 69.19 98.54 0.08 0.73 1.43 2.97 61.36 29.52 2 263056 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 375328 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 415139 Transcript 0 6.67 0.00 6.42 0.00 0.00 5.05 1.81 4.64 2.60 0.00 24.64 0.00 0.00 26.25 9.64 11.54 15.80 1.87 0.00 0.00 0.00 0.00 17.41 5 375322 Transcript 1 38.63 2.35 20.09 4.84 7.21 2.52 3.18 17.47 18.92 1.07 106.62 110.71 36.77 39.42 53.16 26.31 41.93 0.00 0.00 0.00 0.60 14.22 10.61 6 413724 Transcript 0 6.43 0.00 2.69 0.62 4.07 1.67 4.22 3.03 1.61 0.00 16.59 1.08 3.92 22.00 23.20 11.75 9.82 0.00 0.00 0.00 1.34 8.78 6.24 7 375321 Transcript 0 83.10 1.13 4.77 4.26 9.80 1.74 4.39 11.32 8.78 2.05 36.93 47.21 40.09 18.81 16.83 9.98 11.29 0.00 0.00 2.08 0.16 12.26 6.03 8 430603 Transcript 0 13.77 0.87 0.00 1.42 2.29 0.00 4.71 0.00 0.95 0.00 3.00 1.86 13.64 4.05 4.66 3.50 8.29 0.00 0.00 0.00 0.94 1.44 0.02 9 ER1a ExonRegion 0 3.92 0.00 1.00 0.01 0.00 0.49 0.70 0.00 0.65 0.01 13.48 0.89 4.39 8.71 5.55 10.29 14.83 0.00 0.06 0.55 0.00 1.68 2.74 10 E1_Ab KnownBoundary 0 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 6.42 10.75 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.10 11 ER1b ExonRegion 1 17.28 0.00 4.47 0.99 2.13 6.64 1.23 0.00 7.77 0.82 70.65 0.00 7.42 43.14 23.97 29.32 56.28 0.00 1.45 1.05 0.00 9.93 13.88 12 E1_Ac KnownBoundary 0 0.00 0.00 6.33 0.00 7.13 4.66 0.00 3.94 2.34 0.00 56.01 0.00 6.82 38.20 19.28 10.77 21.41 0.00 0.00 0.00 0.00 2.45 11.18 13 ER1c ExonRegion 1 2.53 0.00 4.84 1.55 2.48 1.07 0.00 1.56 4.91 0.15 58.88 0.29 9.56 59.47 28.06 38.50 38.77 0.00 1.21 0.00 0.02 9.08 12.84 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.97 0.00 1.32 32.11 0.00 13.64 41.26 24.85 34.44 12.72 0.00 0.00 0.00 0.00 11.21 3.67 15 E1a_E4b KnownJunction 0 6.67 0.00 6.42 0.00 0.00 5.05 1.81 4.64 2.60 0.00 24.64 0.00 0.00 26.25 9.64 11.54 15.80 1.87 0.00 0.00 0.00 0.00 17.41 16 I1 Intron 0 7.55 0.00 1.30 1.45 0.95 2.62 1.42 1.84 2.95 0.00 24.13 1.82 2.07 32.95 18.20 10.60 20.60 0.49 0.57 0.00 2.75 4.46 5.24 17 I1_AR1 ActiveIntronRegion 0 7.60 0.00 1.31 1.46 0.96 2.63 1.43 1.85 2.97 0.00 24.30 1.83 2.08 33.17 18.32 10.67 20.75 0.49 0.57 0.00 2.77 4.49 5.27 18 E2_Aa NovelBoundary 0 13.48 0.00 0.00 1.96 15.79 0.00 1.77 8.79 7.67 1.67 39.69 6.15 0.00 48.62 15.20 24.87 38.06 0.00 0.00 2.94 5.75 13.29 21.26 19 ER2a ExonRegion 0 12.85 0.00 1.06 1.23 4.49 3.34 4.46 3.68 2.09 0.00 28.56 2.16 0.06 41.53 24.14 23.49 15.52 0.00 0.00 0.00 2.68 14.86 12.48 20 E2a_E3a NovelJunction 0 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 40.33 0.00 0.00 15.25 17.80 11.19 18.05 0.00 0.00 0.00 0.00 2.33 0.00 21 E2a_E4b KnownJunction 0 0.00 0.00 4.32 0.00 3.65 0.00 3.97 2.38 1.13 0.00 4.63 0.00 7.79 2.47 22.25 0.00 4.11 0.00 0.00 0.00 0.00 2.69 0.00 22 I2 Intron 0 44.52 0.48 10.64 5.09 14.26 5.56 7.16 15.14 17.79 2.81 91.26 63.13 79.76 79.60 28.45 46.59 65.72 0.36 0.58 0.67 3.22 18.67 17.11 23 I2_AR1 ActiveIntronRegion 1 13.15 0.19 5.98 2.67 5.19 5.33 4.22 6.97 14.32 2.31 82.74 29.70 32.72 81.75 23.05 40.30 57.58 0.00 0.50 0.24 3.70 11.16 17.69 24 I2_SR1 SilentIntronRegion 1 25.12 2.07 11.83 4.71 12.07 3.45 3.66 13.66 20.28 4.26 88.66 48.66 31.71 96.28 30.82 52.68 52.69 0.00 2.06 0.00 4.02 17.22 24.79 25 I2_AR2 ActiveIntronRegion 0 57.71 0.39 12.12 5.98 17.67 5.90 8.60 18.16 18.72 2.82 94.64 76.48 101.83 76.99 30.07 48.11 70.18 0.53 0.44 0.90 2.97 21.46 16.02 26 E3_Aa NovelBoundary 0 143.95 0.00 22.86 8.56 46.69 32.31 10.29 32.24 31.13 2.95 122.19 99.33 66.07 118.37 49.08 106.30 69.38 0.00 7.62 0.00 5.75 10.53 42.34 27 ER3a ExonRegion 0 87.04 0.90 14.60 7.63 26.32 10.68 9.65 25.42 24.60 4.63 254.69 90.22 99.01 162.11 96.10 108.19 150.07 0.00 1.45 1.04 5.77 46.63 29.20 28 E3_Da NovelBoundary 0 14.74 3.03 9.46 3.80 3.23 20.90 2.21 13.80 15.48 3.06 60.80 36.31 26.78 57.21 23.24 53.40 60.03 0.00 0.00 0.00 7.23 22.41 4.18 29 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E3_Db NovelBoundary 0 5.85 0.00 3.34 1.96 7.81 0.00 0.00 0.00 7.18 0.00 24.32 11.85 6.66 25.02 14.96 8.20 22.44 0.00 0.00 0.00 2.35 5.33 12.29 31 E3b_E4b KnownJunction 0 48.16 6.58 8.63 7.56 14.35 14.82 0.00 20.58 20.43 7.01 170.83 69.62 97.56 117.31 93.95 95.10 105.75 0.00 0.00 2.88 0.00 58.11 19.97 32 ER3b ExonRegion 0 33.86 4.07 7.35 5.45 16.82 14.15 1.32 19.01 18.00 7.05 163.47 74.22 102.51 117.63 84.97 94.68 100.44 0.00 0.00 2.13 4.41 51.49 16.36 33 I3 Intron 0 42.13 0.61 8.62 5.01 11.84 3.98 6.59 7.78 12.37 0.95 51.63 30.80 31.45 33.13 16.14 17.83 35.39 0.66 0.54 0.63 2.62 10.99 10.62 34 I3_AR1 ActiveIntronRegion 1 31.72 0.36 6.40 3.20 7.10 3.27 5.83 7.04 12.42 0.91 53.38 15.88 17.92 44.33 14.54 23.03 35.26 0.82 0.00 0.00 5.56 7.27 16.51 35 I3_SR1 SilentIntronRegion 1 46.59 0.44 10.54 5.88 13.12 5.07 7.61 9.37 13.46 1.09 53.77 39.74 41.20 30.92 16.61 16.23 38.66 0.58 0.64 0.98 1.36 13.86 9.87 36 I3_AR2 ActiveIntronRegion 1 39.82 1.88 3.42 4.13 14.40 0.00 3.06 1.41 7.03 0.32 38.26 14.80 8.99 23.48 16.88 16.13 19.89 0.80 1.05 0.10 3.41 3.91 3.45 37 E4_Aa NovelBoundary 0 94.68 6.71 14.67 8.89 24.53 2.84 6.14 24.52 4.31 1.18 65.28 26.86 25.32 41.56 28.80 18.88 16.74 0.00 0.00 0.00 3.15 8.21 7.43 38 ER4a ExonRegion 0 83.10 1.13 4.77 4.26 9.80 1.74 4.39 11.32 8.78 2.05 36.93 47.21 40.09 18.81 16.83 9.98 11.29 0.00 0.00 2.08 0.16 12.26 6.03 39 E4_Ab KnownBoundary 1 100.68 0.00 13.25 7.66 24.11 13.69 9.27 17.95 16.61 2.79 29.22 100.38 98.21 12.07 21.39 7.69 17.86 0.00 0.00 2.68 0.00 21.19 10.93 40 ER4b ExonRegion 0 160.70 3.08 45.23 16.46 40.55 16.53 16.38 48.48 73.46 11.01 422.53 281.38 235.94 227.54 158.39 142.95 200.95 0.00 1.05 5.42 4.84 108.74 37.21 41 E4_Ac KnownBoundary 0 176.70 0.00 67.89 31.40 31.75 4.83 20.27 50.27 86.83 15.96 487.28 321.70 195.60 270.53 154.27 196.96 215.99 0.00 4.52 0.00 6.30 151.12 44.64 42 ER4c ExonRegion 0 174.19 6.81 68.46 32.08 32.08 11.59 18.40 46.35 77.80 11.80 477.88 370.55 299.73 282.97 193.64 188.99 259.95 0.00 0.53 2.41 7.18 145.35 59.13 43 E4_Da KnownBoundary 1 29.78 2.70 51.39 8.36 0.00 4.88 3.67 22.30 43.06 3.65 204.84 234.23 66.72 78.29 103.22 47.94 59.65 0.00 0.00 0.00 0.00 42.56 22.28 44 E4a_E5a KnownJunction 1 111.65 6.45 16.29 26.34 39.30 0.00 10.33 14.33 20.43 2.74 142.25 213.22 193.17 180.24 57.36 113.90 121.36 0.00 0.00 2.94 2.78 84.44 36.02 45 ER4d ExonRegion 1 38.63 2.35 20.09 4.84 7.21 2.52 3.18 17.47 18.92 1.07 106.62 110.71 36.77 39.42 53.16 26.31 41.93 0.00 0.00 0.00 0.60 14.22 10.61 46 E4_Db NovelBoundary 0 92.83 0.00 15.52 5.09 0.00 0.00 1.99 6.98 8.10 0.00 91.81 74.42 26.30 42.15 43.64 44.09 43.38 0.00 0.00 0.00 2.84 17.45 14.26 47 I4_AR1 ActiveIntronRegion 0 14.25 0.00 4.49 0.00 1.64 0.00 1.63 3.17 2.26 0.00 15.44 27.18 2.37 12.15 12.06 5.48 12.13 0.00 0.00 0.00 0.00 1.28 10.83 48 ER5a ExonRegion 0 123.14 2.36 5.01 19.84 52.97 16.45 21.70 10.33 15.59 3.54 150.02 159.47 150.75 149.55 58.13 95.85 140.41 0.84 0.00 1.75 0.59 89.12 39.57 49 E5a_E6a KnownJunction 0 154.32 0.00 3.43 18.68 63.67 21.41 24.07 20.66 22.66 2.66 116.08 99.33 149.02 187.30 78.00 104.25 154.65 0.00 0.00 0.00 2.41 87.87 26.89 50 ER6a ExonRegion 0 114.41 3.77 4.33 15.09 33.28 11.58 10.87 16.69 18.41 5.30 145.01 106.06 113.67 145.35 58.27 82.46 127.33 0.85 0.85 0.66 5.26 78.93 37.96 51 E6_Da KnownBoundary 0 131.65 0.00 3.52 12.52 24.45 8.23 8.70 26.62 23.35 4.30 165.83 71.72 142.04 122.37 69.10 96.73 140.53 0.00 0.00 0.00 13.53 81.62 65.99 52 ER6b ExonRegion 1 151.42 0.97 2.85 13.94 56.08 17.75 22.04 20.62 31.39 8.83 242.98 85.55 175.68 154.46 90.33 124.95 157.58 0.00 0.23 1.13 7.00 109.73 66.38 53 E6_Db KnownBoundary 0 3.48 0.00 0.00 3.73 0.00 0.00 8.57 0.00 1.39 0.00 6.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 54 E6_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 2.45 0.00 55 E6c_E7a KnownJunction 0 144.47 0.00 1.83 15.68 38.96 22.32 29.32 21.03 32.46 7.15 257.07 95.28 112.82 137.91 71.82 89.81 178.03 0.00 4.05 0.00 0.00 56.03 63.60 56 ER6c ExonRegion 0 141.81 2.03 2.45 23.17 56.19 23.84 27.80 19.01 35.82 9.18 303.47 103.91 173.53 168.91 81.24 98.08 188.15 0.00 0.00 0.00 4.41 83.34 67.54 57 ER6d ExonRegion 0 13.77 0.87 0.00 1.42 2.29 0.00 4.71 0.00 0.95 0.00 3.00 1.86 13.64 4.05 4.66 3.50 8.29 0.00 0.00 0.00 0.94 1.44 0.02 58 I6 Intron 0 10.17 0.16 1.13 2.68 7.05 0.99 2.98 0.60 2.14 0.00 3.00 4.66 17.51 2.68 4.06 4.83 3.07 0.00 0.00 0.16 0.34 1.13 2.28 59 I6_SR1 SilentIntronRegion 0 10.71 0.17 1.24 2.89 7.30 0.73 3.09 0.66 2.35 0.00 2.92 5.12 19.16 2.76 3.96 5.20 3.37 0.00 0.00 0.18 0.38 1.14 2.16 60 ER7a ExonRegion 0 90.87 1.05 3.44 15.82 37.99 14.89 10.99 27.38 40.87 6.68 218.58 107.43 126.10 152.80 79.01 100.00 150.55 0.00 1.52 1.01 3.48 95.18 52.45 61 E7a_E8a KnownJunction 0 108.76 0.00 7.72 11.45 22.58 5.11 8.21 23.17 36.34 7.15 220.32 147.65 154.70 133.73 117.81 136.20 169.24 0.00 0.00 0.00 2.66 131.53 70.94 62 ER8a ExonRegion 0 89.75 1.50 7.76 17.17 16.89 8.33 6.46 17.85 29.10 3.50 179.03 84.75 104.53 134.18 79.79 106.39 147.85 0.00 1.06 1.92 4.70 81.87 53.68 63 E8a_E9a KnownJunction 0 99.80 2.76 7.42 7.26 22.33 18.06 8.97 11.05 11.31 2.71 122.56 54.77 27.76 113.43 62.55 52.21 112.01 0.00 0.00 2.94 3.15 36.86 20.74 64 ER9a ExonRegion 0 113.20 1.46 9.64 15.98 22.51 8.08 7.38 16.75 15.42 1.95 134.85 49.67 52.01 121.95 83.62 82.94 126.29 0.00 0.00 2.54 6.12 53.41 45.26 65 E9a_E10a KnownJunction 1 128.76 3.09 4.67 14.18 22.92 16.64 5.92 18.44 17.13 2.71 172.68 36.46 58.76 127.97 123.49 61.95 89.20 0.00 0.00 3.26 0.00 50.27 36.54 66 ER10a ExonRegion 0 125.75 2.97 10.59 17.47 43.26 13.82 12.39 18.03 23.51 6.60 120.31 97.06 69.08 90.97 113.45 52.01 75.18 0.00 1.01 1.11 2.29 73.84 28.00 67 ER10b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 IG41_AR1 ActiveIntergenicRegion 0 8.47 0.00 0.00 0.00 2.23 0.00 1.32 0.00 1.24 0.00 1.93 0.00 4.69 1.62 2.90 2.97 12.65 0.00 0.00 0.00 0.00 0.00 5.87