Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-298E9.4 Gene 0 6.79 5.71 3.83 3.68 5.36 6.09 7.61 9.24 7.10 3.85 9.67 14.03 7.49 8.59 5.78 10.21 4.85 7.49 7.05 9.06 6.94 12.81 6.84 2 441377 Transcript 0 8.05 4.43 5.38 4.64 7.74 6.68 5.04 3.75 4.22 1.99 3.60 12.03 13.45 8.39 4.64 10.38 2.24 4.67 3.90 9.03 5.72 6.91 8.63 3 452662 Transcript 0 0.90 1.08 0.22 0.55 0.97 0.23 1.23 0.85 0.18 0.16 1.12 2.39 0.92 1.15 0.98 1.84 1.36 2.03 0.29 0.89 2.04 1.18 0.97 4 430356 Transcript 0 6.58 6.04 3.18 3.66 5.89 6.20 8.18 10.19 7.71 4.25 10.02 15.63 7.73 8.23 5.59 9.74 5.42 7.29 7.93 8.61 6.27 13.54 6.61 5 ER1a ExonRegion 0 12.61 4.23 4.16 0.57 5.57 8.55 7.58 5.36 4.22 1.78 5.98 4.11 2.20 10.66 1.51 11.01 3.33 2.92 4.91 10.01 9.15 9.74 3.06 6 E1_Da NovelBoundary 1 23.78 8.75 12.74 10.79 11.97 22.60 12.32 11.71 11.20 16.06 2.21 31.06 0.00 9.83 17.06 33.15 8.98 19.44 8.38 5.94 25.51 38.33 24.93 7 E1a_E2a KnownJunction 0 3.70 0.00 1.77 2.06 0.00 0.00 0.00 0.00 1.79 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 Ix Intron 0 9.97 17.34 10.30 7.41 6.70 11.13 9.16 19.57 13.74 9.64 8.69 15.97 5.55 12.18 8.68 21.94 9.94 17.11 10.54 13.99 19.63 27.14 16.95 9 Ix_AR1 ActiveIntronRegion 0 16.56 21.62 9.20 6.66 9.27 9.77 8.46 20.23 13.37 12.48 8.19 26.76 4.11 13.15 8.00 28.06 9.60 16.87 10.07 12.67 16.55 31.66 16.60 10 Ix_SR1 SilentIntronRegion 0 16.02 32.35 14.03 14.12 9.04 17.54 12.72 26.96 17.09 14.19 12.07 19.50 10.30 11.04 8.90 22.42 9.80 19.39 15.43 14.92 13.34 39.06 19.61 11 Ix_AR2 ActiveIntronRegion 0 4.94 9.24 9.10 4.76 4.75 8.84 7.87 16.14 12.45 6.64 7.42 10.52 4.01 12.36 8.86 19.57 10.16 16.25 8.60 14.11 23.57 20.33 15.96 12 E2_Aa NovelBoundary 0 6.22 10.46 2.60 13.29 12.05 5.39 20.36 15.24 5.50 5.26 9.90 24.31 21.91 26.43 20.27 24.27 8.88 4.97 8.47 3.20 13.78 20.15 31.50 13 ER2a ExonRegion 1 7.84 9.06 10.19 11.27 17.64 11.50 7.55 5.89 6.65 4.20 4.83 25.98 38.16 14.51 12.40 20.13 3.38 11.09 6.81 17.07 8.01 10.99 22.83 14 E2_Ab KnownBoundary 0 13.41 15.00 15.97 15.92 36.59 28.79 17.27 12.40 6.80 10.61 14.69 49.22 38.80 17.48 18.42 31.19 3.83 18.32 17.41 35.35 13.65 22.35 40.12 15 ER2b ExonRegion 0 8.65 9.99 14.63 16.23 13.30 17.37 9.03 7.83 14.68 8.84 16.43 34.76 18.62 13.57 12.97 29.02 5.34 16.36 14.62 24.28 8.17 19.73 14.51 16 E2_Ac KnownBoundary 0 6.82 12.43 12.03 9.29 0.00 15.16 6.49 7.23 19.99 4.70 19.48 24.91 0.00 11.65 8.90 37.85 8.51 15.50 8.85 12.21 5.81 30.68 0.00 17 ER2c ExonRegion 0 2.06 2.56 5.69 6.29 1.10 3.15 4.89 8.38 12.13 6.21 7.04 8.33 0.48 6.12 7.22 17.83 4.74 7.06 6.94 6.60 1.19 3.90 0.15 18 E2_Da NovelBoundary 1 3.70 3.35 6.39 9.52 11.63 5.05 23.41 17.79 21.90 7.12 12.16 61.82 6.82 21.90 9.77 11.62 14.03 20.27 3.86 38.99 8.83 21.13 31.33 19 E2a_E3a KnownJunction 0 3.11 0.00 0.00 0.00 3.82 0.00 4.15 17.09 4.80 2.93 2.53 13.65 0.00 0.00 0.00 0.00 0.00 2.28 4.71 2.75 0.00 0.00 0.00 20 Ix Intron 0 6.48 11.06 15.83 12.77 11.83 9.98 11.25 19.70 16.27 8.43 15.12 13.12 13.88 19.60 11.29 23.24 13.47 15.30 14.08 19.54 20.22 32.23 20.97 21 Ix_AR1 ActiveIntronRegion 0 6.52 11.14 15.94 12.85 11.91 10.04 11.33 19.84 16.38 8.48 15.21 13.21 13.98 19.71 11.36 23.40 13.56 15.40 14.17 19.67 20.35 32.45 21.10 22 Ix Intron 0 21.59 6.48 4.66 1.29 25.59 18.75 11.82 0.00 1.17 1.09 12.32 40.59 12.84 21.32 12.73 11.37 4.21 0.00 14.21 10.85 9.83 19.92 26.21 23 Ix_SR1 SilentIntronRegion 0 22.35 6.68 4.76 1.33 26.48 19.29 12.16 0.00 1.22 1.12 12.63 42.11 13.22 22.15 13.19 11.73 4.37 0.00 14.77 11.16 10.16 20.62 27.00 24 E3_Aa NovelBoundary 0 38.08 9.34 24.69 19.44 7.98 31.35 27.29 27.93 22.77 26.30 24.32 12.30 13.15 36.38 15.20 38.45 0.00 23.92 4.61 15.02 30.70 56.58 59.16 25 ER3a ExonRegion 0 15.51 6.89 7.89 3.93 6.92 14.39 8.14 16.51 10.85 5.10 13.37 9.62 6.16 17.95 8.33 20.92 0.23 17.97 8.05 23.19 14.57 29.06 13.67 26 E3_Da NovelBoundary 0 7.11 18.94 12.83 4.36 24.11 26.46 9.80 22.18 21.85 12.25 11.16 0.00 13.64 44.62 5.32 27.26 8.32 17.53 37.08 10.99 25.45 46.84 30.56 27 E3a_E4a KnownJunction 0 0.00 13.22 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 2.53 0.00 6.01 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 28 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 Ix Intron 0 6.98 5.36 2.41 3.13 8.23 11.29 8.73 3.96 6.88 3.38 8.07 7.78 5.94 15.00 8.70 18.95 5.08 11.31 11.22 10.76 18.41 25.19 20.01 30 Ix_AR1 ActiveIntronRegion 0 8.61 6.62 2.97 3.86 10.16 13.93 10.77 4.89 8.49 4.17 9.96 9.60 7.33 17.82 10.74 23.38 6.27 13.96 13.84 13.25 22.72 31.06 24.68 31 E4_Aa NovelBoundary 0 0.00 8.81 4.44 3.36 3.65 0.00 6.01 5.83 9.43 3.57 9.53 12.30 8.28 2.12 5.19 15.72 4.02 2.20 9.60 3.26 3.15 5.57 11.10 32 ER4a ExonRegion 0 6.70 6.15 6.71 3.90 1.90 3.70 8.45 8.65 6.75 3.50 14.35 14.09 8.49 10.24 8.75 8.85 6.07 6.96 6.39 8.68 10.11 11.55 8.45 33 E4_Da KnownBoundary 0 10.37 2.96 16.71 9.29 11.63 2.90 19.78 18.03 7.44 10.74 7.05 0.00 7.14 9.54 10.75 11.62 12.44 9.33 4.80 10.93 8.22 26.02 17.33 34 ER4b ExonRegion 0 6.58 6.04 3.18 3.66 5.89 6.20 8.18 10.19 7.71 4.25 10.02 15.63 7.73 8.23 5.59 9.74 5.42 7.29 7.93 8.61 6.27 13.54 6.61 35 E4_Db NovelBoundary 0 0.00 11.38 0.00 1.83 7.47 0.00 6.45 3.57 13.02 0.00 2.47 6.30 12.82 0.00 0.00 4.36 4.39 0.00 14.40 14.83 2.78 4.90 0.00 36 Ix Intron 0 22.47 19.71 2.95 13.59 27.17 31.74 17.72 19.62 24.20 7.88 11.60 55.19 17.51 40.84 15.36 32.92 11.43 12.73 16.91 20.62 13.22 44.72 16.26 37 Ix_AR1 ActiveIntronRegion 0 22.67 19.89 2.98 13.72 27.42 32.02 17.88 19.79 24.41 7.95 11.70 55.69 17.67 41.20 15.49 33.22 11.50 12.84 17.06 20.80 13.33 45.12 16.41 38 Ix_SR3 SilentIntronRegion 0 1.07 5.51 3.94 4.55 8.60 0.30 5.66 2.45 2.67 4.38 3.50 44.94 12.29 7.09 2.42 7.30 0.00 2.06 1.53 6.89 1.67 10.00 5.98 39 E5_Aa NovelBoundary 0 3.48 6.51 1.69 1.76 0.00 0.00 14.44 2.55 3.59 6.88 0.00 12.45 0.00 0.00 10.63 16.32 0.00 10.49 4.52 6.52 8.03 7.59 4.35 40 ER5a ExonRegion 0 1.58 1.37 0.00 2.20 0.04 0.03 2.38 0.94 0.71 0.59 0.74 2.76 0.00 2.53 1.79 3.18 2.32 3.32 1.15 1.51 3.94 0.75 1.06 41 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E6_Aa NovelBoundary 0 10.89 6.31 3.67 3.20 4.24 0.00 1.99 6.74 3.56 1.13 2.68 13.80 6.49 2.47 4.45 0.00 0.00 2.24 4.80 0.00 3.15 8.51 11.27 43 ER6a ExonRegion 0 2.02 2.95 0.87 0.00 3.83 0.87 2.55 2.46 0.00 0.03 3.72 6.80 3.68 2.05 2.11 4.19 3.12 4.82 0.00 2.07 4.20 3.97 2.80