Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ASB13 Gene 0 44.50 51.68 62.89 39.92 23.81 65.35 21.01 17.19 43.89 39.76 11.87 6.09 9.89 1.48 15.77 9.78 12.14 68.28 103.08 66.93 33.46 32.86 42.19 2 466389 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 479033 Transcript 0 0.00 0.00 1.27 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 6.46 0.00 3.12 3.76 4 360229 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 459912 Transcript 0 1.89 7.41 5.33 1.49 1.12 4.93 4.03 0.00 1.75 2.40 1.09 0.00 0.00 0.26 0.00 0.00 0.00 16.40 15.11 14.68 2.19 3.29 2.42 6 357700 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 482921 Transcript 0 1.07 0.76 1.73 0.83 0.61 0.51 0.25 0.03 0.57 1.64 0.00 0.00 0.02 0.00 0.07 0.04 0.02 2.39 4.13 1.23 2.77 1.08 3.73 8 485783 Transcript 0 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 9 493897 Transcript 0 0.00 0.00 0.00 2.40 0.00 0.00 0.66 1.27 0.62 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 1.06 0.11 0.00 0.00 1.78 6.42 1.40 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.92 3.19 3.43 1.96 0.58 3.43 13 ER2b ExonRegion 0 10.98 11.91 2.43 3.36 3.49 20.65 6.16 3.91 5.17 5.85 3.75 0.00 0.00 0.00 7.99 10.81 0.00 31.12 27.56 19.06 9.01 10.27 16.98 14 E2a_E3a KnownJunction 0 9.48 6.18 9.43 12.85 0.00 15.05 1.85 6.65 16.78 10.23 0.00 0.00 0.00 0.00 0.00 7.18 0.00 61.85 11.48 17.26 0.00 0.00 22.71 15 ER3a ExonRegion 0 1.98 7.06 22.11 10.28 1.45 7.31 1.34 6.61 15.04 14.54 4.75 0.00 6.86 0.36 6.79 4.14 4.41 43.30 30.85 36.27 15.78 11.45 9.89 16 E3a_E4b KnownJunction 0 6.08 8.49 25.93 12.82 0.00 9.88 3.97 7.06 25.98 21.09 0.00 0.00 0.00 0.00 13.35 8.12 4.77 83.28 62.59 34.64 19.27 3.12 14.94 17 E3a_E5a KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 6.46 0.00 3.12 3.76 18 ER4a ExonRegion 0 1.07 0.76 1.73 0.83 0.61 0.51 0.25 0.03 0.57 1.64 0.00 0.00 0.02 0.00 0.07 0.04 0.02 2.39 4.13 1.23 2.77 1.08 3.73 19 E4_Ab KnownBoundary 0 0.00 3.35 1.77 1.93 0.00 0.00 2.03 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 6.18 0.00 0.00 20 ER4b ExonRegion 0 10.41 14.11 42.54 24.82 8.67 36.74 9.52 9.14 42.96 32.19 10.67 3.78 6.60 0.45 11.78 8.96 11.60 81.14 63.11 73.60 31.78 21.67 31.29 21 E4a_E5a KnownJunction 0 3.26 67.29 67.68 43.32 4.24 44.12 12.67 14.17 60.65 41.53 9.95 26.26 0.00 0.00 26.70 7.60 16.36 101.73 97.41 107.06 36.76 22.53 33.63 22 ER5a ExonRegion 0 19.94 34.32 72.08 35.94 11.90 58.64 12.44 12.77 64.77 45.45 15.93 3.86 10.89 1.81 20.19 10.14 17.65 113.57 95.35 104.68 35.84 32.32 41.48 23 E5b_E7a KnownJunction 0 0.00 0.00 5.50 1.43 0.00 10.56 5.56 0.00 0.00 1.13 2.42 0.00 0.00 0.00 0.00 0.00 0.00 4.60 11.77 15.15 0.00 2.51 4.35 24 E5b_E8a KnownJunction 0 10.15 23.48 80.90 60.53 19.35 74.79 23.19 14.09 59.00 32.58 9.69 6.30 5.84 2.47 29.92 10.42 20.66 104.84 179.77 90.12 36.82 71.89 64.19 25 ER5b ExonRegion 0 11.64 27.28 78.02 51.11 17.84 80.23 19.20 13.40 59.59 28.48 13.05 8.66 0.00 1.35 25.63 14.86 15.40 98.55 178.11 105.32 38.56 55.39 69.99 26 ER5c ExonRegion 0 8.47 21.35 71.07 50.43 18.73 77.94 19.20 12.10 58.67 32.11 10.63 8.66 0.00 3.25 23.21 17.83 19.81 98.85 175.19 96.81 37.46 62.51 63.14 27 ER6a ExonRegion 0 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.03 0.03 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 28 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER7a ExonRegion 0 2.85 12.55 3.69 0.96 3.37 1.95 4.28 0.00 2.23 4.49 0.86 0.00 0.00 0.78 0.00 0.00 0.00 19.80 9.20 19.31 3.43 4.66 2.90 30 E7_Da NovelBoundary 0 7.11 24.21 1.15 1.80 3.65 2.44 0.00 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 3.03 2.45 3.76 31 E7a_E8a KnownJunction 0 2.82 9.67 6.80 2.06 0.00 2.27 2.25 0.00 3.01 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.79 24.38 9.59 3.15 2.69 0.00 32 ER8a ExonRegion 0 15.97 29.13 90.82 46.44 12.67 64.40 13.12 11.32 56.43 41.69 12.09 9.50 12.88 2.46 15.20 16.94 16.22 117.54 156.80 100.58 46.12 45.46 46.73 33 E8_Ab KnownBoundary 0 10.74 2.70 34.21 10.75 0.00 9.09 10.29 5.46 35.10 27.69 2.42 0.00 6.66 0.00 5.69 0.00 8.42 25.58 63.53 37.20 23.85 26.21 18.10 34 E8_Da KnownBoundary 0 7.19 11.77 41.39 31.20 7.64 24.02 1.81 11.01 36.46 14.80 0.00 0.00 6.49 2.35 9.52 0.00 4.11 74.04 108.43 22.50 11.18 20.64 15.19 35 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER8b ExonRegion 0 19.05 19.32 68.62 39.52 8.03 48.60 10.59 15.56 63.61 42.44 5.80 4.33 9.38 3.25 31.91 8.92 13.20 104.40 230.94 74.47 55.09 50.00 44.05 37 ER8c ExonRegion 0 27.46 36.10 69.94 43.61 13.78 56.71 14.66 17.03 60.43 39.02 8.07 5.52 7.04 2.64 23.28 8.92 14.94 113.17 187.22 80.32 46.99 55.94 47.06 38 E8b_E9a KnownJunction 0 41.27 45.98 80.84 46.68 22.58 65.93 23.85 23.33 55.93 47.14 21.22 6.30 6.66 0.00 23.12 15.89 21.88 129.71 123.20 100.09 34.41 50.76 62.49 39 ER9a ExonRegion 0 36.53 58.61 69.13 41.97 31.53 90.10 26.41 23.58 67.54 56.27 21.48 9.27 9.14 2.01 12.94 22.21 16.65 113.62 159.34 79.56 54.73 39.99 56.64 40 E9_Da KnownBoundary 0 67.57 75.71 84.44 38.49 42.28 130.95 29.28 26.82 73.70 49.35 25.01 6.30 6.01 5.06 5.19 32.30 13.37 123.32 286.60 77.40 76.97 51.31 75.03 41 E9a_E9b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 2.55 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 42 ER9b ExonRegion 0 24.04 36.39 58.58 46.46 18.20 83.57 15.89 25.40 58.76 54.13 14.05 10.75 16.16 3.05 12.02 25.16 21.46 132.71 219.34 73.78 57.81 42.53 60.94 43 E9_Db KnownBoundary 0 17.48 43.61 56.65 53.24 11.97 102.50 11.22 20.41 59.81 74.19 20.32 6.30 20.13 4.77 21.88 24.95 22.53 133.94 262.60 87.25 39.54 20.76 62.91 44 ER9c ExonRegion 0 72.14 82.44 85.21 59.97 38.17 103.96 34.79 25.26 59.36 58.83 16.59 10.78 15.01 2.52 21.24 11.90 16.76 86.60 137.38 88.50 43.16 45.62 60.34 45 E9_Ab KnownBoundary 0 183.59 91.83 116.38 65.66 60.02 130.61 37.41 22.06 50.98 48.06 6.21 0.00 6.66 0.00 21.01 3.76 12.16 79.05 61.74 91.66 43.00 31.72 42.85 46 ER9d ExonRegion 0 66.95 65.75 80.44 43.56 30.24 57.64 21.78 21.28 42.72 35.81 11.36 1.81 8.08 0.27 21.53 8.31 11.29 42.25 106.55 61.43 34.62 35.15 43.55 47 ER9e ExonRegion 0 0.00 0.00 0.00 2.73 0.00 0.00 1.32 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00