Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AKR1C1 Gene 0 19.13 29.08 21.80 24.40 28.75 108.59 7.37 40.12 48.72 18.12 0.02 3.80 0.17 0.07 0.13 0.03 0.12 19.15 1.18 18.86 54.02 80.16 45.72 2 439082 Transcript 0 2.74 3.14 1.79 6.80 5.48 14.63 1.78 4.08 4.12 2.09 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.34 1.49 2.03 0.00 1.22 0.26 3 434459 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 477661 Transcript 0 3.37 6.04 1.96 8.37 4.82 16.93 1.36 8.63 10.25 3.40 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.56 0.00 4.02 8.36 27.79 7.54 5 380872 Transcript 0 4.22 5.90 4.04 5.63 5.93 29.27 1.24 9.29 9.83 3.51 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.47 0.41 2.31 3.37 30.98 10.96 6 442997 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 7 380859 Transcript 0 0.87 3.03 2.82 8.19 11.80 14.48 1.38 2.57 10.16 1.25 0.00 0.17 0.00 0.00 0.00 0.00 0.40 1.79 0.77 2.72 2.12 8.71 2.98 8 476100 Transcript 0 12.73 17.07 9.88 38.71 31.26 50.38 7.02 5.67 29.59 12.98 0.23 2.76 2.32 0.92 1.72 0.00 1.19 15.27 5.83 11.65 8.65 32.91 17.99 9 ER1a ExonRegion 0 1.51 1.05 2.30 2.99 1.71 5.01 1.71 2.64 2.93 1.77 0.00 0.80 0.00 0.00 0.00 0.00 0.00 3.51 0.00 4.52 1.16 1.10 1.54 10 E1_Da KnownBoundary 0 3.11 0.00 3.37 5.66 3.57 5.11 0.00 0.00 1.79 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 2.94 0.00 0.00 0.00 11 E1a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 3.75 2.20 3.14 2.78 2.23 5.46 0.83 2.88 5.84 0.17 0.00 5.95 0.00 0.00 0.00 0.00 0.00 2.69 0.00 2.22 0.00 0.00 0.00 13 E1_Db NovelBoundary 0 10.00 6.05 0.00 3.96 3.99 0.00 1.77 0.00 4.69 1.37 0.00 0.00 0.00 3.00 0.00 0.00 0.00 10.40 14.12 11.89 5.31 2.45 4.35 14 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 I1 Intron 0 1.52 1.28 4.10 19.51 12.02 19.26 4.87 0.00 10.91 8.75 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.50 2.87 6.30 0.20 2.99 0.53 16 I1_SR1 SilentIntronRegion 0 1.67 1.40 4.45 21.26 12.92 21.16 5.31 0.00 11.69 9.58 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.55 3.15 6.93 0.22 3.29 0.58 17 E2_Aa NovelBoundary 0 14.82 19.27 4.14 27.90 37.10 100.11 6.18 37.79 13.95 7.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 17.32 15.08 3.15 3.12 12.29 18 ER2a ExonRegion 0 4.47 7.23 2.23 17.63 14.21 38.43 4.50 9.37 6.50 6.12 0.00 4.04 0.00 0.00 0.00 0.00 0.00 4.31 4.46 3.88 0.00 3.66 0.78 19 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2b ExonRegion 0 4.88 6.88 3.68 28.73 27.17 70.25 6.31 15.56 11.78 12.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.40 6.13 8.51 0.00 5.93 2.94 22 ER2c ExonRegion 0 49.70 93.91 15.51 30.68 102.67 295.31 28.56 34.94 42.53 22.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.81 1.60 48.63 71.57 87.69 84.42 23 E2_Ad KnownBoundary 0 1123.90 934.97 118.09 183.16 930.56 3385.15 200.45 411.07 448.32 162.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 291.00 12.33 405.49 1404.01 1274.15 1449.04 24 ER2d ExonRegion 0 247.39 230.46 64.31 77.18 283.49 1105.62 52.84 196.72 231.50 71.78 0.00 5.64 0.00 0.00 0.00 0.00 0.00 143.77 0.97 116.16 374.38 524.33 433.43 25 E2a_E4b KnownJunction 0 15.11 15.66 35.98 16.02 32.77 73.65 2.25 73.03 62.04 38.06 0.00 7.50 0.00 0.00 0.00 0.00 0.00 9.16 0.00 21.41 33.05 24.00 46.78 26 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 27 I2 Intron 0 2.08 0.80 1.43 10.76 11.02 15.47 0.52 0.00 6.86 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.59 0.62 1.67 3.03 11.85 10.94 28 I2_AR1 ActiveIntronRegion 0 2.09 0.80 1.44 10.83 11.11 15.58 0.52 0.00 6.91 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 0.63 1.68 3.06 11.94 11.03 29 E3_Aa NovelBoundary 0 10.45 27.23 10.23 37.99 15.79 65.13 12.32 12.28 43.55 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 12.52 14.96 8.83 32.88 30.39 30 ER3a ExonRegion 0 3.08 5.81 2.49 14.51 17.89 36.03 4.50 3.42 22.41 0.35 0.00 0.00 0.00 0.00 0.00 0.00 1.60 7.14 3.09 7.23 4.28 19.78 8.56 31 E3_Da NovelBoundary 0 6.67 12.10 1.83 18.01 19.27 58.21 12.10 6.04 32.84 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.31 4.05 20.45 20.70 25.04 16.73 32 E3a_E4b KnownJunction 0 0.00 2.43 8.10 17.08 24.70 14.20 0.00 1.97 13.69 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 33 I3 Intron 0 2.44 6.58 6.31 28.18 18.20 30.57 4.36 4.66 31.09 10.59 0.00 0.59 0.00 0.00 0.22 0.00 0.00 3.03 2.27 14.82 3.99 31.76 7.41 34 I3_SR1 SilentIntronRegion 0 2.24 5.73 4.66 27.13 20.16 29.33 4.26 5.60 32.44 9.76 0.00 0.75 0.00 0.00 0.00 0.00 0.00 2.48 2.17 14.43 3.91 27.76 6.46 35 I3_AR2 ActiveIntronRegion 0 7.29 7.23 7.42 37.78 11.30 28.22 3.60 8.74 38.29 16.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.73 3.19 14.30 9.92 43.06 2.94 36 I3_AR3 ActiveIntronRegion 0 2.09 8.18 12.39 38.44 11.60 37.11 4.79 5.98 43.23 16.48 0.00 0.00 0.00 0.00 1.17 0.00 0.00 6.81 1.15 16.54 7.16 55.27 8.68 37 I3_AR4 ActiveIntronRegion 0 0.00 2.61 8.93 42.83 21.41 55.28 4.35 3.70 48.88 16.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 17.02 4.41 47.62 13.42 38 I3_AR5 ActiveIntronRegion 0 3.58 9.12 9.48 34.81 22.19 39.23 6.06 2.75 33.34 12.97 0.00 0.75 0.00 0.00 0.43 0.00 0.00 3.45 3.37 18.58 3.37 40.27 10.14 39 E4_Aa NovelBoundary 0 27.71 8.95 10.91 39.86 24.87 51.11 12.10 16.27 36.26 3.09 2.53 0.00 0.00 0.00 0.00 3.25 0.00 11.19 4.80 15.08 11.92 23.57 16.82 40 ER4a ExonRegion 0 12.73 17.07 9.88 38.71 31.26 50.38 7.02 5.67 29.59 12.98 0.23 2.76 2.32 0.92 1.72 0.00 1.19 15.27 5.83 11.65 8.65 32.91 17.99 41 E4_Ab KnownBoundary 0 19.78 15.33 10.11 48.48 38.03 33.90 6.76 6.04 43.52 16.60 0.00 6.30 0.00 0.00 0.00 0.00 0.00 11.19 3.86 5.88 11.86 25.84 10.76 42 ER4b ExonRegion 0 32.92 39.65 86.08 99.21 63.80 129.32 8.21 191.01 221.16 91.60 0.00 8.39 0.00 0.00 0.00 0.00 0.00 66.67 5.87 144.79 488.47 412.95 198.22 43 E4_Ac KnownBoundary 0 74.53 76.17 158.84 162.85 79.71 199.83 22.57 399.98 478.96 144.33 0.00 48.77 0.00 0.00 0.00 4.10 0.00 253.65 23.15 287.63 447.52 1673.33 1269.86 44 ER4c ExonRegion 0 21.19 39.41 85.72 103.50 184.29 451.76 29.00 198.26 231.38 70.95 0.00 2.99 0.00 0.00 0.00 0.00 0.00 131.45 1.44 89.84 236.57 451.01 426.68 45 E4a_E5a KnownJunction 0 38.75 100.51 100.14 121.43 562.05 1383.18 89.56 187.95 209.20 67.34 0.00 13.80 0.00 0.00 0.00 0.00 0.00 94.56 3.95 84.95 332.61 397.28 243.54 46 I4 Intron 0 1.15 2.45 1.32 7.48 4.20 9.96 1.92 2.02 8.12 2.68 0.00 0.86 0.20 0.00 0.00 0.00 0.00 0.61 0.38 4.11 2.13 17.73 8.51 47 I4_SR1 SilentIntronRegion 0 1.15 2.46 1.33 7.50 4.21 10.00 1.92 2.02 8.15 2.69 0.00 0.86 0.20 0.00 0.00 0.00 0.00 0.61 0.39 4.12 2.13 17.79 8.54 48 ER5a ExonRegion 0 60.93 246.32 130.08 117.23 233.06 1127.75 69.85 179.73 224.17 93.52 0.00 19.98 0.00 0.00 0.00 0.00 0.00 93.32 3.73 84.07 284.67 339.81 174.17 49 E5_Da KnownBoundary 0 3.04 5.85 0.00 0.00 3.48 12.10 1.63 0.00 1.79 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.90 20.94 0.00 50 E5a_E5b KnownJunction 0 61.94 190.36 111.50 91.36 53.99 218.85 13.03 142.69 185.41 54.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.38 0.00 37.46 192.50 179.23 28.77 51 E5_Db KnownBoundary 0 7.41 18.81 1.30 4.99 0.00 8.69 0.00 5.83 11.75 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 5.75 15.80 3.93 52 ER5b ExonRegion 0 2.12 14.24 0.00 3.27 3.75 16.14 1.32 3.46 3.21 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 6.61 29.17 2.94 53 ER5c ExonRegion 0 3.37 6.04 1.96 8.37 4.82 16.93 1.36 8.63 10.25 3.40 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.56 0.00 4.02 8.36 27.79 7.54 54 E5_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER5d ExonRegion 0 149.64 197.44 132.13 113.77 61.16 345.97 16.95 198.59 234.56 104.71 0.00 7.93 0.00 0.00 0.00 0.00 0.00 78.16 2.44 68.80 312.73 310.20 128.11 56 E5c_E6a KnownJunction 0 136.54 169.58 147.30 134.75 101.27 592.50 34.93 196.79 232.72 106.75 0.00 19.36 0.00 0.00 0.00 0.00 0.00 117.44 3.67 99.97 266.20 408.24 247.04 57 I5 Intron 0 1.67 4.00 1.08 6.80 2.11 29.61 1.82 8.62 9.79 2.36 0.00 2.81 0.00 0.00 0.00 0.00 0.00 4.53 0.00 1.68 7.37 31.18 5.78 58 I5_AR1 ActiveIntronRegion 0 1.85 4.45 1.20 7.55 2.34 32.91 2.03 9.58 10.88 2.62 0.00 3.12 0.00 0.00 0.00 0.00 0.00 5.04 0.00 1.86 8.19 34.66 6.43 59 E6_Aa NovelBoundary 0 10.37 5.79 0.00 3.80 8.32 47.47 3.97 9.65 8.07 6.07 0.00 12.45 0.00 0.00 0.00 0.00 0.00 4.06 0.00 3.13 11.80 20.57 0.00 60 ER6a ExonRegion 0 131.52 94.69 153.40 114.25 66.48 321.91 23.65 206.29 253.57 87.22 0.00 33.40 0.00 0.00 0.00 1.23 0.00 120.60 3.76 88.41 299.11 307.62 216.83 61 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER7a ExonRegion 0 0.40 3.88 0.70 1.16 4.60 7.71 1.01 4.89 4.56 1.71 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.63 4.21 11.92 3.37 64 E7_Da NovelBoundary 0 3.78 8.75 1.09 16.51 28.61 25.16 9.67 9.36 18.34 16.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 8.50 0.00 28.60 3.41 65 ER8a ExonRegion 0 44.62 58.59 120.91 88.72 52.15 273.25 20.89 192.91 245.42 78.66 0.00 21.06 0.00 0.00 0.00 0.00 0.00 110.39 3.16 67.89 256.97 326.03 178.23 66 E8_Da NovelBoundary 0 3.48 0.00 3.61 4.63 8.23 16.30 0.00 0.00 6.05 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.59 17.08 23.22 67 E8a_E9a KnownJunction 0 69.49 81.56 112.27 77.11 105.26 390.29 20.09 233.01 271.03 57.00 0.00 30.61 0.00 0.00 0.00 0.00 0.00 105.46 0.00 72.67 258.85 279.78 258.91 68 ER9a ExonRegion 0 42.41 98.28 78.58 61.10 47.01 262.84 19.11 150.25 175.20 62.15 0.00 11.96 0.00 0.00 0.00 0.00 0.00 76.79 1.77 43.55 165.43 174.30 122.05 69 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER9b ExonRegion 0 10.58 62.02 54.53 47.70 21.41 191.63 14.56 91.61 90.16 40.14 0.00 4.33 0.00 0.00 0.00 0.00 0.00 29.56 3.19 8.51 22.04 159.39 70.48 71 I9_SR1 SilentIntronRegion 0 0.00 0.92 1.23 1.36 0.00 0.00 0.00 5.96 14.94 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.21 2.20 5.00 0.29 72 I9_AR2 ActiveIntronRegion 0 0.38 2.56 3.70 0.86 2.40 8.89 1.19 8.33 24.29 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 5.33 3.20 3.66 1.58 73 ER10a ExonRegion 0 53.60 60.86 52.82 43.09 40.17 154.28 14.29 109.54 118.11 44.98 0.00 8.40 0.00 0.00 0.00 0.00 0.00 35.73 0.08 26.81 109.39 119.59 75.29 74 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 ER11a ExonRegion 0 15.84 36.21 39.16 28.33 34.30 118.71 6.74 80.45 78.15 32.09 0.00 4.85 0.00 0.00 0.00 0.00 0.00 16.80 0.00 31.25 66.23 116.46 55.38 76 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 E11_Db KnownBoundary 0 0.00 0.00 3.43 3.70 0.00 20.95 2.03 2.55 9.78 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 11.70 7.43 78 ER11b ExonRegion 0 17.07 30.10 11.27 13.63 35.68 91.81 9.62 16.48 25.44 9.86 0.00 2.02 0.00 0.00 0.00 0.00 0.00 6.04 0.00 5.82 16.01 41.25 52.47 79 ER11c ExonRegion 0 4.22 5.90 4.04 5.63 5.93 29.27 1.24 9.29 9.83 3.51 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.47 0.41 2.31 3.37 30.98 10.96