Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATP5C1 Gene 0 439.28 1058.55 552.35 283.50 393.24 363.78 346.43 357.73 233.55 370.14 808.78 591.70 332.02 645.18 745.59 496.11 617.18 259.74 415.33 413.13 229.08 343.69 215.39 2 356708 Transcript 0 3.45 5.46 1.16 0.00 4.08 2.80 1.46 0.00 0.46 1.33 6.92 0.00 0.00 11.71 4.58 9.39 7.82 1.17 2.18 0.22 3.02 0.77 2.78 3 493053 Transcript 0 23.49 139.05 47.34 36.93 44.31 59.40 47.12 28.14 12.53 38.98 26.80 6.15 13.31 14.54 20.77 33.41 12.90 37.39 55.15 34.90 19.95 2.45 7.77 4 462760 Transcript 0 1.66 4.21 1.90 4.43 8.19 7.98 8.92 4.41 4.21 5.06 2.88 12.04 9.82 2.69 6.18 1.37 1.55 1.41 1.79 5.48 0.52 5.15 1.73 5 460362 Transcript 0 7.62 7.69 5.47 4.29 3.53 3.22 4.78 5.66 6.15 4.80 2.89 3.34 4.42 3.65 7.06 7.04 5.50 10.26 5.02 5.61 3.09 1.99 7.21 6 335698 Transcript 0 111.87 57.49 127.14 26.90 24.11 18.63 14.53 56.19 29.51 22.67 11.95 0.00 0.00 2.47 14.22 0.00 0.00 1.66 9.60 26.21 337.30 435.25 103.46 7 397106 Transcript 0 0.79 4.07 3.98 2.04 0.33 2.06 1.16 2.81 1.85 2.29 11.60 11.36 5.86 7.31 14.14 3.34 5.36 2.08 1.59 1.86 0.28 0.52 0.00 8 465936 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 460820 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 472202 Transcript 1 29.06 21.64 22.50 20.18 47.48 29.61 39.37 30.53 19.70 30.35 38.67 78.87 47.43 37.99 23.04 29.83 29.64 9.76 10.16 18.32 7.62 49.47 15.02 11 473809 Transcript 1 7.00 10.20 0.61 1.97 7.92 1.06 5.51 2.48 2.31 1.26 2.38 16.08 9.60 8.81 8.90 7.36 6.70 1.32 2.17 4.98 0.00 11.21 4.24 12 480528 Transcript 0 34.54 85.05 70.42 36.65 46.83 30.19 32.34 48.21 27.97 42.56 90.09 58.60 32.83 80.51 104.65 78.97 61.66 42.50 59.61 58.81 18.02 61.39 34.19 13 ER1a ExonRegion 0 3.45 5.46 1.16 0.00 4.08 2.80 1.46 0.00 0.46 1.33 6.92 0.00 0.00 11.71 4.58 9.39 7.82 1.17 2.18 0.22 3.02 0.77 2.78 14 E1_Ad KnownBoundary 0 9.85 11.31 3.61 2.00 11.54 7.84 2.08 0.00 0.00 0.00 14.37 0.00 0.00 9.42 0.00 18.71 11.22 4.15 3.95 0.00 5.19 2.94 3.16 15 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1b ExonRegion 0 25.05 28.81 1.63 0.68 18.51 21.55 17.76 0.58 4.32 3.44 20.30 0.00 0.00 33.84 15.23 32.20 17.88 6.47 11.15 4.08 7.35 2.08 4.65 18 E1_Ag KnownBoundary 0 87.79 68.87 4.67 2.03 46.26 55.93 53.00 4.56 3.59 4.73 48.06 0.00 0.00 119.84 108.78 35.55 45.35 32.79 17.51 23.97 28.17 13.72 19.21 19 ER1c ExonRegion 0 64.42 66.60 8.58 5.45 39.80 55.01 43.53 5.62 7.02 5.30 41.80 0.00 0.00 74.00 48.23 59.26 34.87 23.67 22.30 20.74 24.93 8.99 12.48 20 ER1d ExonRegion 0 150.27 179.97 30.02 10.90 101.68 138.45 90.03 24.20 18.53 12.62 102.44 0.00 0.00 155.92 143.61 142.66 103.98 51.74 63.71 61.70 57.30 58.34 48.45 21 ER1e ExonRegion 0 164.03 205.39 33.70 11.58 120.41 167.79 104.59 25.93 19.76 15.48 119.84 0.00 0.00 168.91 158.12 160.49 120.48 53.58 68.49 64.89 61.70 64.59 57.26 22 E1_Ah KnownBoundary 1 2019.62 3642.31 496.79 235.53 1196.86 1891.24 1493.10 342.80 206.05 313.43 1437.89 18.46 6.49 1132.92 1482.42 1523.10 1353.90 780.65 1295.10 671.19 598.19 812.81 725.67 23 ER1f ExonRegion 1 238.74 330.25 51.71 22.90 168.04 272.14 180.59 36.99 24.95 28.44 171.64 0.00 0.00 248.82 242.54 222.91 188.81 70.95 87.92 96.17 98.29 97.09 81.05 24 ER1g ExonRegion 1 904.24 1797.29 298.85 126.54 541.12 998.15 773.60 176.17 117.19 192.77 769.74 10.49 7.94 760.03 912.22 750.35 758.83 318.03 657.53 364.81 366.24 435.62 361.77 25 ER1h ExonRegion 1 1286.00 3012.15 660.66 296.52 969.63 1755.36 1341.37 410.23 322.48 471.92 1250.37 73.36 159.82 1177.18 1185.30 1156.83 1144.41 677.25 948.22 878.28 571.68 497.61 632.82 26 E1a_E2a KnownJunction 1 598.40 1328.97 542.65 258.91 432.26 614.59 535.52 398.17 331.33 429.04 662.22 198.96 323.03 235.80 405.09 655.21 575.78 511.20 444.81 565.41 297.58 101.16 325.32 27 E1a_E4a KnownJunction 0 23.49 139.05 47.34 36.93 44.31 59.40 47.12 28.14 12.53 38.98 26.80 6.15 13.31 14.54 20.77 33.41 12.90 37.39 55.15 34.90 19.95 2.45 7.77 28 ER2a ExonRegion 0 260.57 631.51 424.29 212.26 233.25 328.77 247.09 321.05 279.21 362.16 517.19 445.56 358.05 199.77 264.43 378.99 451.37 368.49 278.49 305.23 215.08 102.51 169.82 29 E2_Da KnownBoundary 0 3.56 13.09 5.00 4.13 3.48 13.91 4.33 5.09 3.01 4.81 2.68 18.46 13.15 2.47 4.45 0.00 0.00 0.00 4.05 2.43 0.00 0.00 0.00 30 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E2a_E4a KnownJunction 1 112.32 263.44 218.98 113.90 125.13 150.31 91.06 145.11 134.72 200.82 392.10 667.27 173.69 209.02 282.84 159.87 354.84 83.65 126.31 145.99 174.71 107.04 65.39 32 E2a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER2b ExonRegion 0 1.66 4.21 1.90 4.43 8.19 7.98 8.92 4.41 4.21 5.06 2.88 12.04 9.82 2.69 6.18 1.37 1.55 1.41 1.79 5.48 0.52 5.15 1.73 34 ER3a ExonRegion 0 15.25 15.38 10.94 8.58 7.06 6.45 9.56 11.32 12.30 9.60 5.78 6.69 8.83 7.30 14.12 14.08 11.01 20.52 10.04 11.21 6.17 3.99 14.42 35 ER4a ExonRegion 0 337.46 509.40 833.54 393.49 295.57 206.05 189.79 530.60 399.51 604.08 1342.06 722.00 293.27 1283.73 1337.61 1147.33 1250.71 586.55 815.74 855.22 506.54 553.02 506.77 36 E4a_E5a KnownJunction 1 379.55 800.78 1142.48 698.05 543.72 506.13 405.33 722.94 552.48 770.43 1396.88 1092.81 534.38 1142.80 1461.90 1907.11 934.17 1086.58 1061.87 1134.40 475.07 538.55 946.93 37 ER5a ExonRegion 0 1123.48 3122.68 1098.40 627.19 900.50 1207.64 969.35 757.79 518.56 840.69 2006.22 1583.85 638.03 1493.39 1503.15 1027.60 1461.28 629.60 751.65 957.45 642.44 716.33 433.61 38 E5_Da KnownBoundary 0 38.30 12.63 29.66 15.18 42.61 15.45 35.42 44.36 20.08 31.43 41.69 62.42 39.12 38.14 17.80 46.57 26.65 10.90 14.21 29.53 14.89 64.60 24.76 39 E5a_E6a KnownJunction 1 1900.48 5084.55 1389.07 857.50 1040.92 852.63 946.98 942.98 599.07 997.28 2370.34 2111.64 563.76 2206.97 2109.04 1075.79 1614.77 505.36 880.97 1145.59 630.01 998.41 440.22 40 E5a_E7a NovelJunction 0 3.33 3.29 5.14 2.06 0.00 0.00 14.88 5.05 1.79 2.66 5.00 12.30 6.82 9.65 13.60 20.17 21.22 8.58 14.12 0.00 0.00 0.00 3.50 41 ER5b ExonRegion 0 29.06 21.64 22.50 20.18 47.48 29.61 39.37 30.53 19.70 30.35 38.67 78.87 47.43 37.99 23.04 29.83 29.64 9.76 10.16 18.32 7.62 49.47 15.02 42 ER6a ExonRegion 0 1390.87 3475.97 1517.32 826.37 1215.38 932.49 1000.26 1013.15 607.93 1018.08 2261.85 1943.18 1049.75 1732.77 1870.76 1217.68 1583.56 612.52 954.39 1019.59 522.42 1022.24 520.93 43 E6a_E7a KnownJunction 0 2092.00 2943.49 2436.28 1292.44 2823.01 1712.20 1649.52 1407.73 789.92 1272.61 2592.08 2438.59 1889.00 2591.04 2551.59 1685.11 1886.11 641.24 1551.76 1292.98 419.22 1466.66 676.42 44 E7_Ab NovelBoundary 0 1133.76 2148.83 1982.13 1017.59 1369.95 1028.56 1178.53 1043.45 667.50 1015.95 2132.43 2051.32 1327.19 2385.26 2707.34 1792.35 1668.35 779.95 1398.06 1330.82 347.81 1116.84 726.95 45 ER7a ExonRegion 0 1236.53 2151.45 2127.95 1114.42 1814.57 1234.71 1188.00 1214.04 736.84 1148.76 2476.56 2213.36 1510.01 2470.41 2510.48 1718.57 1808.00 813.15 1421.16 1246.48 403.02 1248.19 703.66 46 ER7b ExonRegion 0 839.33 1950.25 2025.85 1034.81 1134.31 864.52 927.69 1137.63 718.17 1098.15 2132.63 1657.08 859.96 2180.61 2513.15 2055.87 1569.03 1056.77 1653.29 1361.53 423.90 1383.35 964.88 47 E7b_E8a KnownJunction 0 10.52 5.99 0.00 3.60 3.74 0.00 0.00 0.00 4.54 1.16 2.05 15.30 0.00 4.47 8.90 8.12 4.77 0.00 4.61 3.20 0.00 2.94 3.76 48 E7b_E9b KnownJunction 0 936.09 2366.22 2088.48 1097.10 1260.87 939.35 1044.14 1195.91 755.98 1165.81 2009.72 1315.18 672.85 2102.14 2690.16 2033.65 1437.77 1178.31 1841.84 1472.27 467.90 1539.66 1007.46 49 ER8a ExonRegion 0 3.68 14.48 0.47 0.62 7.37 3.19 8.06 2.67 2.38 1.19 5.09 25.29 28.80 19.49 13.34 5.68 6.37 1.39 1.90 5.67 0.00 17.29 5.46 50 E8a_E9b KnownJunction 0 6.82 10.13 1.36 1.70 12.65 0.00 8.48 4.76 0.00 1.45 0.00 7.65 0.00 2.47 4.45 8.29 8.98 2.57 0.00 6.07 0.00 13.41 3.50 51 ER9a ExonRegion 0 34.54 85.05 70.42 36.65 46.83 30.19 32.34 48.21 27.97 42.56 90.09 58.60 32.83 80.51 104.65 78.97 61.66 42.50 59.61 58.81 18.02 61.39 34.19 52 E9_Ac KnownBoundary 1 775.32 1947.09 1215.98 632.42 596.86 552.52 551.33 836.02 524.07 793.96 1754.50 558.63 314.43 824.60 1347.92 929.07 1289.85 592.16 796.63 996.47 411.50 558.51 344.70 53 ER9b ExonRegion 0 876.50 2440.42 1796.85 938.69 1057.42 872.54 912.79 1166.60 741.84 1111.92 2459.61 1134.05 586.84 1782.78 2382.47 1761.36 1709.66 1055.87 1531.96 1407.84 540.46 1263.39 788.31 54 ER9c ExonRegion 0 988.77 3618.16 1728.93 792.87 1097.61 823.18 953.12 1027.03 680.36 1051.53 2312.89 1527.78 1035.00 1594.73 2138.50 1055.46 1624.52 601.78 974.49 1113.92 637.67 857.26 454.52 55 E9_Da NovelBoundary 0 266.12 1047.58 1013.09 497.24 351.10 310.79 334.89 591.14 399.19 645.14 886.22 551.28 423.84 545.24 818.59 424.50 688.17 326.20 535.26 608.24 273.67 441.19 200.86 56 E9b_E10a KnownJunction 0 2964.53 5014.17 2057.97 1009.66 1483.11 998.86 1022.63 1198.70 802.65 1231.49 3106.37 1362.59 1459.81 1666.03 2324.62 2502.16 2371.20 1073.15 2727.89 1563.93 946.74 1370.59 995.33 57 ER9d ExonRegion 0 1853.01 3726.39 1695.83 816.17 1079.47 796.92 759.39 1006.82 687.87 1077.60 2668.23 1230.81 1166.48 1520.52 2001.24 1901.31 1957.20 717.32 2073.44 1341.03 808.92 1105.90 784.29 58 ER10a ExonRegion 0 1051.08 2085.59 1300.76 636.10 584.33 473.59 494.03 835.50 543.18 850.87 1808.34 1273.09 779.22 1454.09 2050.29 1187.07 1484.35 441.80 1212.77 936.74 544.02 835.68 498.99 59 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E10a_E13a KnownJunction 0 111.87 57.49 127.14 26.90 24.11 18.63 14.53 56.19 29.51 22.67 11.95 0.00 0.00 2.47 14.22 0.00 0.00 1.66 9.60 26.21 337.30 435.25 103.46 62 I10 Intron 0 26.59 56.53 16.36 24.42 42.62 29.07 30.72 21.30 21.00 29.06 41.44 73.32 79.08 51.99 19.33 43.92 32.86 11.14 18.53 29.66 4.89 44.19 16.87 63 I10_AR1 ActiveIntronRegion 0 21.65 49.26 17.19 23.50 42.14 34.79 32.78 24.26 23.77 34.73 45.00 65.18 87.29 55.97 15.50 48.39 34.64 11.77 20.57 32.36 4.45 47.38 20.55 64 I10_SR1 SilentIntronRegion 0 33.22 66.36 15.30 25.72 43.41 21.58 28.09 17.45 17.39 21.64 36.88 84.36 68.48 46.90 24.47 38.16 30.61 10.34 15.89 26.18 5.49 40.13 12.04 65 ER11a ExonRegion 0 1.59 8.13 7.96 4.09 0.67 4.13 2.32 5.62 3.71 4.59 23.19 22.73 11.73 14.62 28.29 6.69 10.73 4.16 3.19 3.72 0.55 1.04 0.00 66 I11 Intron 0 86.12 69.92 37.95 48.26 83.72 45.39 41.17 40.34 28.20 39.95 58.78 59.40 51.76 72.70 52.70 62.90 37.20 22.41 26.16 33.65 15.82 41.55 28.61 67 I11_AR1 ActiveIntronRegion 0 72.78 60.53 52.12 59.52 77.37 52.12 40.56 43.53 36.04 46.95 82.35 82.26 55.79 85.78 52.79 100.07 56.14 29.24 39.09 44.52 24.74 45.14 43.51 68 I11_AR2 ActiveIntronRegion 0 78.65 55.24 20.80 33.82 91.91 41.78 29.00 33.40 20.97 30.55 47.09 34.99 41.84 60.75 46.84 45.32 24.31 18.86 20.66 25.73 9.26 31.40 20.59 69 I11_SR3 SilentIntronRegion 0 142.61 62.88 39.03 46.37 94.01 34.69 57.07 38.26 25.79 28.75 32.70 35.98 52.86 72.36 62.97 33.74 27.88 18.85 16.36 25.45 0.48 58.34 17.98 70 I11_AR3 ActiveIntronRegion 0 158.51 121.69 42.32 67.64 119.19 45.13 60.89 53.13 31.15 52.29 47.99 75.51 75.75 54.94 67.46 31.19 26.78 11.64 8.12 31.32 2.76 58.12 12.39 71 ER12a ExonRegion 0 377.03 900.60 1024.41 409.34 477.87 317.10 367.70 750.57 414.06 770.75 1417.55 952.60 466.85 1146.94 1321.56 526.07 1091.35 296.54 507.59 574.47 51.76 310.33 61.75 72 E12_Da NovelBoundary 0 490.61 547.73 510.09 202.47 328.86 171.83 194.98 365.11 192.50 374.97 501.86 247.13 158.92 301.08 265.28 251.56 406.73 104.96 216.01 228.50 33.73 145.37 47.46 73 E12a_E13a KnownJunction 0 740.65 1272.60 949.23 433.84 769.95 416.18 532.87 639.93 367.82 669.91 1479.16 1233.25 709.53 1267.36 1605.67 550.03 1073.68 261.94 548.72 624.28 62.40 312.47 88.44 74 I12 Intron 0 107.16 72.51 42.90 58.09 80.44 38.61 35.29 30.41 26.44 34.74 40.22 49.04 29.92 41.85 41.94 24.24 25.30 7.39 14.73 14.50 8.85 40.57 15.36 75 I12_AR1 ActiveIntronRegion 0 107.67 72.85 43.10 58.36 80.83 38.80 35.45 30.55 26.57 34.90 40.41 49.25 30.05 42.04 42.14 24.35 25.43 7.42 14.80 14.57 8.89 40.77 15.44 76 ER13a ExonRegion 0 610.15 717.87 690.98 368.32 605.77 266.40 309.69 445.75 236.95 407.08 756.25 830.90 622.87 610.48 890.00 421.18 589.59 167.76 501.92 340.79 182.48 338.69 165.65 77 ER13b ExonRegion 1 122.49 99.14 90.37 24.19 82.28 66.70 57.43 77.56 29.49 70.82 70.79 150.99 71.52 88.11 115.69 30.46 37.14 9.47 17.12 54.79 12.12 34.38 34.51 78 ER13c ExonRegion 0 0.00 2.32 0.79 1.46 6.12 0.00 1.70 1.36 2.12 3.28 6.35 4.64 0.00 3.71 7.67 0.00 2.12 0.00 0.00 2.13 0.00 2.53 3.78