Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AKR1CL2 Gene 0 11.94 30.82 29.65 16.95 14.46 26.62 21.04 20.88 19.50 24.13 0.00 0.61 0.00 0.00 0.00 0.00 0.00 30.10 20.25 28.30 4.55 5.19 10.74 2 462718 Transcript 0 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 474119 Transcript 0 0.00 0.27 0.00 0.00 0.31 0.35 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.21 0.00 4 334019 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 345253 Transcript 0 0.00 2.96 13.39 4.59 0.00 7.33 0.00 8.34 9.40 12.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.51 3.76 19.81 2.90 0.00 0.00 6 463345 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 298375 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 441590 Transcript 0 0.00 13.92 2.88 1.77 0.00 0.22 3.80 0.00 5.08 11.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.20 0.00 4.25 3.62 0.00 0.00 9 487985 Transcript 0 2.05 2.21 0.37 2.81 1.34 1.46 5.02 4.31 0.64 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 9.04 1.45 3.53 0.48 10 IG47_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.06 0.00 11 IG47_AR3 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.42 0.00 12 IG47_AR5 ActiveIntergenicRegion 0 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.32 12.05 9.66 5.32 13 IG47_AR6 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.73 22.92 14.68 14 IG47_AR7 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.54 21.48 17.62 15 IG47_SR4 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 12.24 11.94 4.61 16 IG47_AR8 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 8.25 11.51 3.15 17 IG47_SR5 SilentIntergenicRegion 0 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 15.93 11.28 4.97 18 IG47_AR9 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.25 22.95 6.80 4.16 19 ER1a ExonRegion 0 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2a ExonRegion 0 0.00 0.54 0.00 0.00 0.63 0.70 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.43 0.00 22 E2_Ab KnownBoundary 0 0.00 5.53 6.30 0.00 0.00 4.88 0.00 4.23 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 8.09 8.88 0.00 0.00 0.00 23 E2_Ac KnownBoundary 0 0.00 3.29 0.00 1.86 4.24 2.21 4.20 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.34 5.75 2.59 3.12 3.50 24 ER2b ExonRegion 0 0.00 2.03 0.00 0.00 2.68 2.37 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 2.08 0.00 25 ER2c ExonRegion 0 0.00 0.85 0.00 0.16 1.18 4.95 1.35 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.07 0.79 0.00 0.97 0.00 26 E2_Da KnownBoundary 0 0.00 0.00 1.77 0.00 0.00 5.45 2.25 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.00 0.00 0.00 0.00 0.00 27 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E2_Ad KnownBoundary 0 5.56 0.00 1.21 0.00 3.23 2.90 2.21 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.34 0.00 0.00 2.51 0.00 29 ER2d ExonRegion 0 0.76 0.00 0.00 0.00 0.76 5.24 1.32 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 2.05 0.23 0.00 0.82 0.00 30 ER2e ExonRegion 0 3.36 1.82 3.51 0.94 4.34 22.04 4.36 2.83 3.05 4.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.35 4.94 9.24 0.00 4.24 5.06 31 E2b_E3a KnownJunction 0 0.00 0.00 13.07 6.89 0.00 7.89 1.99 7.27 8.94 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.98 0.00 15.47 0.00 2.94 0.00 32 I2 Intron 0 3.20 16.28 10.62 5.57 6.53 14.77 11.83 9.27 9.27 9.55 0.00 1.03 0.00 0.00 0.00 0.00 0.00 5.67 4.49 8.94 1.16 1.63 2.37 33 I2_AR1 ActiveIntronRegion 0 1.26 9.43 13.02 2.66 2.54 7.41 2.83 6.43 6.56 10.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.43 4.17 7.84 0.52 1.98 2.44 34 I2_SR1 SilentIntronRegion 0 4.48 26.26 14.46 8.81 10.26 21.55 16.43 13.51 12.26 11.64 0.00 1.88 0.00 0.00 0.00 0.00 0.00 6.63 6.27 10.95 1.44 1.68 2.67 35 E3_Aa NovelBoundary 0 3.70 10.00 3.46 8.92 4.16 2.73 18.64 9.94 9.81 8.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.37 0.00 5.50 2.41 2.88 4.35 36 ER3a ExonRegion 0 8.06 26.45 31.80 27.12 17.17 41.09 22.25 24.50 21.55 38.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.14 32.31 47.78 6.76 10.33 20.78 37 E3a_E4a KnownJunction 0 18.08 33.02 35.36 22.97 0.00 21.24 27.78 25.10 26.48 18.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.58 24.47 47.62 5.07 8.76 22.96 38 E4_Ab NovelBoundary 0 0.00 5.20 15.73 6.33 3.23 19.36 11.66 9.36 8.77 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.24 7.15 16.75 0.00 0.00 2.99 39 ER4a ExonRegion 0 10.58 32.20 36.35 21.81 2.68 31.17 26.04 19.30 26.14 23.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.74 22.30 46.81 4.41 6.95 20.56 40 ER4b ExonRegion 0 12.43 37.85 41.18 31.73 26.54 74.41 32.28 26.05 28.67 37.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.95 26.20 59.69 13.62 10.27 21.59 41 E4a_E5a KnownJunction 0 17.26 39.53 49.23 38.22 34.72 52.81 25.75 43.62 48.58 37.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.80 13.37 54.33 19.46 13.66 19.12 42 ER5a ExonRegion 0 11.90 52.03 57.37 31.26 22.54 46.58 26.70 40.32 41.29 38.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.17 44.83 58.94 14.58 8.29 24.04 43 E5a_E6a KnownJunction 0 29.19 27.56 33.50 34.79 20.54 43.04 22.04 30.97 28.30 37.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.46 24.19 47.43 20.14 8.70 8.02 44 E5a_E9a KnownJunction 0 0.00 2.96 13.39 4.59 0.00 7.33 0.00 8.34 9.40 12.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.51 3.76 19.81 2.90 0.00 0.00 45 ER6a ExonRegion 0 7.57 30.02 38.18 21.70 23.76 46.14 33.25 35.38 32.99 36.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.71 32.84 43.04 10.02 3.95 19.72 46 E6_Da NovelBoundary 0 0.00 2.76 6.09 2.06 11.63 16.69 8.44 2.42 6.42 7.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.90 8.28 9.20 3.09 3.12 3.24 47 E6a_E7a KnownJunction 0 20.00 14.01 20.05 17.88 31.49 92.45 43.37 24.60 33.56 23.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.16 35.77 16.75 2.84 5.51 3.24 48 E6a_E9a KnownJunction 0 3.41 18.35 41.25 8.76 6.54 0.00 9.36 17.25 1.56 11.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.18 12.24 8.05 3.09 0.00 0.00 49 E7_Aa NovelBoundary 0 0.00 20.33 2.87 6.59 7.13 16.01 1.72 6.08 1.24 13.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.90 8.66 24.03 0.00 5.39 0.00 50 ER7a ExonRegion 0 9.15 16.12 16.45 14.80 22.41 54.85 36.22 17.90 26.89 24.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.26 18.77 29.71 8.70 7.55 12.53 51 E7_Ab KnownBoundary 0 9.93 12.56 22.09 10.22 14.18 31.35 35.15 21.48 22.68 32.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.57 16.47 36.69 13.16 14.27 15.37 52 ER7b ExonRegion 0 4.79 5.57 14.79 7.63 10.70 14.23 18.76 11.93 21.56 20.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.66 10.69 18.03 9.13 5.46 6.57 53 E7_Da NovelBoundary 0 0.00 18.48 6.50 2.76 7.47 8.29 4.50 0.00 5.79 10.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.58 22.21 14.38 2.41 0.00 3.59 54 E7a_E8a KnownJunction 0 3.78 3.22 9.31 6.76 0.00 14.71 18.37 11.58 22.08 19.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.20 4.80 8.63 6.24 2.51 4.35 55 E7a_E9a NovelJunction 0 0.00 0.00 8.28 0.00 0.00 27.48 1.63 1.64 1.77 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 2.75 2.84 0.00 0.00 56 E8_Aa NovelBoundary 0 0.00 15.13 1.12 4.76 4.33 2.78 12.72 7.56 3.79 13.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.27 9.60 19.30 3.15 0.00 3.33 57 ER8a ExonRegion 0 1.97 12.27 9.89 8.62 23.37 25.48 19.39 17.04 30.81 19.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.83 17.92 22.11 4.92 7.52 4.14 58 E8_Da NovelBoundary 0 2.96 13.55 10.35 13.68 21.05 16.35 19.56 18.65 27.92 21.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 16.19 15.28 5.44 5.51 0.00 59 E8a_E9a KnownJunction 0 0.00 0.00 0.00 1.60 0.00 0.00 4.50 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.20 2.90 3.12 0.00 60 E8b_E9a KnownJunction 0 6.00 20.52 4.55 14.12 26.83 20.90 19.21 23.62 37.96 21.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.19 12.42 20.84 2.35 5.39 0.00 61 ER8b ExonRegion 0 2.49 16.39 8.79 12.19 24.08 17.48 19.63 24.20 37.27 20.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.46 11.62 16.02 3.89 6.62 0.86 62 E9_Aa NovelBoundary 0 6.37 6.18 18.24 5.53 0.00 7.78 13.29 7.11 4.43 13.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.47 0.00 15.60 0.00 2.69 0.00 63 ER9a ExonRegion 0 12.25 44.79 40.13 25.83 33.06 43.79 43.66 37.96 38.33 46.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.83 17.37 42.88 5.98 7.32 15.24 64 E9_Da NovelBoundary 0 0.00 12.70 2.90 1.60 10.44 0.00 12.32 13.55 4.37 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.81 0.00 20.96 0.00 7.65 3.67 65 E9a_E10a KnownJunction 0 0.00 21.51 5.65 2.06 0.00 0.00 5.96 0.00 6.86 18.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.03 0.00 5.69 5.68 0.00 0.00 66 E9a_E11a KnownJunction 0 7.56 21.97 39.50 8.29 0.00 28.56 76.22 25.59 27.26 31.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.99 16.47 17.13 0.00 5.82 10.67 67 I9 Intron 0 0.67 3.70 7.36 2.57 1.90 3.48 3.03 5.19 6.47 4.12 0.00 0.00 0.00 0.09 0.00 0.00 0.00 18.11 4.03 10.25 0.70 1.48 2.09 68 I9_SR1 SilentIntronRegion 0 0.67 3.70 7.37 2.57 1.91 3.48 3.04 5.20 6.48 4.13 0.00 0.00 0.00 0.09 0.00 0.00 0.00 18.13 4.03 10.27 0.70 1.48 2.10 69 E10_Aa NovelBoundary 0 0.00 3.35 6.53 3.96 0.00 7.89 2.12 0.00 4.75 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.64 9.32 5.43 0.00 0.00 0.00 70 ER10a ExonRegion 0 0.00 6.34 0.11 1.48 0.00 0.43 1.64 0.00 3.31 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 2.82 1.56 0.00 0.00 71 E10_Da NovelBoundary 0 0.00 17.83 25.99 9.99 4.33 14.03 12.14 3.78 4.89 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.06 4.80 26.27 2.90 2.88 0.00 72 I10 Intron 0 3.21 11.94 10.72 5.67 5.11 8.98 6.35 8.07 7.93 12.21 0.00 0.39 0.00 0.00 0.00 0.00 0.00 18.66 5.14 17.39 1.08 1.43 2.59 73 I10_AR1 ActiveIntronRegion 0 1.39 11.40 8.65 5.72 2.82 8.40 3.49 7.90 5.65 10.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.04 2.95 12.64 0.58 1.10 2.70 74 I10_SR1 SilentIntronRegion 0 4.32 12.38 12.04 5.67 6.52 9.38 8.10 8.25 9.36 13.49 0.00 0.62 0.00 0.00 0.00 0.00 0.00 17.99 6.49 20.38 1.39 1.64 2.54 75 E11_Aa NovelBoundary 0 28.30 38.22 17.36 12.52 8.15 7.95 17.53 13.64 10.33 9.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.18 14.21 22.95 3.15 5.88 4.10 76 ER11a ExonRegion 0 28.18 47.09 46.22 13.09 10.22 37.14 36.54 33.88 31.41 38.01 0.00 1.93 0.00 0.00 0.00 0.00 0.00 13.18 27.63 32.68 0.00 8.16 14.97 77 E11_Da KnownBoundary 0 27.41 53.02 31.13 15.28 4.33 14.03 21.29 18.11 24.83 28.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.23 14.40 18.22 0.00 3.12 3.24 78 E11a_E12a KnownJunction 0 10.15 3.29 10.88 3.86 11.97 7.55 12.32 13.60 4.89 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 3.86 5.62 0.00 0.00 7.26 79 ER11b ExonRegion 0 21.59 42.85 20.39 10.63 17.30 15.97 28.44 14.93 15.05 25.81 0.00 0.31 0.00 0.00 0.00 0.00 0.00 4.79 13.76 20.75 0.00 7.34 4.13 80 E11_Db KnownBoundary 0 20.00 23.88 4.91 10.65 7.89 2.90 15.59 22.47 5.82 16.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.56 30.55 0.00 10.65 3.93 81 E11b_E12a KnownJunction 0 23.56 12.63 14.19 3.20 11.46 19.14 28.48 4.48 7.90 18.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 3.86 9.14 0.00 2.33 0.00 82 ER11c ExonRegion 0 4.09 4.42 0.75 4.03 2.68 2.91 5.53 6.24 1.29 5.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 11.89 0.00 3.94 0.96 83 E11_Dc NovelBoundary 0 6.82 28.61 8.37 8.92 3.65 2.33 18.68 8.26 11.40 9.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 3.26 0.00 5.02 3.67 84 I11 Intron 0 5.32 26.29 5.25 5.11 5.77 3.95 9.99 5.55 5.29 4.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.96 10.30 6.88 0.00 2.24 0.00 85 I11_SR1 SilentIntronRegion 0 5.40 26.67 5.32 5.18 5.85 4.01 10.13 5.63 5.36 4.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.03 10.44 6.98 0.00 2.28 0.00 86 E12_Aa NovelBoundary 0 16.74 31.51 12.65 11.92 3.40 10.68 28.00 12.73 7.55 12.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.69 0.00 14.19 3.15 5.27 0.00 87 ER12a ExonRegion 0 20.23 46.33 41.07 20.01 12.70 15.45 20.59 22.68 15.73 22.23 0.00 1.73 0.00 0.00 0.00 0.00 0.00 29.55 22.00 23.16 1.97 3.38 8.10 88 ER12b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 1.10 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 0.00 0.00 0.00 0.00