Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AKR1C2 Gene 0 16.08 32.24 9.28 12.95 12.20 51.40 1.32 35.74 44.29 11.41 0.00 0.89 0.04 0.04 0.00 0.00 0.00 15.89 3.34 20.85 61.07 19.28 30.85 2 407674 Transcript 0 0.27 0.00 0.23 0.78 0.29 0.00 0.51 0.00 0.23 0.22 0.00 1.67 0.42 0.15 0.00 0.00 0.00 0.00 0.00 1.09 0.24 0.27 0.00 3 455179 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 4 460124 Transcript 0 4.75 16.23 1.14 5.05 3.91 14.98 0.05 11.24 22.91 2.88 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.48 2.57 5.63 7.55 5.91 8.93 5 380753 Transcript 0 4.71 2.85 2.42 1.81 3.75 10.65 0.37 10.96 13.78 1.58 0.00 0.00 0.00 0.07 0.00 0.00 0.00 1.87 1.54 3.96 3.20 8.61 8.13 6 380646 Transcript 0 48.90 121.36 82.11 49.14 28.27 264.79 12.67 130.82 161.28 78.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.22 0.00 24.48 219.68 103.48 132.74 7 455190 Transcript 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 331192 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 421196 Transcript 0 10.15 65.12 7.33 14.88 8.32 7.50 0.00 12.53 16.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.17 0.00 8.69 13.28 0.00 3.33 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 3.14 1.70 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 13 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 0.00 6.45 11.95 20.74 15.20 12.04 3.75 3.78 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 3.12 4.18 15 ER3a ExonRegion 0 1.08 0.00 0.93 3.11 0.00 0.00 2.03 0.00 0.94 0.87 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.34 0.00 1.06 0.00 16 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I3 Intron 0 0.18 0.17 0.30 0.34 1.11 16.30 0.99 19.47 0.31 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 1.60 1.85 1.24 0.55 0.35 0.24 18 I3_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 1.14 26.61 2.24 27.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 2.71 2.71 0.00 0.00 0.00 19 I3_SR1 SilentIntronRegion 0 0.23 0.22 0.39 0.43 1.05 14.17 0.71 18.14 0.39 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 1.58 1.70 0.84 0.71 0.45 0.31 20 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.20 0.00 1.21 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 21 ER4b ExonRegion 0 0.00 0.00 0.61 0.00 0.00 7.34 0.00 1.73 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 22 ER4c ExonRegion 0 0.00 0.40 1.25 0.10 0.00 13.69 0.00 16.00 0.13 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 2.79 3.01 0.02 2.86 0.00 0.03 23 E4_Ad KnownBoundary 0 12.97 11.31 7.07 14.95 3.74 22.94 0.00 36.64 8.54 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.69 9.32 5.11 0.00 5.45 0.00 24 ER4d ExonRegion 0 18.95 109.07 10.52 14.86 43.40 130.96 2.71 55.94 21.93 14.46 0.00 0.42 0.00 0.00 0.00 0.00 0.00 27.81 13.67 41.67 52.51 13.42 21.63 25 E4_Ae KnownBoundary 0 0.00 8.62 6.56 6.09 3.57 22.88 0.00 4.31 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 11.67 8.44 12.54 0.00 3.50 26 E4_Af KnownBoundary 0 127.43 580.49 14.84 27.17 221.99 539.06 17.14 33.72 29.05 20.82 0.00 5.70 0.00 0.00 0.00 0.00 0.00 36.64 0.00 203.51 242.54 78.26 95.61 27 ER4e ExonRegion 0 82.54 433.66 34.31 55.88 179.28 472.66 13.24 120.99 90.16 51.61 0.00 4.33 0.00 0.00 0.00 0.00 0.00 85.00 12.74 168.08 218.17 64.59 73.42 28 ER4f ExonRegion 0 215.62 277.55 38.52 60.78 123.85 454.22 10.01 132.12 205.46 55.04 0.00 1.90 0.00 0.00 0.00 0.00 0.00 106.08 5.86 130.64 447.44 131.70 274.14 29 E4a_E5a KnownJunction 0 0.00 26.38 14.64 13.19 4.33 58.83 0.00 64.12 53.88 33.58 0.00 6.30 0.00 0.00 0.00 0.00 0.00 24.62 11.39 15.47 76.91 11.94 3.24 30 I4_AR1 ActiveIntronRegion 0 1.66 2.49 0.64 2.87 3.42 17.88 0.75 6.61 6.69 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.14 4.00 1.39 3.31 5.53 4.95 4.70 31 E5_Aa NovelBoundary 0 0.00 0.00 1.83 1.93 0.00 19.08 0.00 20.70 10.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.43 0.00 2.56 10.26 2.51 3.59 32 ER5a ExonRegion 0 9.35 49.70 32.55 57.61 41.82 124.48 1.54 135.62 185.77 49.49 0.00 0.77 0.00 0.00 0.00 0.00 0.00 84.74 10.85 127.36 384.25 109.92 197.33 33 E5a_E6a KnownJunction 0 3.78 121.03 26.76 54.34 221.05 568.31 13.69 136.78 180.15 26.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.74 12.71 92.87 251.62 68.83 122.33 34 ER6a ExonRegion 0 21.97 142.84 29.41 51.79 127.26 591.69 13.98 140.32 184.40 43.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.04 10.51 77.32 223.10 63.34 104.19 35 E6_Da KnownBoundary 0 81.94 513.99 179.18 187.49 297.54 1991.01 121.09 329.87 409.37 165.28 0.00 12.60 0.00 0.00 0.00 0.00 0.00 150.72 4.80 178.97 395.19 402.86 277.09 36 E6a_E6d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER6b ExonRegion 0 46.63 311.50 37.66 71.48 37.06 349.27 6.52 184.17 199.92 55.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.76 12.46 105.33 272.11 84.68 92.70 38 E6_Db KnownBoundary 0 2.82 10.92 0.00 1.93 0.00 10.68 0.00 4.60 6.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.36 0.00 15.88 39 E6b_E6b KnownJunction 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E6b_E6c KnownJunction 0 38.01 152.14 20.96 34.46 8.66 105.96 1.94 128.85 130.41 39.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.58 9.60 61.30 121.89 30.00 49.00 41 E6b_E7a KnownJunction 0 10.15 65.12 7.33 14.88 8.32 7.50 0.00 12.53 16.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.17 0.00 8.69 13.28 0.00 3.33 42 ER6c ExonRegion 0 6.82 22.30 0.94 4.44 4.10 16.59 0.00 11.12 24.63 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 1.81 7.09 10.82 5.83 9.66 43 E6_Ab KnownBoundary 0 13.71 0.00 0.00 8.19 3.99 49.35 0.00 11.58 27.46 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 19.37 8.65 26.02 4.35 44 ER6d ExonRegion 0 3.39 12.72 2.10 7.34 3.08 21.28 0.25 11.20 29.89 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.34 2.37 5.41 8.51 9.02 10.52 45 E6_Dc KnownBoundary 0 10.52 28.15 11.97 15.75 3.65 7.89 0.00 14.46 27.52 9.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.56 0.00 6.33 9.02 10.90 6.57 46 ER6e ExonRegion 0 2.67 10.15 1.35 5.67 3.71 13.37 0.11 11.37 21.18 2.83 0.00 1.77 0.00 0.00 0.00 0.00 0.00 2.68 3.34 4.17 4.27 5.99 8.20 47 E6_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER6f ExonRegion 0 128.28 188.73 25.52 42.38 28.19 125.28 2.55 150.92 179.60 54.49 0.00 3.06 0.00 0.00 0.00 0.00 0.00 50.48 10.80 70.37 253.27 33.59 47.70 49 E6_Ad KnownBoundary 0 380.96 377.04 171.25 180.43 126.83 437.42 28.53 382.40 416.86 179.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 108.48 18.54 140.94 477.11 396.06 174.91 50 ER6g ExonRegion 0 114.94 118.96 40.16 44.98 29.28 173.29 11.03 156.62 145.30 52.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.45 7.52 92.43 244.49 56.89 105.07 51 E6d_E7a KnownJunction 0 138.17 135.96 50.68 62.40 18.34 201.30 9.01 178.26 148.99 48.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.98 4.80 115.24 290.17 90.01 141.11 52 I6 Intron 0 10.56 11.65 3.71 12.01 13.84 24.40 0.73 15.23 29.93 4.42 0.00 0.66 0.00 0.00 0.38 0.00 0.00 2.22 0.00 7.47 7.32 7.70 8.14 53 I6_SR1 SilentIntronRegion 0 12.50 13.39 4.40 13.86 16.25 28.55 0.87 17.83 34.63 5.20 0.00 0.78 0.00 0.00 0.45 0.00 0.00 2.54 0.00 8.62 8.52 8.83 9.45 54 E7_Aa NovelBoundary 0 15.93 21.97 0.00 8.12 25.47 26.41 0.00 13.51 21.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 0.00 14.96 14.95 5.57 12.29 55 E7a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER7a ExonRegion 0 114.29 171.56 60.71 77.06 24.08 174.04 9.63 170.65 163.26 54.32 0.00 1.57 0.00 0.00 0.00 0.00 0.00 82.31 10.71 108.32 288.29 85.80 157.51 57 E7_Ab KnownBoundary 0 462.90 314.68 256.79 258.11 130.90 434.98 34.58 388.52 486.14 157.79 0.00 69.92 0.00 0.00 0.00 0.00 0.00 218.50 26.45 226.46 722.92 564.94 511.15 58 ER7b ExonRegion 0 132.41 163.09 63.62 73.38 31.25 128.88 4.18 174.64 175.83 53.58 0.00 4.33 0.00 0.00 0.00 0.00 0.00 91.13 13.51 100.00 282.16 90.34 154.12 59 ER7c ExonRegion 0 98.62 102.94 43.58 67.19 42.10 123.75 2.71 148.49 186.60 58.25 0.00 1.39 0.00 0.00 0.00 0.00 0.00 76.50 8.13 67.52 266.93 54.22 74.39 60 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER8a ExonRegion 0 33.96 85.41 46.22 46.08 23.60 123.31 2.20 133.70 125.38 47.28 0.00 7.28 0.00 0.00 0.00 0.00 0.00 72.26 11.99 69.83 246.01 51.33 88.71 62 E8_Da NovelBoundary 0 3.63 6.45 1.57 4.10 0.00 2.90 0.00 5.26 3.56 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.26 2.97 0.00 11.27 63 E8a_E9a KnownJunction 0 36.82 128.27 41.57 39.02 84.72 215.27 5.65 129.96 94.56 37.74 0.00 11.70 0.00 0.00 0.00 0.00 0.00 80.92 13.27 92.81 301.91 48.80 105.94 64 E9a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER9a ExonRegion 0 39.24 93.70 38.18 33.97 49.60 161.37 3.06 108.23 97.76 31.85 0.00 8.66 0.00 0.00 0.00 0.00 0.00 68.08 9.56 64.16 213.42 40.71 93.29 66 ER9b ExonRegion 0 30.47 84.61 25.63 23.71 19.73 108.16 9.60 72.78 69.27 30.46 0.00 1.26 0.00 0.00 0.00 0.00 0.00 41.34 1.73 22.87 48.07 13.07 34.87 67 E9_Db KnownBoundary 0 95.94 210.42 34.98 28.50 67.32 410.73 23.32 28.38 59.87 9.80 0.00 5.55 0.00 0.00 5.93 0.00 0.00 52.48 0.00 22.63 204.98 128.96 246.70 68 E9b_E9b KnownJunction 0 48.90 121.36 82.11 49.14 28.27 264.79 12.67 130.82 161.28 78.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.22 0.00 24.48 219.68 103.48 132.74 69 E9_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E9_Ac KnownBoundary 0 52.45 96.10 75.04 62.13 19.02 104.14 7.68 166.97 164.21 75.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.08 4.05 43.72 211.77 195.40 127.36 71 ER9c ExonRegion 0 19.05 90.16 28.18 25.44 16.05 108.81 10.59 73.17 80.69 35.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.11 3.19 32.62 67.58 15.97 20.56 72 ER9d ExonRegion 0 13.76 87.44 26.04 29.98 12.71 120.57 11.25 79.94 90.16 37.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.19 3.19 34.04 93.11 21.36 22.76 73 ER9e ExonRegion 0 17.34 102.46 31.60 34.41 10.33 123.54 4.58 129.51 109.69 42.54 0.00 3.19 0.00 0.00 0.00 0.00 0.00 58.19 4.97 60.21 293.36 36.30 52.14 74 E9_Dc KnownBoundary 0 96.54 226.74 84.36 85.87 67.32 331.85 31.27 231.82 245.17 85.29 0.00 31.66 0.00 0.00 0.00 0.00 0.00 99.70 4.33 135.82 579.66 232.44 288.61 75 E9c_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 E9_Dd NovelBoundary 0 71.86 172.93 40.39 54.04 54.75 209.60 8.17 107.86 97.39 21.89 0.00 18.01 0.00 0.00 0.00 0.00 0.00 69.39 4.61 53.69 208.31 248.24 188.05 77 ER9f ExonRegion 0 31.75 93.54 25.66 29.73 14.05 105.90 1.16 116.99 79.36 25.16 0.00 1.08 0.00 0.00 0.00 0.00 0.00 57.86 0.00 36.97 166.52 14.71 46.62 78 E9e_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER9g ExonRegion 0 19.13 82.08 18.33 16.95 16.38 93.08 0.00 71.83 51.58 15.87 0.00 4.33 0.00 0.00 0.00 0.00 0.00 43.02 2.42 23.23 57.47 11.33 37.24 80 ER10a ExonRegion 0 8.24 71.23 19.28 16.28 15.49 88.46 1.57 52.54 40.95 17.08 0.00 3.08 0.00 0.00 0.00 0.00 0.00 36.18 6.45 21.28 53.24 15.19 50.15 81 E10_Ab KnownBoundary 0 96.46 122.08 82.70 74.25 59.93 138.73 10.47 204.26 183.19 71.45 0.00 11.70 0.00 0.00 0.00 0.00 0.00 70.10 8.75 37.20 245.94 58.36 163.04 82 ER10b ExonRegion 0 31.14 54.73 26.82 24.29 3.03 57.58 2.59 90.61 55.99 29.56 0.00 1.54 0.00 0.00 0.00 0.00 0.00 32.52 9.49 41.61 202.99 23.71 69.70 83 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 I10_AR1 ActiveIntronRegion 0 0.00 2.03 1.23 3.95 4.41 2.38 0.00 5.10 14.57 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 3.54 2.94 85 ER11a ExonRegion 0 17.54 40.35 18.25 18.91 15.78 61.99 2.27 49.08 65.65 20.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.61 2.92 29.64 106.23 18.28 40.28 86 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 E11_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 4.49 0.00 2.55 1.68 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 88 ER11b ExonRegion 0 13.40 24.00 8.82 3.36 4.10 30.56 0.00 10.26 17.04 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 4.82 14.40 8.61 15.47 89 ER11c ExonRegion 0 4.71 2.85 2.42 1.81 3.75 10.65 0.37 10.96 13.78 1.58 0.00 0.00 0.00 0.07 0.00 0.00 0.00 1.87 1.54 3.96 3.20 8.61 8.13