Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ECHDC3 Gene 0 13.09 3.18 13.16 10.90 13.30 21.09 9.36 24.70 9.02 31.34 11.41 13.93 16.50 21.51 7.91 34.13 20.72 8.75 9.81 9.28 10.48 24.70 24.81 2 496136 Transcript 0 2.13 2.63 10.21 10.21 3.47 0.79 1.71 14.05 12.77 15.98 0.84 0.51 1.11 1.99 4.18 2.08 4.45 16.45 3.67 2.75 1.90 0.62 6.98 3 379215 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 420401 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 428613 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 422887 Transcript 0 3.19 1.44 0.07 0.60 1.96 0.59 2.17 4.66 2.44 0.84 0.15 0.69 0.88 1.30 1.70 3.53 1.14 0.15 0.08 3.04 1.20 1.94 0.43 7 495787 Transcript 0 1.41 0.12 2.22 1.16 3.05 4.27 1.74 6.07 1.65 2.78 3.07 2.97 10.25 10.34 2.77 19.33 7.84 3.04 2.23 2.65 0.67 5.30 6.05 8 IG30_AR2 ActiveIntergenicRegion 0 13.75 0.00 0.29 0.16 7.94 0.58 0.80 0.20 0.00 0.00 1.98 23.18 3.15 10.50 5.32 5.13 5.96 0.00 0.00 0.17 0.00 0.00 0.00 9 ER1a ExonRegion 0 4.36 0.00 0.32 0.74 1.12 8.63 2.52 1.77 0.00 8.59 4.41 0.00 0.00 9.28 3.37 10.79 12.92 2.24 6.61 7.54 1.82 2.75 9.14 10 E1_Ab KnownBoundary 0 18.00 0.00 3.34 1.93 4.16 31.40 4.37 4.31 0.00 20.07 4.90 0.00 0.00 26.61 11.13 31.79 25.71 4.31 8.85 8.95 2.29 5.27 25.18 11 ER1b ExonRegion 0 6.27 0.00 1.27 0.47 0.35 4.66 1.02 3.56 0.00 9.34 6.48 0.00 1.50 11.03 0.78 14.29 13.03 0.83 0.88 2.96 3.87 3.02 9.21 12 E1_Ac KnownBoundary 1 0.00 0.00 3.61 2.93 0.00 0.00 0.00 9.12 0.00 20.55 5.37 0.00 0.00 14.13 0.00 0.00 40.58 6.63 0.00 5.43 6.30 2.51 0.00 13 ER1c ExonRegion 0 4.00 1.35 2.96 0.87 1.08 7.54 2.18 6.67 3.19 16.48 7.63 7.22 5.69 21.02 3.00 22.60 17.56 4.49 7.29 5.15 5.14 10.37 15.71 14 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E2b KnownJunction 1 28.15 9.14 5.77 6.89 7.39 55.59 14.84 11.71 9.14 27.40 14.16 36.46 87.98 31.26 6.30 86.81 39.46 7.34 4.80 12.08 5.87 2.82 30.39 16 ER1d ExonRegion 0 0.01 0.00 0.73 0.02 1.41 0.01 0.50 0.03 0.59 1.20 0.02 0.00 0.00 0.34 0.00 2.93 0.93 0.00 0.00 1.57 0.71 0.67 0.04 17 E1b_E2b KnownJunction 0 0.00 0.00 1.48 0.00 4.16 0.00 1.72 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 18 ER2a ExonRegion 0 3.19 1.44 0.07 0.60 1.96 0.59 2.17 4.66 2.44 0.84 0.15 0.69 0.88 1.30 1.70 3.53 1.14 0.15 0.08 3.04 1.20 1.94 0.43 19 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.86 0.00 0.00 4.46 11.99 2.14 3.06 0.00 0.00 0.00 0.00 0.00 8.72 4.02 0.00 0.00 0.00 2.66 2.63 0.00 20 ER2b ExonRegion 0 19.57 2.40 20.22 20.69 18.23 37.31 22.86 43.88 14.76 59.68 27.75 47.28 40.12 56.54 13.67 83.40 55.76 17.00 27.82 23.80 14.34 46.27 59.17 21 E2a_E3a KnownJunction 1 32.01 3.22 18.98 12.45 16.72 25.04 17.09 40.05 10.33 45.53 26.74 49.82 92.69 38.73 21.26 41.78 63.21 16.17 4.24 8.63 15.14 16.84 33.97 22 ER2c ExonRegion 0 21.91 2.03 20.22 15.81 24.62 31.36 22.51 47.10 13.71 53.04 41.85 44.59 55.58 43.61 14.51 37.15 71.13 15.98 2.87 13.40 13.22 13.54 32.89 23 ER3a ExonRegion 1 20.88 3.71 25.98 26.55 15.70 20.23 14.17 61.66 15.30 64.58 31.66 62.69 89.88 67.28 13.94 132.11 66.96 18.31 19.11 27.85 21.86 44.52 67.30 24 E3_Da NovelBoundary 0 0.00 0.00 1.21 0.00 0.00 0.00 1.99 8.30 4.63 5.75 0.00 0.00 0.00 2.47 0.00 10.94 8.13 0.00 0.00 0.00 8.46 0.00 8.71 25 E3a_E4a KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 6.31 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 3.50 26 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E5b KnownJunction 0 62.83 3.09 45.27 52.21 45.42 33.96 22.26 86.54 22.71 74.30 52.86 93.78 129.05 123.14 34.61 272.07 98.36 36.89 68.24 34.58 24.59 109.00 134.11 28 E4_Aa NovelBoundary 0 16.08 23.88 9.17 4.93 18.76 15.79 21.99 22.34 11.69 11.15 2.21 0.00 5.68 12.13 4.33 22.81 13.18 1.87 12.99 10.87 16.68 8.33 3.93 29 ER4a ExonRegion 0 6.40 7.88 29.08 30.64 10.41 2.38 5.14 42.16 37.23 38.60 2.51 1.54 3.34 5.96 12.54 6.25 5.40 49.34 11.01 8.26 5.70 1.85 17.45 30 E4_Da NovelBoundary 0 502.61 507.54 713.99 675.57 421.99 333.05 708.90 862.14 734.08 693.04 130.45 119.14 144.47 128.08 231.66 462.19 431.51 783.76 432.20 502.45 337.74 168.76 603.18 31 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 3.04 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 32 E5_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 15.04 0.00 0.00 0.00 0.00 0.00 0.00 3.59 33 ER5a ExonRegion 0 1.98 0.10 2.26 2.07 3.60 1.78 0.25 7.72 1.83 2.87 0.57 1.22 2.49 2.69 1.86 19.64 4.02 2.22 3.28 1.89 0.52 6.25 5.41 34 E5_Ab KnownBoundary 0 11.19 0.00 3.02 3.13 4.33 0.00 2.08 11.13 2.55 2.90 0.00 0.00 6.82 2.47 6.30 8.03 0.00 0.00 0.00 6.20 0.00 2.45 12.12 35 ER5b ExonRegion 0 12.53 2.40 17.88 17.32 15.79 25.93 12.98 39.29 12.37 39.72 22.44 40.42 42.16 48.07 17.37 80.56 40.24 9.05 13.15 13.60 14.65 38.96 41.40 36 E5_Da KnownBoundary 0 6.52 5.79 10.82 29.13 31.49 42.48 21.46 44.81 16.09 56.14 19.11 29.56 60.22 44.85 9.27 59.98 37.40 4.52 14.40 17.64 19.77 44.64 56.43 37 E5_Db KnownBoundary 1 20.30 3.09 1.21 2.06 19.86 27.88 14.35 4.23 1.68 1.67 15.16 24.31 67.37 54.68 11.50 116.21 62.83 5.14 8.38 11.63 5.50 29.33 21.00 38 E5b_E6a KnownJunction 0 15.41 12.89 21.38 13.02 18.34 13.69 16.52 25.10 9.06 40.51 17.69 24.61 5.84 12.07 29.79 48.53 16.36 6.43 3.76 9.14 15.94 42.37 40.04 39 ER5c ExonRegion 1 19.13 9.49 18.20 21.10 33.10 48.56 25.55 41.03 14.73 47.66 28.56 37.04 87.03 67.25 26.54 133.64 61.98 7.73 15.34 16.71 19.18 62.35 67.87 40 ER5d ExonRegion 0 2.26 0.27 4.40 1.42 5.55 11.05 4.98 10.50 3.11 5.48 8.65 7.70 28.26 28.34 6.44 38.35 19.51 6.91 3.39 6.07 1.48 9.65 12.73 41 E5_Dc NovelBoundary 0 0.00 3.03 2.87 0.00 0.00 0.00 5.39 13.10 2.81 4.16 7.00 18.61 35.71 48.50 0.00 70.67 35.25 0.00 0.00 11.31 8.09 5.63 3.41 42 I5_AR1 ActiveIntronRegion 0 5.37 3.80 3.55 3.86 7.12 8.49 8.27 15.92 4.40 9.58 6.82 29.75 25.27 23.20 3.47 40.43 29.72 3.71 3.81 6.22 4.36 5.46 8.99 43 I5_SR1 SilentIntronRegion 0 12.84 11.45 4.18 4.73 11.41 7.04 8.97 13.15 3.19 14.63 4.54 36.25 17.49 14.24 4.42 21.11 19.76 2.59 4.48 6.16 1.34 6.36 7.50 44 I5_AR2 ActiveIntronRegion 0 16.94 10.84 6.06 3.80 9.49 4.25 6.15 25.00 5.07 12.76 3.44 25.02 8.96 9.39 2.66 21.12 10.55 5.43 2.77 4.10 2.95 7.67 5.89 45 ER6a ExonRegion 0 18.52 2.26 17.37 7.10 9.85 30.19 13.91 26.83 11.69 41.49 16.08 16.64 9.86 16.63 11.56 26.03 15.42 7.12 10.25 5.83 12.72 34.33 22.25 46 E6_Da KnownBoundary 0 28.30 6.71 22.12 11.79 0.00 11.02 21.37 26.16 11.40 36.16 12.16 0.00 0.00 7.06 13.97 8.46 27.96 2.57 21.74 17.64 5.87 38.76 23.99 47 ER6b ExonRegion 0 22.23 5.66 18.30 14.16 24.53 36.04 13.16 31.41 9.41 43.83 10.65 8.48 8.37 15.91 7.94 24.73 16.59 6.64 12.45 10.04 16.51 38.47 28.83 48 ER6c ExonRegion 0 1.21 0.87 0.70 1.56 1.91 3.14 6.24 1.73 0.18 2.46 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 2.28 0.00 0.00 5.66 0.00