Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLXDC2 Gene 0 29.34 37.46 7.50 8.61 12.01 28.99 8.56 22.14 30.35 14.46 0.06 0.00 1.67 5.26 7.57 0.30 8.23 61.95 22.45 43.89 51.60 132.35 196.06 2 377252 Transcript 0 26.82 24.40 1.83 10.85 28.35 27.65 3.80 27.85 33.65 19.10 0.00 0.00 0.00 7.24 30.16 0.00 18.61 103.76 36.05 50.62 41.33 199.19 244.48 3 377238 Transcript 0 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 1.32 0.01 0.00 0.04 0.02 4 377242 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 5 ER1a ExonRegion 0 5.35 11.48 2.84 1.98 2.08 9.78 1.93 6.78 12.99 7.18 0.00 0.00 0.00 2.40 3.67 0.32 4.71 52.01 16.11 30.18 34.72 40.38 109.71 6 E1a_E2a KnownJunction 0 6.08 28.15 3.99 1.60 7.64 27.71 3.97 19.14 18.37 12.14 0.00 0.00 0.00 9.65 4.45 0.00 4.39 122.70 13.84 31.58 62.77 106.36 253.61 7 ER2a ExonRegion 0 16.57 25.59 5.01 4.08 6.53 17.93 7.16 23.55 26.20 13.89 0.00 0.00 0.00 5.44 7.05 0.00 12.02 80.99 21.05 51.43 61.07 113.21 184.08 8 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2a_E4a KnownJunction 0 26.82 24.40 1.83 10.85 28.35 27.65 3.80 27.85 33.65 19.10 0.00 0.00 0.00 7.24 30.16 0.00 18.61 103.76 36.05 50.62 41.33 199.19 244.48 10 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 11 ER3a ExonRegion 0 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.02 0.00 0.11 0.06 12 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 0.00 0.00 0.00 13 ER4a ExonRegion 0 26.09 53.25 12.33 10.30 21.11 23.55 10.11 36.25 38.39 14.64 0.00 0.00 2.58 7.18 14.72 0.20 12.87 99.90 31.03 67.12 55.74 200.71 267.01 14 E4a_E5a KnownJunction 0 42.75 39.73 10.20 14.12 24.87 41.17 7.86 35.32 56.42 17.86 0.00 0.00 0.00 4.71 13.35 3.50 9.16 82.20 12.80 82.64 53.81 230.18 339.75 15 ER5a ExonRegion 0 25.13 41.51 13.16 11.08 14.26 38.06 12.88 39.88 55.76 21.73 0.00 0.00 0.74 7.56 16.08 1.74 9.01 50.52 27.08 66.47 61.11 202.70 251.25 16 E5a_E6a KnownJunction 0 27.56 66.17 23.89 14.28 11.63 53.15 17.09 58.61 51.74 29.41 0.00 0.00 6.33 7.30 4.45 0.00 11.41 66.86 11.58 77.92 52.33 249.47 261.47 17 ER6a ExonRegion 0 26.76 46.03 13.75 12.11 25.71 45.29 12.78 40.39 61.92 26.65 0.00 0.00 7.51 7.50 9.08 0.72 11.59 76.78 29.86 69.95 64.05 216.53 265.85 18 E6a_E7a KnownJunction 0 48.16 48.74 7.33 11.09 27.33 73.37 8.92 36.27 53.18 34.01 0.00 0.00 13.15 4.89 30.53 4.36 18.33 80.79 46.02 90.12 59.62 146.29 300.65 19 ER7a ExonRegion 0 49.25 78.10 10.13 9.39 8.27 42.02 10.26 34.66 49.02 26.00 0.00 0.00 5.60 9.09 12.09 0.52 15.76 101.30 54.69 62.01 87.65 216.76 334.21 20 E7a_E8a KnownJunction 0 87.05 101.76 15.29 7.36 23.26 64.39 13.87 40.01 58.56 21.41 0.00 0.00 13.31 9.83 8.90 0.00 20.76 111.34 41.98 76.96 70.43 218.66 282.64 21 ER8a ExonRegion 0 80.22 97.79 7.00 14.04 17.85 48.08 16.34 40.93 56.44 23.97 0.00 0.00 7.74 10.64 15.20 0.00 19.51 96.08 46.44 63.68 86.41 217.98 261.89 22 E8a_E9a KnownJunction 0 96.39 137.21 17.44 11.85 47.45 65.81 30.96 41.57 59.81 17.03 0.00 0.00 12.66 7.06 10.26 0.00 21.22 87.80 66.35 69.80 85.75 240.40 351.01 23 ER9a ExonRegion 0 50.53 75.03 22.82 19.48 27.29 63.13 19.62 47.15 60.31 19.47 0.00 0.00 3.71 11.23 12.75 0.00 16.92 76.18 40.45 70.66 78.60 255.62 355.09 24 E9a_E10a KnownJunction 0 41.56 50.58 20.79 13.92 19.52 62.35 20.54 46.29 51.56 21.60 0.00 0.00 0.00 2.47 32.14 0.00 7.29 126.76 64.10 66.73 106.57 288.41 307.90 25 ER10a ExonRegion 0 30.25 57.78 25.66 16.34 17.29 47.14 10.91 39.69 46.39 24.27 0.00 0.00 1.26 8.77 16.63 0.00 10.31 113.30 35.27 70.65 73.34 254.29 335.21 26 E10a_E11a KnownJunction 0 34.97 56.24 35.48 27.04 12.39 50.54 9.36 36.47 50.78 19.74 0.00 0.00 6.82 7.06 20.40 0.00 4.77 81.87 24.57 48.96 74.07 372.97 409.57 27 ER11a ExonRegion 0 28.00 37.44 14.42 13.14 11.67 49.15 9.85 29.84 24.62 17.84 0.00 0.00 1.54 9.11 6.61 0.63 4.49 72.18 26.48 44.23 91.87 223.76 228.87 28 E11a_E12a KnownJunction 0 60.31 55.58 8.31 10.45 35.65 81.94 20.67 42.14 25.58 14.29 0.00 0.00 0.00 19.72 0.00 3.76 4.39 100.23 35.39 50.24 77.84 160.55 245.16 29 ER12a ExonRegion 0 79.17 81.40 13.02 16.63 17.33 48.99 14.95 41.20 46.17 29.16 0.00 0.00 3.17 8.49 10.05 0.75 6.49 112.88 38.33 62.18 93.37 223.89 378.55 30 E12a_E13a KnownJunction 0 74.53 42.49 0.00 17.21 15.62 36.91 20.71 32.37 33.19 24.07 0.00 0.00 0.00 2.24 8.90 0.00 12.62 90.00 24.66 59.70 106.01 206.17 358.01 31 ER13a ExonRegion 0 65.99 48.34 1.51 13.80 15.30 51.91 12.42 39.71 38.38 29.91 0.00 0.00 0.00 11.12 4.98 0.30 20.48 101.58 27.93 62.68 113.24 171.33 271.15 32 E13a_E14a KnownJunction 0 70.83 79.06 4.38 11.45 12.14 80.12 13.12 38.40 38.92 26.97 0.00 0.00 0.00 7.18 4.45 0.00 21.69 80.75 36.90 80.60 121.95 162.02 213.75 33 I13_AR1 ActiveIntronRegion 0 13.43 19.93 3.46 8.82 2.98 1.02 1.62 2.87 5.12 1.90 0.00 0.00 0.00 0.00 0.46 0.00 0.00 7.27 2.84 2.61 0.98 3.48 5.89 34 ER14a ExonRegion 0 48.61 53.92 6.78 13.71 17.80 49.95 15.25 33.59 35.10 21.71 0.00 0.00 2.97 6.06 6.38 0.87 15.32 72.56 20.89 36.91 76.34 148.25 237.63 35 E14_Da NovelBoundary 0 40.67 11.91 6.59 5.03 4.33 0.00 4.50 2.55 3.33 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 9.32 9.01 0.00 3.12 3.24 36 E14a_E15a KnownJunction 0 60.90 53.35 6.71 27.77 21.22 67.40 13.29 35.86 34.98 21.41 0.00 0.00 0.00 11.77 4.70 0.00 25.06 86.22 42.92 37.84 103.91 276.96 535.65 37 I14_SR1 SilentIntronRegion 0 9.18 16.42 2.73 4.68 2.77 1.21 2.65 2.39 2.66 2.14 0.00 0.00 0.13 0.33 1.20 0.00 0.51 9.41 4.65 7.54 0.68 4.05 5.39 38 I14_AR1 ActiveIntronRegion 0 7.54 31.84 2.82 3.57 6.84 0.88 3.84 1.93 3.67 2.09 0.00 0.00 0.00 0.48 0.51 0.00 1.84 9.75 6.09 7.47 1.92 2.49 4.79 39 ER15a ExonRegion 0 41.42 39.69 7.04 12.36 19.25 36.52 11.46 18.89 32.58 12.41 0.30 0.00 1.27 4.59 7.84 0.00 5.26 30.76 13.98 38.27 34.94 156.09 184.58 40 IG45_AR1 ActiveIntergenicRegion 0 10.49 21.55 4.27 6.09 6.88 17.70 7.31 6.93 18.98 6.65 0.00 0.00 0.91 1.17 1.68 0.00 1.48 14.39 10.67 22.90 13.77 81.57 85.59 41 IG45_AR2 ActiveIntergenicRegion 0 3.81 22.57 0.00 1.22 0.80 5.50 1.19 0.77 9.94 1.54 0.00 0.00 0.00 0.40 0.72 0.00 2.97 13.80 6.69 14.68 11.23 64.38 62.55 42 IG45_SR1 SilentIntergenicRegion 0 5.62 9.72 0.00 0.00 2.84 11.69 5.63 0.00 7.82 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.89 5.08 15.82 9.37 60.88 51.48 43 IG45_AR3 ActiveIntergenicRegion 0 9.99 22.77 3.11 7.89 8.90 22.45 7.89 7.67 22.48 11.88 0.23 0.84 0.00 0.16 0.56 0.00 0.78 13.80 6.54 25.99 14.85 101.16 80.47 44 IG45_SR2 SilentIntergenicRegion 0 9.61 19.13 2.23 7.74 9.00 18.25 6.36 5.10 18.75 6.49 0.00 0.00 0.00 0.99 1.52 0.00 0.00 11.94 13.69 16.70 12.07 77.31 76.54 45 IG45_AR4 ActiveIntergenicRegion 0 14.28 42.55 4.97 11.02 18.93 38.41 10.85 13.87 22.97 11.28 0.00 0.00 0.00 0.59 1.28 0.00 0.79 18.23 11.00 21.77 9.41 82.09 81.56 46 IG45_SR3 SilentIntergenicRegion 0 28.07 34.39 3.48 3.44 15.12 18.63 7.48 3.85 1.89 1.43 0.00 0.00 0.00 0.77 0.00 0.00 0.00 9.30 13.24 8.88 1.43 14.47 37.40 47 IG45_AR5 ActiveIntergenicRegion 0 72.44 89.81 16.86 24.29 29.61 42.65 17.25 24.74 28.07 19.95 0.00 0.00 0.00 0.46 2.30 0.00 1.44 15.12 15.56 23.40 11.08 79.60 80.15 48 IG45_SR4 SilentIntergenicRegion 0 46.20 36.49 7.82 7.48 8.31 14.74 6.03 5.17 13.79 4.74 0.00 0.00 0.00 0.00 1.79 0.00 0.00 6.34 16.86 6.78 3.71 16.96 22.78 49 IG45_AR6 ActiveIntergenicRegion 0 21.12 31.81 5.47 4.87 4.54 11.01 7.69 7.11 9.40 9.39 0.00 0.00 0.00 0.00 1.33 0.00 0.00 9.03 6.38 12.84 3.30 18.30 18.26