Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	MASTL	Gene	0	55.43	86.95	63.07	39.22	83.33	59.43	133.07	76.19	35.10	95.84	180.46	192.19	120.08	153.55	122.23	183.18	135.62	134.20	46.10	109.83	13.94	57.82	22.43
2	375946	Transcript	0	1.18	0.68	1.36	0.19	0.83	4.18	1.68	0.97	1.20	0.89	3.07	0.00	0.00	7.10	2.62	2.22	2.59	4.75	1.78	2.26	2.46	1.56	0.47
3	342386	Transcript	0	10.37	6.18	1.83	2.00	15.62	4.66	21.07	19.02	4.51	4.73	26.80	0.00	5.84	35.91	17.80	40.33	13.00	21.39	8.38	5.62	5.68	5.27	0.00
4	375940	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	477034	Transcript	0	0.00	0.00	1.83	3.23	4.33	0.00	1.77	0.00	1.79	1.67	0.00	6.30	0.00	2.47	0.00	4.02	3.74	4.19	0.00	2.81	0.00	2.51	0.00
6	ER1a	ExonRegion	0	1.18	0.68	1.36	0.19	0.83	4.18	1.68	0.97	1.20	0.89	3.07	0.00	0.00	7.10	2.62	2.22	2.59	4.75	1.78	2.26	2.46	1.56	0.47
7	E1_Ab	KnownBoundary	0	0.00	3.09	8.01	3.40	3.82	12.32	8.17	0.00	1.36	9.91	7.53	0.00	0.00	12.13	0.00	10.60	20.57	4.06	0.00	3.20	5.75	8.57	3.93
8	ER1b	ExonRegion	1	8.30	11.13	21.43	9.12	10.33	31.87	25.80	32.18	13.95	47.01	127.15	12.77	10.97	103.91	71.32	157.29	102.23	135.92	40.33	83.15	12.22	19.04	14.70
9	E1a_E2a	KnownJunction	1	12.74	25.59	30.87	9.86	47.28	61.61	82.98	55.86	23.06	70.89	201.21	52.22	66.88	116.96	99.64	399.13	141.00	389.45	53.08	111.28	13.90	51.80	43.62
10	ER2a	ExonRegion	0	8.77	46.88	30.84	22.99	46.65	105.80	133.69	66.67	28.60	91.56	247.31	175.91	106.58	168.26	96.08	199.67	166.41	180.24	32.32	130.79	18.60	49.37	25.88
11	E2a_E3a	KnownJunction	0	17.26	91.17	30.51	27.97	26.83	66.33	123.88	68.84	20.69	116.77	343.19	260.03	110.22	185.89	102.60	143.55	228.33	85.19	36.14	129.75	25.58	63.01	15.54
12	ER3a	ExonRegion	0	31.64	68.60	45.38	28.75	53.50	51.66	111.86	84.26	30.49	117.09	258.77	247.65	152.49	198.33	95.35	163.36	196.19	116.46	35.33	140.09	18.70	78.07	26.62
13	E3a_E4a	KnownJunction	0	61.42	54.46	49.73	44.58	88.54	66.21	199.79	87.08	23.87	142.48	239.11	385.63	225.31	313.97	193.83	279.33	173.73	137.71	40.19	169.00	13.28	96.20	37.82
14	E4_Aa	NovelBoundary	0	69.27	18.81	15.35	4.53	30.56	2.67	76.18	10.80	4.20	2.50	4.84	18.61	6.01	0.00	9.27	15.89	0.00	7.88	4.42	11.95	0.00	2.88	0.00
15	ER4a	ExonRegion	0	42.57	60.73	49.83	37.33	54.24	56.09	145.65	71.37	38.41	124.30	260.16	382.11	201.46	222.87	87.30	234.53	219.34	117.38	37.37	136.05	11.24	83.72	17.36
16	E4a_E5a	KnownJunction	0	42.30	63.28	88.41	41.52	52.21	45.03	147.50	89.79	44.76	138.47	272.81	361.77	225.63	215.26	112.99	224.90	198.97	125.77	61.84	104.50	10.13	82.67	25.01
17	ER5a	ExonRegion	0	34.14	86.78	65.20	40.42	85.85	71.36	172.36	87.34	39.99	126.50	272.09	358.25	231.74	244.63	127.95	284.82	235.41	197.12	69.21	144.12	17.42	90.31	38.81
18	E5a_E6a	KnownJunction	0	30.30	110.77	74.45	39.92	119.02	61.44	190.25	70.73	49.94	140.14	277.39	395.23	190.73	239.16	100.62	267.79	254.98	184.96	49.98	160.75	18.90	70.05	24.50
19	ER6a	ExonRegion	0	21.78	70.02	54.93	26.99	71.52	69.95	155.68	83.40	43.88	130.16	299.39	361.61	227.42	258.32	132.80	296.92	268.25	244.39	65.63	151.60	30.14	66.78	31.08
20	E6_Da	NovelBoundary	1	3.78	0.00	12.83	9.12	3.48	0.00	18.95	9.57	4.57	4.03	10.21	43.66	66.88	37.26	52.78	56.65	17.48	39.13	8.38	9.14	2.59	0.00	3.50
21	E6a_E7a	KnownJunction	0	36.30	90.97	56.09	29.07	104.16	80.92	193.96	98.37	37.76	124.77	325.40	306.70	157.62	289.37	148.34	322.39	277.23	212.70	57.23	176.67	38.86	61.17	40.29
22	E6a_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.84	3.01	2.58	0.00	0.00	9.30	4.70	3.59	13.84	0.00	0.00	0.00	0.00	0.00	0.00
23	E7_Aa	NovelBoundary	0	7.48	6.25	5.06	4.33	15.37	0.00	16.78	8.87	0.00	6.23	17.32	18.46	32.14	38.55	10.26	32.21	34.13	18.61	0.00	11.95	0.00	0.00	16.90
24	ER7a	ExonRegion	0	38.26	73.44	38.21	30.14	87.22	63.17	134.12	74.29	30.11	113.54	257.77	294.05	163.09	246.70	103.52	259.33	218.09	234.41	59.45	150.90	25.87	55.62	32.85
25	E7_Da	NovelBoundary	0	15.11	27.63	21.79	10.52	3.23	0.00	63.24	15.48	4.86	21.49	58.65	49.37	54.87	80.05	58.84	49.22	53.39	50.16	4.52	23.14	9.02	5.33	4.35
26	E7a_E8a	KnownJunction	0	29.41	71.83	31.52	31.73	119.86	48.27	149.00	73.52	27.08	85.58	285.23	224.92	99.83	195.19	81.34	169.78	155.68	218.38	24.38	140.43	27.86	26.82	24.41
27	I7	Intron	0	5.41	8.83	9.17	7.00	11.85	3.90	27.05	11.84	3.13	9.82	19.09	56.94	39.71	33.02	18.53	29.61	19.95	10.07	5.15	17.39	0.94	10.47	3.38
28	I7_AR1	ActiveIntronRegion	0	2.74	14.50	6.71	6.80	10.41	3.96	26.75	12.80	2.78	7.57	20.67	66.31	46.20	32.75	17.91	32.42	28.18	10.93	5.51	19.31	0.95	12.16	3.18
29	I7_SR1	SilentIntronRegion	0	5.69	3.94	10.17	6.46	10.84	3.57	25.10	9.62	3.63	9.75	15.57	51.55	38.20	33.07	19.79	25.64	13.54	8.79	4.92	16.26	0.38	8.50	3.82
30	I7_AR2	ActiveIntronRegion	0	13.34	10.28	13.46	10.06	21.14	5.11	36.70	18.09	2.28	17.91	28.77	48.56	24.56	34.16	15.59	37.14	19.28	12.69	5.00	15.87	3.23	13.18	2.24
31	E8_Aa	NovelBoundary	1	42.38	5.46	17.15	8.76	19.35	14.37	73.71	26.25	6.66	23.50	50.75	92.13	110.22	54.45	60.70	45.20	57.13	32.83	8.75	28.00	0.00	6.12	3.50
32	ER8a	ExonRegion	0	79.38	135.74	89.34	58.38	135.58	86.23	217.56	108.70	53.07	133.41	238.67	298.65	191.46	204.30	154.52	248.91	171.29	153.68	59.73	154.34	14.71	83.33	30.83
33	E8_Da	NovelBoundary	0	0.00	14.54	9.20	10.19	29.12	0.00	69.78	10.10	3.56	10.48	13.64	6.30	21.10	2.12	14.09	19.40	18.05	7.75	0.00	20.07	0.00	5.51	7.51
34	E8a_E9a	KnownJunction	0	47.34	95.64	43.85	11.92	101.10	33.39	89.52	45.63	23.15	60.71	105.82	70.37	58.60	140.27	121.52	176.79	65.17	203.66	36.52	96.13	15.94	42.56	28.85
35	E8a_E9b	KnownJunction	1	90.39	120.31	49.61	27.74	46.01	33.22	72.07	64.28	29.83	86.04	113.50	124.84	73.37	142.92	142.16	271.21	69.47	165.77	76.05	107.32	8.83	65.70	47.21
36	E8a_E10a	NovelJunction	0	2.74	0.00	0.00	0.00	0.00	0.00	0.00	3.61	1.65	0.00	2.05	12.15	0.00	0.00	0.00	12.99	0.00	0.00	0.00	3.26	0.00	0.00	0.00
37	E9_Aa	NovelBoundary	0	17.78	5.00	2.93	2.90	3.31	0.00	24.78	6.04	0.00	2.04	4.74	5.55	12.66	9.01	13.72	10.51	3.65	3.44	0.00	12.40	0.00	0.00	10.93
38	ER9a	ExonRegion	1	68.79	135.74	63.11	26.58	121.75	51.35	113.86	64.38	33.04	90.03	159.46	100.66	80.90	166.07	170.45	288.30	97.38	248.52	66.89	126.60	20.94	59.90	36.71
39	ER9b	ExonRegion	0	87.85	178.38	90.57	43.09	74.79	61.64	125.87	81.83	42.83	120.34	173.34	136.22	107.33	194.71	187.19	240.51	145.26	242.85	70.52	107.65	32.16	64.62	31.66
40	E9a_E10a	KnownJunction	0	53.42	91.76	53.01	24.24	60.36	45.71	131.87	54.71	34.87	93.02	101.87	39.61	75.48	133.56	110.02	107.66	63.39	175.89	47.72	81.24	28.97	28.90	14.85
41	E9a_E11a	KnownJunction	0	10.37	6.18	1.83	2.00	15.62	4.66	21.07	19.02	4.51	4.73	26.80	0.00	5.84	35.91	17.80	40.33	13.00	21.39	8.38	5.62	5.68	5.27	0.00
42	E9a_E12a	KnownJunction	0	0.00	0.00	1.83	3.23	4.33	0.00	1.77	0.00	1.79	1.67	0.00	6.30	0.00	2.47	0.00	4.02	3.74	4.19	0.00	2.81	0.00	2.51	0.00
43	E10_Aa	NovelBoundary	0	10.52	15.79	8.07	22.14	28.18	11.13	25.39	27.19	15.57	18.08	7.37	19.81	13.31	21.84	24.23	22.47	15.90	30.34	9.41	17.58	8.40	13.04	7.60
44	ER10a	ExonRegion	0	96.69	116.66	93.98	53.63	145.15	81.76	196.12	92.82	41.77	100.22	159.96	82.11	73.07	186.53	195.68	297.06	137.22	285.19	95.45	123.42	27.01	80.11	45.60
45	E10a_E11a	KnownJunction	0	99.13	87.68	109.52	79.24	140.75	73.71	169.50	104.78	23.67	88.59	141.67	81.78	101.78	160.93	216.82	268.82	103.88	191.85	125.46	99.33	13.90	83.03	25.01
46	E10a_E12a	NovelJunction	0	3.56	2.83	1.51	1.50	0.00	9.09	16.25	4.07	1.22	3.17	7.26	5.55	0.00	2.47	0.00	7.86	0.00	9.49	20.52	0.00	0.00	0.00	0.00
47	E11_Aa	NovelBoundary	0	0.00	19.86	9.58	20.01	0.00	4.71	5.79	5.34	7.90	18.91	2.05	0.00	0.00	5.06	10.26	8.54	3.55	8.62	4.80	14.83	0.00	3.12	0.00
48	ER11a	ExonRegion	0	110.22	114.42	94.31	63.17	105.69	80.33	136.76	102.35	38.36	100.51	241.38	136.12	82.63	151.47	216.60	202.02	135.37	152.77	63.36	123.95	13.33	65.24	24.39
49	E11_Da	NovelBoundary	0	13.04	21.05	11.71	9.12	3.23	7.50	1.85	12.16	16.29	21.46	7.53	12.60	27.27	6.36	9.89	8.12	0.00	7.34	4.14	12.08	2.66	8.02	11.01
50	E11a_E12a	KnownJunction	1	105.50	116.43	63.54	56.00	101.87	36.29	126.22	95.99	31.13	118.06	182.84	106.83	80.68	104.19	224.24	176.36	148.11	132.44	54.21	71.14	16.37	51.68	20.83
51	I11	Intron	0	18.81	14.53	19.52	11.88	29.73	13.88	34.86	16.45	9.37	17.21	13.59	16.49	12.81	26.78	27.38	35.87	17.55	20.17	8.42	17.72	1.61	5.33	5.53
52	I11_AR1	ActiveIntronRegion	0	18.44	21.26	24.87	12.87	42.38	18.30	40.68	20.81	11.37	24.09	14.69	29.18	19.24	31.72	31.46	41.89	17.25	24.61	9.08	16.85	1.75	9.90	4.65
53	I11_SR2	SilentIntronRegion	0	19.97	11.67	21.53	12.40	30.79	15.29	38.83	17.31	10.04	15.56	12.66	15.59	14.11	28.46	30.23	36.73	22.18	22.14	10.25	17.26	1.42	4.22	5.91
54	I11_AR3	ActiveIntronRegion	0	27.97	19.42	25.49	15.80	26.31	10.92	34.21	21.17	10.66	26.66	21.64	17.79	10.69	25.38	29.65	39.91	15.40	20.56	8.32	31.70	2.37	7.30	8.21
55	E12_Aa	NovelBoundary	0	67.05	39.53	36.93	20.44	39.90	24.08	44.38	32.82	17.62	38.76	24.74	69.17	26.78	43.79	46.11	23.24	23.28	21.93	9.22	43.78	2.97	5.45	16.82
56	ER12a	ExonRegion	0	105.04	119.42	126.18	70.25	112.02	51.85	132.35	117.27	45.16	132.55	191.29	171.73	85.77	132.12	229.44	168.51	126.58	115.77	55.69	113.55	9.35	74.01	18.22
57	E12_Da	KnownBoundary	0	85.94	85.45	113.60	50.34	80.48	36.57	82.72	92.62	52.26	65.92	65.86	110.44	69.48	69.63	106.31	68.36	22.16	17.87	24.75	71.72	3.15	59.70	0.00
58	ER12b	ExonRegion	1	72.05	63.23	39.88	33.46	72.55	36.66	79.47	46.99	24.52	34.55	24.58	78.23	60.22	34.70	66.71	17.83	19.97	18.79	8.62	30.21	1.35	22.51	2.98
59	IG48_SR1	SilentIntergenicRegion	0	4.41	12.70	8.57	4.23	4.18	4.77	8.96	16.09	6.70	15.12	11.06	28.23	18.09	10.84	18.92	7.73	15.46	13.41	9.95	18.80	4.59	3.25	1.53
60	IG48_AR2	ActiveIntergenicRegion	0	8.39	13.59	4.12	10.46	15.24	7.91	16.07	16.01	8.75	10.83	4.19	10.38	5.00	2.61	3.67	4.26	6.36	8.92	4.25	11.94	0.65	1.75	1.31
61	IG48_AR3	ActiveIntergenicRegion	0	17.07	26.34	3.95	8.00	38.22	13.74	16.29	15.72	6.92	7.77	2.12	3.78	11.39	0.00	3.32	7.31	2.15	11.17	0.00	16.48	0.00	2.15	4.66