Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPAG6 Gene 0 0.65 0.06 6.86 1.08 17.53 31.28 12.21 8.89 14.30 26.00 9.67 13.13 0.92 65.41 31.51 37.20 20.43 0.59 6.59 0.33 0.12 0.03 0.00 2 376601 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 376603 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376624 Transcript 0 1.54 0.00 0.45 0.00 0.00 0.33 0.00 0.79 0.00 0.63 0.00 0.00 0.00 1.33 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 488555 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.50 0.00 2.34 0.00 0.00 0.00 5.70 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 456231 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 313311 Transcript 0 0.00 0.00 0.00 2.06 0.00 0.00 4.50 2.55 1.10 4.11 2.68 0.00 0.00 9.89 4.45 16.32 4.68 0.00 0.00 0.00 0.00 0.00 0.00 8 435326 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 494631 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 490361 Transcript 0 0.87 0.00 0.75 0.25 7.75 10.23 4.50 4.43 2.05 5.54 2.07 2.38 0.40 15.43 5.78 8.80 1.58 0.00 0.66 0.22 0.00 0.00 0.00 11 487973 Transcript 0 0.00 0.00 0.00 0.10 0.00 0.26 0.66 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.94 0.00 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.20 0.00 0.00 1.43 1.99 0.00 0.21 0.00 0.00 0.00 0.00 3.25 4.67 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 7.13 8.68 0.00 1.37 0.25 0.00 0.00 0.00 8.12 9.03 4.62 0.37 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 0.00 0.00 1.23 0.00 0.00 9.17 11.92 0.00 2.47 1.15 0.00 0.00 0.00 8.12 11.61 8.92 3.30 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1d ExonRegion 0 0.00 0.00 1.23 0.00 0.00 9.17 11.92 0.00 2.47 1.15 0.00 0.00 0.00 8.12 11.61 8.92 3.30 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1e ExonRegion 0 0.00 0.00 0.55 0.00 4.94 16.16 11.35 0.95 1.35 2.21 2.14 1.16 0.00 28.48 8.16 29.53 10.72 0.00 6.37 0.00 0.00 0.00 0.00 17 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.83 6.76 0.00 0.00 1.61 0.00 0.00 0.00 26.78 10.01 40.50 12.34 0.00 4.80 0.00 0.00 0.00 0.00 18 ER2a ExonRegion 0 0.00 0.00 1.54 0.00 2.93 2.83 2.36 1.37 6.78 6.50 0.00 4.96 0.00 82.03 26.56 53.03 28.37 0.21 2.69 1.13 0.00 0.00 0.00 19 E2_Da KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 2.90 6.49 0.00 1.79 1.32 0.00 0.00 0.00 14.07 9.39 8.29 8.04 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E3a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 6.39 0.00 12.60 0.00 99.24 28.06 64.60 4.39 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.50 0.00 2.34 0.00 0.00 0.00 5.70 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2b ExonRegion 0 0.00 0.00 0.23 0.00 0.60 2.24 1.90 0.58 0.24 2.02 0.86 0.00 0.00 9.34 3.04 7.72 4.04 0.53 1.43 0.00 0.00 0.00 0.00 23 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 1 0.00 0.00 2.42 0.50 14.52 29.75 14.94 4.14 11.15 20.22 2.36 10.42 0.00 100.49 19.60 54.37 32.87 2.35 6.28 0.65 0.00 0.31 0.00 25 E3a_E4a KnownJunction 1 0.00 0.00 5.29 2.80 3.57 63.09 9.80 2.51 9.32 27.96 0.00 25.06 0.00 103.01 39.43 56.48 26.55 1.95 4.80 0.00 0.00 2.94 0.00 26 E3a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 Ix_AR1 ActiveIntronRegion 0 1.46 0.00 0.00 0.00 1.84 0.00 0.00 0.00 0.38 0.00 39.78 4.91 0.00 20.41 39.95 23.01 9.55 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4a ExonRegion 0 0.06 0.00 8.28 1.02 9.57 25.69 6.35 8.66 15.56 23.84 26.16 11.39 0.00 127.81 48.96 87.35 46.37 1.90 8.48 0.36 0.00 0.29 0.00 29 E4a_E5a KnownJunction 0 0.00 0.00 1.30 1.96 20.63 26.69 16.03 11.17 17.13 25.38 11.79 0.00 0.00 153.39 36.96 80.58 57.13 2.16 0.00 3.26 0.00 0.00 0.00 30 E4a_E8a NovelJunction 0 0.00 0.00 0.00 1.50 0.00 2.44 0.00 0.00 1.50 3.33 17.27 0.00 0.00 4.59 4.45 30.59 3.46 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 2.12 0.00 5.78 1.01 18.52 19.75 18.20 10.28 19.10 27.85 13.18 4.55 0.00 129.97 38.01 74.68 50.87 1.85 8.74 1.09 0.00 0.00 0.00 32 E5_Da KnownBoundary 0 2.82 0.00 10.64 0.00 15.03 12.27 20.93 12.16 21.24 32.02 11.42 6.15 0.00 140.97 39.06 92.88 32.07 1.95 17.98 0.00 0.00 0.00 0.00 33 ER5b ExonRegion 0 2.43 0.00 11.95 0.09 8.92 50.31 23.17 12.96 16.91 27.00 29.68 9.92 0.00 147.19 47.81 115.23 44.08 1.96 14.93 0.00 0.00 0.00 0.00 34 E5_Ab KnownBoundary 0 0.00 0.00 6.15 0.00 19.02 62.12 23.32 4.85 12.47 15.61 20.53 6.30 0.00 155.69 69.23 105.44 48.62 2.57 7.81 0.00 0.00 0.00 0.00 35 ER5c ExonRegion 0 0.96 0.00 6.67 2.41 17.40 31.71 11.28 7.65 14.89 24.12 17.83 15.28 3.31 114.55 49.30 62.96 32.12 2.03 2.11 0.91 0.00 0.00 0.00 36 E5b_E6a KnownJunction 0 0.00 0.00 7.10 1.53 15.62 34.07 7.20 6.20 11.75 28.72 19.90 6.60 0.00 81.94 26.21 48.02 26.74 2.40 4.42 0.00 0.00 0.00 0.00 37 E5b_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 3.36 0.00 8.39 4.38 10.32 0.00 0.00 66.69 23.86 23.67 21.69 0.00 0.00 0.00 0.00 0.00 0.00 38 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 1 0.00 0.00 11.44 1.36 15.16 30.44 5.56 7.49 13.01 26.76 16.49 4.33 0.00 76.01 14.31 65.19 24.65 3.45 15.93 0.00 0.00 0.00 0.00 40 ER6b ExonRegion 0 0.00 0.00 16.74 1.30 10.85 35.05 12.41 9.20 15.20 29.15 7.11 13.21 0.00 89.74 25.27 57.61 27.55 2.16 10.94 0.00 0.71 0.00 0.00 41 E6b_E7a KnownJunction 1 0.00 0.00 13.69 0.00 7.81 34.98 7.86 6.78 10.13 26.03 0.00 25.66 0.00 89.76 33.38 41.19 53.67 0.00 4.33 0.00 0.00 0.00 0.00 42 ER7a ExonRegion 0 0.62 0.00 9.99 1.58 13.05 32.54 8.80 8.31 10.88 27.64 10.69 21.23 0.00 113.29 53.71 49.89 39.41 0.00 7.39 0.00 0.64 0.00 0.00 43 E7_Ab KnownBoundary 0 3.70 0.00 10.56 1.76 15.11 39.18 18.68 9.69 14.67 40.86 17.53 27.46 0.00 124.38 46.36 89.55 22.72 0.00 4.52 0.00 3.09 0.00 0.00 44 ER7b ExonRegion 0 0.95 0.00 15.38 1.57 10.64 32.78 13.57 9.98 18.06 37.85 16.67 12.88 0.00 164.24 81.89 79.28 40.60 0.00 14.10 0.00 0.99 0.00 0.00 45 E7a_E8a KnownJunction 0 0.00 0.00 22.18 1.86 12.05 54.51 13.20 12.90 22.60 38.57 16.79 11.55 0.00 180.71 81.83 83.57 57.69 0.00 23.34 0.00 0.00 0.00 0.00 46 ER8a ExonRegion 0 2.71 0.00 16.83 0.93 15.80 59.83 18.45 10.56 19.23 32.80 16.96 18.41 0.00 171.31 76.94 96.46 62.19 0.00 22.68 1.45 0.00 0.00 0.00 47 E8_Ab KnownBoundary 0 0.00 0.00 2.48 0.00 0.00 16.01 16.74 3.49 7.00 12.38 9.79 0.00 0.00 34.02 26.95 43.75 8.60 0.00 0.00 0.00 0.00 0.00 0.00 48 E8_Ac KnownBoundary 0 3.48 0.00 2.84 0.00 3.90 25.38 8.17 4.35 5.67 11.47 15.00 5.70 0.00 38.79 16.94 22.81 21.13 0.00 0.00 0.00 0.00 0.00 0.00 49 ER8b ExonRegion 0 4.23 0.00 9.80 0.00 10.70 44.01 18.54 10.37 19.76 33.83 25.13 25.98 0.00 141.30 73.98 92.14 49.51 0.00 6.37 0.00 0.00 0.00 0.00 50 ER8c ExonRegion 0 1.91 0.00 12.31 1.39 28.57 58.71 19.50 15.26 20.59 37.56 30.05 18.97 0.00 116.57 81.29 82.60 51.84 0.43 7.04 0.72 0.00 0.00 0.00 51 E8a_E9a KnownJunction 0 0.00 0.00 20.37 3.80 16.13 64.28 16.83 25.42 23.99 45.18 22.06 24.76 0.00 122.32 137.34 81.86 51.43 2.40 12.80 2.75 0.00 0.00 0.00 52 ER9a ExonRegion 0 1.14 0.00 14.11 0.99 13.49 83.49 20.70 25.51 28.11 49.14 28.99 38.87 2.07 167.52 81.48 105.65 54.97 0.95 13.51 0.27 0.00 0.00 0.00 53 E9_Da NovelBoundary 0 0.00 0.00 6.74 1.56 14.94 76.32 9.85 15.40 20.05 44.59 22.64 29.71 0.00 97.53 46.60 56.40 54.42 0.00 12.89 0.00 0.00 0.00 0.00 54 E9_Db NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 7.53 22.37 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 55 E9b_E10a KnownJunction 0 0.00 0.00 10.17 2.06 36.16 36.06 11.97 22.67 15.54 38.79 16.43 26.56 0.00 80.94 68.98 56.91 19.92 0.00 4.33 0.00 0.00 0.00 0.00 56 E9b_E11a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 4.50 2.55 1.10 4.11 2.68 0.00 0.00 9.89 4.45 16.32 4.68 0.00 0.00 0.00 0.00 0.00 0.00 57 E9b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER9b ExonRegion 0 0.00 0.00 8.91 2.97 22.38 57.68 14.56 21.21 19.65 46.81 26.80 27.75 0.64 99.15 63.96 66.87 38.71 0.00 9.41 0.00 0.00 0.00 0.00 59 ER10a ExonRegion 0 0.74 0.00 7.76 2.94 35.65 48.04 18.15 20.21 24.25 43.55 20.12 26.84 6.65 104.00 49.42 51.56 30.50 0.96 10.49 0.00 0.00 0.00 0.00 60 E10_Da KnownBoundary 1 0.00 0.00 0.00 1.56 11.54 0.00 6.14 15.98 1.33 6.45 2.68 6.30 0.00 39.79 0.00 6.92 4.58 0.00 0.00 0.00 0.00 0.00 0.00 61 E10a_E11a KnownJunction 0 0.00 0.00 5.97 0.00 28.44 56.56 29.68 4.07 27.23 34.87 9.53 18.91 0.00 72.93 18.05 41.10 20.29 0.00 0.00 0.00 0.00 0.00 0.00 62 ER10b ExonRegion 0 0.87 0.00 0.75 0.25 7.75 10.23 4.50 4.43 2.05 5.54 2.07 2.38 0.40 15.43 5.78 8.80 1.58 0.00 0.66 0.22 0.00 0.00 0.00 63 ER11a ExonRegion 0 0.82 0.00 6.97 1.94 45.02 65.88 29.34 14.43 25.40 60.53 12.30 31.29 6.61 70.23 47.39 31.92 14.00 0.00 9.98 0.00 0.00 0.00 0.00 64 E11_Da KnownBoundary 1 2.82 0.00 8.87 5.46 35.23 23.34 23.41 20.21 33.65 77.09 9.21 70.37 0.00 74.34 47.35 24.78 4.77 0.00 9.04 0.00 0.00 0.00 0.00 65 ER11b ExonRegion 0 0.84 0.25 11.88 1.82 35.58 48.81 19.80 14.58 28.17 48.33 10.07 21.74 0.71 55.26 40.15 23.60 15.15 0.23 8.98 0.52 0.00 0.00 0.00 66 E11_Db NovelBoundary 0 3.78 0.00 2.57 1.47 14.52 37.19 9.49 11.42 3.94 13.62 6.95 6.15 0.00 16.48 24.72 15.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER11c ExonRegion 0 2.12 0.00 1.84 1.27 9.94 17.29 4.82 5.43 1.41 8.52 1.52 3.09 0.00 11.83 10.36 7.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER11d ExonRegion 0 1.54 0.00 0.45 0.00 0.00 0.33 0.00 0.79 0.00 0.63 0.00 0.00 0.00 1.33 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 I11_AR1 ActiveIntronRegion 0 13.52 43.45 21.74 10.11 19.87 27.14 12.45 14.14 18.93 28.42 11.63 5.02 0.00 11.62 23.37 10.11 5.24 14.76 10.06 12.33 20.66 9.87 7.86 70 I11_SR2 SilentIntronRegion 0 3.08 23.31 5.23 3.98 4.53 11.52 3.05 5.23 5.73 16.12 4.78 1.14 0.00 10.63 8.80 4.22 4.99 14.13 2.92 13.47 9.05 9.94 2.43 71 I11_AR2 ActiveIntronRegion 0 1.38 6.13 6.01 1.85 0.59 11.54 3.46 5.05 7.20 13.95 5.14 0.86 0.00 9.54 8.68 4.72 1.84 13.50 2.60 9.35 13.70 3.05 2.55 72 I11_SR1 SilentIntronRegion 0 4.21 3.98 5.13 2.15 8.18 3.91 11.12 6.41 5.80 6.28 3.80 33.53 1.00 18.67 12.03 9.90 5.79 3.74 2.99 8.10 1.11 0.29 1.12 73 I11_AR1 ActiveIntronRegion 0 4.63 4.99 3.15 2.63 8.23 4.19 14.05 10.90 6.93 7.89 4.20 17.80 1.15 14.49 8.32 13.16 5.10 7.75 4.23 11.65 1.23 0.30 2.04 74 ER12a ExonRegion 0 0.00 0.00 0.00 0.39 0.00 1.06 0.38 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.76 0.00 0.00 75 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 76 ER13a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00