Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IDI1 Gene 0 36.19 44.33 27.85 18.46 48.96 44.26 49.26 58.69 50.27 49.37 249.89 79.05 135.55 132.88 146.24 220.70 183.52 89.09 30.05 86.30 59.22 109.77 61.91 2 381344 Transcript 0 9.78 9.94 7.87 6.75 8.83 8.22 6.51 16.84 11.44 8.43 19.19 9.15 18.01 13.73 32.90 18.14 11.88 11.44 9.57 15.37 7.03 21.81 11.37 3 491735 Transcript 1 62.90 146.49 4.35 9.22 75.21 92.28 133.15 41.81 37.38 35.83 461.54 12.15 12.99 128.73 171.83 491.92 310.24 310.65 39.81 144.39 44.23 64.23 142.47 4 482091 Transcript 0 41.66 23.63 16.69 6.32 24.07 14.44 13.89 22.66 18.15 11.95 39.64 12.36 20.80 24.58 22.67 51.46 25.13 29.77 5.97 24.13 24.50 28.16 23.59 5 429642 Transcript 0 1.07 1.31 4.92 0.66 3.19 4.92 3.35 7.55 10.85 5.67 24.32 4.44 7.26 13.34 13.72 17.92 23.98 32.31 5.15 23.86 25.48 12.02 13.08 6 427898 Transcript 0 4.09 5.78 4.55 1.33 7.14 2.51 8.14 9.02 7.25 4.17 10.36 5.27 24.04 13.38 11.03 17.02 13.96 7.30 2.57 5.73 9.81 10.59 9.66 7 ER1a ExonRegion 0 2.68 3.05 2.94 3.41 4.01 6.53 1.03 5.16 2.16 3.02 12.39 0.00 0.00 12.20 18.60 10.58 6.55 15.03 16.86 16.27 9.75 15.78 16.93 8 E1_Ab KnownBoundary 0 10.08 0.00 4.61 11.45 0.00 13.74 9.98 8.71 5.84 4.89 20.22 0.00 0.00 26.55 26.70 17.77 4.77 32.29 31.25 14.45 13.10 19.78 26.38 9 ER1b ExonRegion 0 0.88 2.22 2.92 2.32 3.25 6.10 5.17 8.15 5.88 7.79 25.14 0.00 0.00 19.28 13.90 21.94 10.30 20.84 6.71 10.52 12.29 7.37 12.73 10 E1_Ac KnownBoundary 0 0.00 8.35 2.93 0.00 0.00 5.00 5.96 4.81 5.93 8.89 61.44 0.00 0.00 7.30 0.00 30.93 3.74 8.37 0.00 22.63 11.24 11.70 0.00 11 ER1c ExonRegion 0 2.44 8.92 2.54 1.07 2.73 11.21 5.68 9.51 6.86 12.11 41.71 0.00 0.00 38.57 25.39 36.07 12.31 15.42 5.70 24.26 14.66 12.38 12.20 12 E1_Da NovelBoundary 0 0.00 2.70 0.00 0.00 4.16 4.83 11.39 4.35 6.05 5.59 21.32 0.00 0.00 7.42 18.67 22.13 22.72 47.55 7.72 22.56 21.31 5.14 18.52 13 E1a_E2a KnownJunction 1 92.68 109.91 28.21 17.88 148.47 148.04 225.94 62.76 77.95 97.51 1297.70 6.45 58.11 417.98 1099.58 1992.90 1193.92 263.68 285.94 434.57 217.77 624.28 421.10 14 E1a_E2b KnownJunction 1 62.90 146.49 4.35 9.22 75.21 92.28 133.15 41.81 37.38 35.83 461.54 12.15 12.99 128.73 171.83 491.92 310.24 310.65 39.81 144.39 44.23 64.23 142.47 15 ER1d ExonRegion 1 70.29 138.07 23.28 18.58 123.51 147.38 193.23 77.78 86.26 91.87 1065.94 6.61 14.56 328.84 652.78 1466.67 911.39 443.36 194.14 353.64 178.27 361.44 348.84 16 ER1e ExonRegion 0 2.14 2.62 4.19 1.32 2.05 6.93 6.70 12.71 12.73 9.67 39.10 2.73 14.52 26.68 27.43 31.64 43.38 62.63 10.31 36.35 50.97 17.92 26.15 17 E1_Ae KnownBoundary 0 3.19 0.00 12.39 3.56 0.00 0.00 4.28 22.71 29.14 7.68 82.34 5.55 20.45 48.50 25.84 39.05 85.93 88.83 17.79 84.24 67.65 39.43 27.32 18 ER1f ExonRegion 0 3.87 3.36 7.72 3.05 4.55 13.00 10.73 17.86 23.38 15.53 61.61 15.56 38.90 45.88 44.30 58.06 61.90 65.24 15.57 55.83 58.90 36.67 45.55 19 E1_Db NovelBoundary 1 0.00 16.12 7.48 4.30 8.66 13.12 13.20 37.91 28.47 18.32 83.86 19.66 110.38 48.97 49.94 67.85 64.52 113.50 11.29 47.36 50.53 19.78 68.97 20 E1b_E2a KnownJunction 0 0.00 0.00 5.65 0.00 4.33 2.90 0.00 2.38 8.97 1.67 9.53 6.15 0.00 0.00 0.00 4.19 4.58 1.99 0.00 11.38 0.00 6.12 0.00 21 E1b_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 7.21 0.00 0.00 0.00 0.00 0.00 22 I1 Intron 0 13.53 9.64 11.14 5.78 20.74 18.15 17.74 20.60 19.58 12.54 60.25 27.36 58.80 39.35 25.87 50.74 41.51 43.76 8.41 29.56 45.77 40.46 33.54 23 I1_AR1 ActiveIntronRegion 1 7.19 4.34 3.88 2.03 6.51 6.23 10.57 4.30 10.60 4.07 63.06 15.52 75.75 40.73 46.75 65.22 38.24 22.00 23.86 35.53 35.88 32.04 26.21 24 I1_SR1 SilentIntronRegion 0 10.05 5.38 6.91 2.62 16.77 14.70 14.76 10.03 14.41 8.38 44.68 29.11 57.16 28.97 21.33 31.00 27.84 17.21 7.80 25.49 24.62 40.54 17.13 25 I1_AR2 ActiveIntronRegion 0 18.80 15.83 17.49 10.34 27.50 23.98 22.46 36.24 27.37 18.93 80.64 26.40 59.40 52.98 29.76 75.36 59.95 81.04 7.63 34.40 74.75 41.38 55.98 26 E2_Aa NovelBoundary 0 43.93 32.95 29.12 6.16 64.18 36.68 37.32 54.09 32.15 26.92 47.17 45.46 60.22 58.98 30.16 61.52 37.77 63.01 7.72 62.13 34.72 80.15 44.13 27 ER2a ExonRegion 1 28.80 49.73 46.24 24.18 67.31 59.92 82.00 94.05 104.29 107.74 939.24 99.80 73.93 211.26 394.94 876.19 860.29 177.88 124.93 280.78 155.60 331.66 194.62 28 E2_Da KnownBoundary 0 13.48 0.00 11.00 0.00 0.00 0.00 0.00 9.32 8.19 1.67 9.90 10.95 11.36 9.48 62.55 60.58 0.00 9.08 4.80 9.08 14.02 41.70 18.78 29 E2a_E2b KnownJunction 1 13.71 41.18 109.43 53.47 52.21 27.71 39.92 151.52 182.75 196.71 897.86 349.31 194.95 682.09 1198.84 2627.60 776.81 364.50 442.18 625.69 167.29 1098.41 666.60 30 ER2b ExonRegion 0 41.66 23.63 16.69 6.32 24.07 14.44 13.89 22.66 18.15 11.95 39.64 12.36 20.80 24.58 22.67 51.46 25.13 29.77 5.97 24.13 24.50 28.16 23.59 31 E2_Ab KnownBoundary 0 172.48 73.93 55.14 29.70 100.51 51.39 57.54 96.98 65.19 47.84 94.55 44.86 91.55 66.87 53.40 162.95 81.72 79.80 25.79 78.11 40.09 65.27 44.90 32 ER2c ExonRegion 1 171.32 198.19 118.93 69.82 279.44 208.44 226.99 241.61 213.76 204.24 1149.78 295.82 413.08 620.63 783.15 1934.14 779.01 676.92 194.97 464.75 286.94 573.87 474.01 33 E2_Db NovelBoundary 0 10.52 6.12 14.46 8.99 15.70 5.79 6.27 17.58 12.93 12.84 22.90 0.00 40.09 9.89 4.45 13.07 21.22 2.16 0.00 5.56 5.37 20.76 4.27 34 E2b_E3a KnownJunction 0 152.25 148.39 104.88 58.43 454.24 273.99 308.26 207.26 180.03 181.61 1200.62 303.10 601.26 543.65 515.73 597.88 760.07 288.68 82.83 279.64 416.07 294.10 150.32 35 E3_Aa NovelBoundary 0 31.26 61.17 46.86 23.81 153.40 119.65 132.58 96.48 75.61 77.63 328.71 60.62 134.57 111.07 53.77 190.72 277.14 122.20 24.19 111.92 142.77 76.66 50.88 36 ER3a ExonRegion 0 88.60 200.17 106.99 63.47 234.25 254.51 297.28 215.17 205.29 207.82 1297.65 343.39 440.15 681.37 531.00 689.98 1000.29 435.60 108.78 409.20 420.45 292.52 208.47 37 E3_Da KnownBoundary 0 97.35 232.06 144.76 78.98 102.89 147.70 148.78 288.01 218.66 233.48 1046.53 477.46 426.76 801.76 700.79 1020.07 885.65 746.12 98.64 518.75 346.26 326.56 306.28 38 ER3b ExonRegion 0 90.16 184.65 127.49 77.90 141.34 110.31 121.25 285.43 225.15 240.03 1173.01 446.99 605.12 796.36 679.47 1286.60 888.16 757.91 101.65 433.24 389.62 427.40 341.69 39 E3_Db KnownBoundary 0 19.48 19.80 23.68 5.59 4.16 2.90 17.97 37.17 22.60 16.84 49.49 12.00 48.37 44.26 53.03 63.32 32.16 15.92 14.40 15.15 28.97 16.10 11.44 40 E3b_E4a KnownJunction 0 115.80 169.31 112.00 88.43 204.58 125.50 138.58 241.35 222.63 240.98 1240.52 290.94 834.36 594.74 512.02 1288.89 872.65 643.15 136.19 390.09 383.39 465.86 272.91 41 ER3c ExonRegion 1 8.19 11.56 9.09 2.66 14.28 5.02 16.27 18.03 12.95 8.33 20.73 10.54 48.09 26.77 22.06 29.94 27.92 7.39 5.14 11.46 19.62 21.19 19.32 42 E3_Dc NovelBoundary 0 44.67 10.66 13.72 6.19 40.92 40.49 53.22 39.31 12.59 26.38 44.64 6.30 34.41 14.30 4.45 63.74 37.59 24.66 12.24 17.39 12.85 31.90 48.14 43 Ix Intron 0 9.51 7.52 9.17 3.22 14.85 5.81 16.44 20.42 9.24 9.48 16.86 9.42 42.06 21.36 19.75 24.35 2.62 7.31 4.19 11.24 6.38 18.72 8.54 44 Ix_AR1 ActiveIntronRegion 0 9.61 7.60 9.26 3.25 15.00 5.88 16.62 20.62 9.33 9.58 17.03 9.52 42.48 21.58 19.94 24.60 2.64 7.39 4.24 11.36 6.45 18.90 8.63 45 Ix Intron 0 16.81 6.09 6.73 2.57 11.40 4.64 13.11 14.53 9.11 7.08 8.67 10.03 29.73 15.27 12.12 13.69 8.74 3.18 1.47 8.81 3.81 13.71 8.11 46 Ix_AR2 ActiveIntronRegion 0 28.53 8.84 10.11 4.75 19.43 7.45 25.69 23.44 11.88 9.68 14.29 11.18 40.49 17.63 16.37 16.91 10.85 3.54 2.49 14.67 2.29 18.48 9.78 47 E4_Aa NovelBoundary 0 13.11 2.96 16.00 10.79 23.17 10.16 38.07 12.73 12.90 4.06 19.16 24.31 57.79 19.07 13.35 15.30 25.81 3.52 0.00 28.95 2.84 16.84 3.16 48 ER4a ExonRegion 0 85.43 115.28 63.45 50.73 128.92 122.23 132.17 141.47 116.39 131.09 595.76 265.02 508.21 374.83 348.30 381.15 380.20 127.88 58.02 163.63 76.83 282.09 101.50 49 E4_Da KnownBoundary 0 41.19 13.62 52.07 36.63 23.94 2.90 0.00 55.45 40.05 3.71 25.06 6.90 40.58 0.00 22.62 23.93 8.98 10.16 0.00 5.69 8.65 5.39 11.61 50 ER4b ExonRegion 0 16.89 16.82 12.81 10.09 13.66 9.92 11.98 28.53 20.71 13.84 25.99 18.29 36.02 15.26 47.21 25.70 17.21 7.86 2.27 14.47 4.31 27.83 5.82