Summary page for comparison: 'NBL13_Rel_Left_vs_NBL13_Rel_Right' (HS1151_vs_HS1040) - Project: NeuroEvolution


Download complete candidate list as tab delimited text file: NBL13_Rel_Left_vs_NBL13_Rel_Right.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 6,994 (of 49,867 possible genes)

DE Genes: 900

AE Genes: 6,375

Alternative Exon Usage (EU) Genes: 5,119

Alernative Exon Skipping (ES) Genes: 1,069

Alternative Exon Boundary (AB) Genes: 2,621

Intron Retention (IR) Genes: 66

Cryptic Exon (CE) Genes: 330


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1113.52IGKV3-11'IG_V_gene'12DEGain11717.750N/AIGKV3-11N/A
2213.27IGLV2-23'IG_V_gene'24DELoss-9862.900N/AIGLV2-23N/A
3312.77IGHV3-53'IG_V_gene'12DEGain6999.420N/AIGHV3-53N/A
4412.59EEF1A1'protein_coding'1131AEGain240.218EU ER6a14.29
5511.72RPS25'protein_coding'15AELoss-85.233EU E2a_E3a50.00
6611.16IGHV4-61'IG_V_gene'12DELoss-2288.740N/AIGHV4-61N/A
7711.01VDAC2'protein_coding'1336AEGain100.4011EU ES AB ER11b50.00
8810.85BCRL4'protein_coding'211AEGain12.5210EU AB IR E4_Da50.00
9910.79D87024.1'miRNA'11DELoss-1773.000N/AD87024.1N/A
101010.76IGLV2-5'pseudogene'11DELoss-1739.800N/AIGLV2-5N/A
111110.53HNRNPA3'protein_coding'1137AEGain141.298EU ES AB ER3b75.00
12129.72BZW1'protein_coding'1847AEGain73.319EU ES AB ER14c50.00
13139.44PARP1'protein_coding'1042AEGain30.133EU AB ER24c100.00
14148.62IGHV4-31'IG_V_gene'12DELoss-392.630N/AIGHV4-31N/A
15158.57IGHV4-4'IG_V_gene'12DELoss-380.930N/AIGHV4-4N/A
16168.33RNASEK'protein_coding'24AEGain34.992EU CE I2_AR10
17178.05AC096663.2'pseudogene'24AEGain96.263EU AB E1_Da0
18187.91RPS10'protein_coding'714AELoss-14.305EU E6a_E7a75.00
19197.80TEX261'protein_coding'821AELoss-18.472EU ES ER1f100.00
20207.53DDX41'protein_coding'117AELoss-26.971EU E2a_E3a0
21217.49ALPL'protein_coding'622DELoss-179.990N/AALPLN/A
22227.49PRRX1'protein_coding'714DELoss-179.510N/APRRX1N/A
23237.18IGHV4-39'IG_V_gene'12DELoss-145.130N/AIGHV4-39N/A
24247.17LHX2'protein_coding'311DELoss-143.580N/ALHX2N/A
25257.14KIFC1'protein_coding'519AELoss-26.624EU AB E4_Da0
26267.09RPS27'protein_coding'410AELoss-23.471EU E2a_E2b0
27277.00NEDD9'protein_coding'1021AELoss-15.532EU ES E8a_E12a100.00
28286.94MGEA5'protein_coding'1340AEGain23.834EU ES AB ER17d0.00
29296.92FAM110A'protein_coding'47AELoss-13.462AB E3_Da0
30306.87UCRC'protein_coding'410AELoss-14.918EU ES AB E1b_E2a80.00
31316.82UBE2V1'protein_coding'2142AELoss-12.959EU AB ER14b66.67
32326.73RP11-325F22.2'processed_transcript'13DELoss-106.400N/ARP11-325F22.2N/A
33336.73NME1'protein_coding'923AEGain12.103EU AB ER4b0.00
34346.67HMGN1'protein_coding'2146AEGain21.5510EU AB ER5j60.00
35356.66PLS3'protein_coding'1039DELoss-101.030N/APLS3N/A
36366.65EMD'protein_coding'923AELoss-19.372EU AB E4_Dh0
37376.65MYCBP2'protein_coding'12118AEGain13.804EU ES AB E60_Da0.00
38386.57C6orf62'protein_coding'39AELoss-17.341AB E1_Da0
39396.51WFDC2'protein_coding'813DELoss-91.270N/AWFDC2N/A
40406.50AHCTF1'protein_coding'1153AEGain14.207EU ES E28a_E29a0.00
41416.42ATG4B'protein_coding'2970AELoss-14.048EU ES AB E4a_E4c25.00
42426.38RP11-295P9.2'protein_coding'515AELoss-16.774AB IR E9_Da0
43436.37PSMC1'protein_coding'111AEGain18.735EU E7a_E8a50.00
44446.37SEPT9'protein_coding'923AEGain11.744EU ES E5a_E8c33.33
45456.35ATG9A'protein_coding'2273AEGain17.972EU AB E16_Dc0
46466.32XXbac-BPG246D15.6'processed_transcript'614AELoss-14.343ES AB E1a_E2a100.00
47476.32AC116353.1'protein_coding'224AELoss-17.007EU E2a_E3a66.67
48486.31SLC10A2'protein_coding'16DELoss-79.500N/ASLC10A2N/A
49496.29SH3GL2'protein_coding'317DELoss-78.220N/ASH3GL2N/A
50506.24TOMM7'protein_coding'714AELoss-13.021ES E1a_E3b0
51516.22CHI3L2'protein_coding'1229DEGain74.800N/ACHI3L2N/A
52526.13ATG12'protein_coding'26AELoss-15.543EU AB E1_Da0
53536.13STRA13'protein_coding'38AELoss-9.593EU E3a_E4a100.00
54546.10ANP32E'protein_coding'716AEGain11.801EU ER8c0
55556.08EIF4G2'protein_coding'426AEGain16.004EU ES E1a_E4a0.00
56566.06EIF2S2'protein_coding'19AELoss-7.745EU E1a_E2a75.00
57576.05TMEM199'protein_coding'312AEGain17.843EU ER3b50.00
58586.02RPL29'protein_coding'917AELoss-6.962EU ES E2b_E3a100.00
59596.02COMMD3'protein_coding'2140AELoss-10.567EU ES AB E1a_E4b25.00
60605.98SNRPC'protein_coding'411AEGain8.845EU ES E1a_E3a50.00
61615.98MRFAP1'protein_coding'38AELoss-30.632EU AB E1_Ad0
62625.97C20orf199'processed_transcript'810AELoss-10.315EU ES E2a_E6a75.00
63635.97ELMO1'protein_coding'2463AEGain11.532EU ER1g0.00
64645.95ACAD8'protein_coding'211AELoss-14.083EU E1a_E2a0.00
65655.88PITPNM1'protein_coding'225AELoss-12.841EU E1a_E2a0
66665.87VPS33A'protein_coding'113AELoss-13.333EU E1a_E2a50.00
67675.85MRPL27'protein_coding'37AEGain9.623EU AB E4_Da100.00
68685.84AIM2'protein_coding'417AELoss-8.972EU E10c_E11a100.00
69695.84ZRANB2'protein_coding'621AELoss-12.335EU E2a_E3a25.00
70705.82TCF12'protein_coding'527AELoss-39.045EU AB ENST0000034382766.67
71715.76RBBP9'protein_coding'412AELoss-28.663EU E1a_E2a100.00
72725.76WRB'protein_coding'1835AELoss-11.762EU ES E1a_E4a100.00
73735.76ZFAND1'protein_coding'18AELoss-9.162EU ER3a100.00
74745.74PARL'protein_coding'1026AELoss-15.392EU E1b_E2a100.00
75755.74UTS2'protein_coding'414AELoss-9.534EU AB E2a_E3a100.00
76765.73TFEB'protein_coding'2038AEGain10.804EU AB E17_Da0.00
77775.73RPL7'protein_coding'926AELoss-2.823EU AB E7a_E8a0.00
78785.72TLK2'protein_coding'323AELoss-13.704EU E10a_E11a33.33
79795.71NGFRAP1'protein_coding'511DELoss-52.490N/ANGFRAP1N/A
80805.71FKBP1A'protein_coding'922AEGain11.931AB E7_Db0
81815.70LANCL1'protein_coding'1033AEGain6.333EU ER2d50.00
82825.69PLCXD1'protein_coding'924AEGain8.524EU ES AB ER9c50.00
83835.69RPS21'protein_coding'819AEGain8.728EU AB ER3i33.33
84845.69BHLHE22'protein_coding'11DELoss-51.580N/ABHLHE22N/A
85855.69INPP5B'protein_coding'1342AELoss-11.833EU ER2c50.00
86865.68KIN'protein_coding'521AELoss-12.102EU E1a_E2a0.00
87875.66RAB8B'protein_coding'211AEGain8.045EU AB E3_Da33.33
88885.65RP4-564F22.1'protein_coding'1129AELoss-10.403EU ES AB E1a_E2a0.00
89895.65AC018737.4'processed_transcript'513AELoss-11.532EU AB E2_Ad0
90905.64FAM118A'protein_coding'1847AELoss-9.401ES E4a_E7a0
91915.64NUDT16L1'protein_coding'25AELoss-9.871EU E1a_E2a0
92925.63CRNKL1'protein_coding'723AELoss-28.131EU E2e_E3a0
93935.62CDK5RAP3'protein_coding'114AEGain26.791AB E2_Aa0
94945.61DPH5'protein_coding'2054AEGain11.638EU ES AB ER18c25.00
95955.61DALRD3'protein_coding'1641AELoss-9.684EU AB E3a_E3g0.00
96965.61C11orf9'protein_coding'438DELoss-48.740N/AC11orf9N/A
97975.60CYP27A1'protein_coding'519DELoss-48.340N/ACYP27A1N/A
98985.59RPL39'protein_coding'48AELoss-9.131ES E1c_E3a0
99995.59TATDN1'protein_coding'112AEGain6.623EU I1_SR1100.00
1001005.58HLA-DQB1'protein_coding'919AELoss-8.273EU E2b_E3a100.00
1011015.57STYXL1'protein_coding'1635AELoss-9.623EU E1a_E2a50.00
1021025.57LUC7L'protein_coding'2148AELoss-11.718EU ES AB E1a_E1q66.67
1031035.57DBNL'protein_coding'2764AELoss-7.427EU AB E2_Da50.00
1041045.49SRC'protein_coding'1438AELoss-10.275EU ES E1a_E3a50.00
1051055.49SLC5A6'protein_coding'1956AELoss-8.715EU ES AB CE E3_Aa100.00
1061065.49FOXG1B'protein_coding'23DELoss-44.820N/AFOXG1BN/A
1071075.48CCDC58'protein_coding'717AEGain7.874EU AB E8_Dd100.00
1081085.47WDR45'protein_coding'3074AELoss-9.376EU AB E4a_E5a25.00
1091095.46SNX13'protein_coding'1658AELoss-10.196EU AB E1_Da0.00
1101105.44TMEM41B'protein_coding'29AEGain10.122CE I4_AR20
1111115.44ZNF581'protein_coding'12AELoss-7.651EU E1a_E2a0
1121125.43SRP9'protein_coding'410AEGain9.604EU ES ENST0000030478666.67
1131135.43RPL18A'protein_coding'27AEGain46.982EU E2a_E3a100.00
1141145.41RAB4A'protein_coding'518AEGain11.292EU ER1b0.00
1151155.40HELZ'protein_coding'133AELoss-20.982EU E3a_E4a100.00
1161165.39BIN3'protein_coding'211AELoss-6.983EU E4a_E5a100.00
1171175.39INTS4'protein_coding'227AEGain7.991AB E25_Da0
1181185.39ECHDC3'protein_coding'614AELoss-8.001AB E1_Ac0
1191195.38FAM21C'protein_coding'945AEGain22.975EU ER6b0.00
1201205.38ISCA1'protein_coding'512AELoss-11.353EU ES E1a_E3a0.00
1211215.38SOX5'protein_coding'521DELoss-41.660N/ASOX5N/A
1221225.38MTMR2'protein_coding'1545AEGain8.551EU ER3c0
1231235.37NLRP2'protein_coding'415DELoss-41.390N/ANLRP2N/A
1241245.37UGT2B17'protein_coding'16DELoss-41.330N/AUGT2B17N/A
1251255.37FAM3C'protein_coding'724AEGain23.356EU AB ER10c50.00
1261265.36DCI'protein_coding'17AEGain8.781AB E1_Da0
1271275.36CD79B'protein_coding'37AELoss-7.975EU E1a_E2b100.00
1281285.36CCDC117'protein_coding'718AELoss-14.564EU AB E1_Db100.00
1291295.35KIAA0748'protein_coding'315AELoss-25.114EU ES E1a_E3a66.67
1301305.34MRPL10'protein_coding'718AEGain8.0611EU ES AB E1a_E2b75.00
1311315.33QRICH1'protein_coding'1438AELoss-10.156EU ES AB E1c_E4a33.33
1321325.33SNORA43'processed_transcript'410AELoss-10.733AB E5_Aa0
1331335.33C20orf103'protein_coding'27DEGain40.300N/AC20orf103N/A
1341345.33RPS15'protein_coding'14AELoss-9.651EU E3a_E4a0
1351355.33PES1'protein_coding'1344AELoss-8.112EU E6a_E7a100.00
1361365.33IQGAP2'protein_coding'237DEGain40.110N/AIQGAP2N/A
1371375.32CNOT4'protein_coding'1236AELoss-9.584EU AB CE E1_Af0.00
1381385.30CKS2'protein_coding'13AELoss-9.641EU E1a_E2a0
1391395.29C1orf38'protein_coding'1223AEGain17.488EU E2a_E3a71.43
1401405.29NDUFA3'protein_coding'1736AELoss-19.1910EU ES AB E4a_E4c71.43
1411415.29HNF1B'protein_coding'313DELoss-39.140N/AHNF1BN/A
1421425.28PPAN'protein_coding'1033AEGain21.916EU AB ER4a0.00
1431435.26TNFSF10'protein_coding'820AELoss-7.383EU AB E1_Ag0.00
1441445.25NUBP1'protein_coding'212AELoss-10.921EU E2a_E3a0
1451455.25TMPO'protein_coding'411AEGain8.732EU AB ER1a0
1461465.24YY1AP1'protein_coding'2650AEGain19.215EU AB CE ER14f0.00
1471475.23RPS7'protein_coding'922AELoss-11.217EU E2e_E2f50.00
1481485.22STX16'protein_coding'2455AELoss-5.525EU AB E1_Db100.00
1491495.21TMEM183A'protein_coding'516AEGain7.727EU ES ER7b50.00
1501505.21AC010619.2'protein_coding'15AELoss-9.642EU E2a_E3a0.00
1511515.20TMEM161A'protein_coding'212AELoss-9.321EU E2a_E3a0
1521525.19WDR42A'protein_coding'1751AELoss-10.664EU AB E1b_E2b0
1531535.19RP11-457L23.1'pseudogene'11DELoss-36.420N/ARP11-457L23.1N/A
1541545.18DHFRL1'protein_coding'512AELoss-6.894EU AB E3_Da100.00
1551555.18MAT2A'protein_coding'1439AELoss-6.363EU ER1g0.00
1561565.16SARNP'protein_coding'214AELoss-9.863EU E2a_E3a50.00
1571575.15PPP2R5C'protein_coding'620AELoss-8.292EU AB E4a_E5a0
1581585.14EBF1'protein_coding'219AEGain7.843EU CE I6_AR210
1591595.14CORO1B'protein_coding'416AELoss-8.813EU AB E1_Da0
1601605.14PI4KAP1'processed_transcript'834AELoss-8.053EU CE I3_AR20.00
1611615.13ERH'protein_coding'14AEGain7.582EU E3a_E4a0.00
1621625.12UBR7'protein_coding'211AELoss-8.251EU E1a_E2a0
1631635.11MAP7D2'protein_coding'832DELoss-34.580N/AMAP7D2N/A
1641645.11FRAS1'protein_coding'584DELoss-34.530N/AFRAS1N/A
1651655.11ODZ3'protein_coding'127DELoss-34.440N/AODZ3N/A
1661665.10RPL31'protein_coding'1122AELoss-5.665EU AB E1b_E2a33.33
1671675.10SUCNR1'protein_coding'13DELoss-34.230N/ASUCNR1N/A
1681685.10DAP3'protein_coding'2454AELoss-6.288EU AB E3a_E4a0.00
1691695.10RANBP2'protein_coding'1149AEGain7.497EU AB CE I9_AR20.00
1701705.09NCRNA00081'processed_transcript'819AELoss-17.323EU ES AB E2a_E4a0.00
1711715.09ATL2'protein_coding'1744AEGain7.855EU AB IR ER18d0
1721725.09TTC31'protein_coding'1750AELoss-9.133EU E2a_E3a0.00
1731735.09THOC2'protein_coding'2387AELoss-18.1510EU AB E2a_E3a62.50
1741745.09MTX1'protein_coding'619AELoss-8.257EU ES AB E6_Da50.00
1751755.09BTN2A3'protein_coding'721AEGain9.143EU ER2a50.00
1761765.09CD52'protein_coding'36AELoss-20.842ES AB E1a_E3a0
1771775.08ATG16L1'protein_coding'2060AELoss-6.505EU AB E5_Aa50.00
1781785.08RSBN1'protein_coding'414AEGain7.881AB E1_Ae0
1791795.06AC005083.1'processed_transcript'514AEGain7.321AB E1_Da0
1801805.06MRPL20'protein_coding'614AELoss-6.275EU AB CE E1a_E2a100.00
1811815.05IDH1'protein_coding'1338AELoss-8.135EU ES AB E3b_E5d66.67
1821825.05RPL11'protein_coding'511AELoss-9.471EU E3a_E4a0
1831835.04PHF11'protein_coding'2044AELoss-7.334EU ES AB E1a_E4a0.00
1841845.04RPL10'protein_coding'1939AEGain23.6911EU AB E6b_E6d55.56
1851855.04IGLV2-14'IG_V_gene'12DELoss-32.850N/AIGLV2-14N/A
1861865.04NPY'protein_coding'39DELoss-32.790N/ANPYN/A
1871875.03NOMO1'protein_coding'234AEGain9.305EU ER25a0.00
1881885.03TNFRSF8'protein_coding'519DELoss-32.670N/ATNFRSF8N/A
1891895.03C15orf57'protein_coding'37AELoss-6.451AB E3_Da0
1901905.03COL4A5'protein_coding'762DELoss-32.560N/ACOL4A5N/A
1911915.02TYW1'protein_coding'1236AEGain6.437EU AB E19_Db75.00
1921925.01GGA2'protein_coding'117AELoss-6.792EU E1a_E2a0.00
1931935.00KIAA0125'protein_coding'825DEGain32.080N/AKIAA0125N/A
1941945.00CHDH'protein_coding'313DELoss-32.010N/ACHDHN/A
1951955.00EIF4E'protein_coding'310AELoss-21.297EU ES AB E4a_E5a50.00
1961964.99LRCH3'protein_coding'1958AELoss-9.054ES AB CE E13_Aa0
1971974.99SLCO4A1'protein_coding'1137AEGain10.633EU AB E1_Ab100.00
1981984.98RAB31'protein_coding'29DEGain31.590N/ARAB31N/A
1991994.98RPS13'protein_coding'16AELoss-5.372EU E3a_E4a100.00
2002004.97C6orf129'protein_coding'37AELoss-10.823EU AB E2a_E3a100.00
2012014.97C10orf54'protein_coding'415AELoss-7.562EU AB E1a_E2a0
2022024.97HN1'protein_coding'1224AELoss-7.483EU ES ER4a0.00
2032034.97NDUFB7'protein_coding'13AELoss-8.661EU E1a_E2a0
2042044.96C7orf70'protein_coding'12AEGain8.271EU E1a_E2a0
2052054.96WBSCR16'protein_coding'417AEGain9.052EU ER9a0.00
2062064.96AC100786.1'protein_coding'26AELoss-8.862EU E3a_E4a100.00
2072074.96TNFRSF11B'protein_coding'15DELoss-31.150N/ATNFRSF11BN/A
2082084.96GSTM4'protein_coding'1537AELoss-5.318EU AB E1_Ag50.00
2092094.96C9orf6'protein_coding'513AELoss-5.902EU ER1d100.00
2102104.96CCL22'protein_coding'13DELoss-31.022EU CCL220.00
2112114.95ACIN1'protein_coding'627AELoss-9.426EU ES E1a_E2a50.00
2122124.94PTTG1IP'protein_coding'820AEGain8.908EU ES AB E9_Da25.00
2132134.94CADM1'protein_coding'314DELoss-30.770N/ACADM1N/A
2142144.93FXYD2'protein_coding'38DELoss-30.460N/AFXYD2N/A
2152154.92RPL3'protein_coding'2248AELoss-8.698EU ES AB E4e_E6c0.00
2162164.92IL17RB'protein_coding'316DELoss-30.2314EU ES AB IR IL17RB25.00
2172174.91KIAA1191'protein_coding'410AELoss-9.502EU ES E1a_E2a0.00
2182184.90CRCP'protein_coding'922AEGain16.423EU ES ER10d0.00
2192194.89TASP1'protein_coding'822AELoss-8.131AB E2_Ab0
2202204.89CYBA'protein_coding'16AELoss-6.423EU E2a_E3a50.00
2212214.89RNF123'protein_coding'1580AEGain18.1711EU AB ER33c50.00
2222224.88BTN3A2'protein_coding'315AELoss-6.452EU ER2a100.00
2232234.88DGKZ'protein_coding'639AEGain9.3912EU ES AB ER20a40.00
2242244.87ACSL3'protein_coding'934AELoss-6.436EU ES AB E4a_E5a50.00
2252254.87PTPRK'protein_coding'2069DELoss-29.150N/APTPRKN/A
2262264.86TAF12'protein_coding'412AELoss-6.173EU AB E9_Aa100.00
2272274.86CELSR1'protein_coding'744DELoss-29.070N/ACELSR1N/A
2282284.86PSMB8'protein_coding'513AELoss-9.211EU E2a_E3a0
2292294.85TMEM111'protein_coding'517AELoss-8.762AB E2_Ad0
2302304.84PBK'protein_coding'18AELoss-9.163EU E1a_E2a50.00
2312314.84C14orf105'protein_coding'29DELoss-28.620N/AC14orf105N/A
2322324.84TRAPPC3'protein_coding'819AELoss-7.784EU ES AB E1a_E2b0.00
2332334.84DUS2L'protein_coding'219AELoss-8.171EU E2a_E3a0
2342344.84LMNA'protein_coding'2162AELoss-7.062AB E7_Da0
2352354.83SUV39H1'protein_coding'731AELoss-8.0810EU AB ER3c40.00
2362364.83POLR2I'protein_coding'16AELoss-6.514EU AB E2_Aa50.00
2372374.82COPS7B'protein_coding'2247AELoss-6.494EU AB CE I10_AR1100.00
2382384.82RPL24'protein_coding'616AELoss-5.134EU AB E2_Ab0.00
2392394.82ANAPC1'protein_coding'1170AEGain6.226EU AB ER43a0.00
2402404.81IGHMBP2'protein_coding'115AELoss-8.002EU CE I8_AR40
2412414.81RAB9A'protein_coding'25AELoss-21.323EU ES E1a_E2a50.00
2422424.81PSMB9'protein_coding'720AELoss-6.662EU E4a_E4c100.00
2432434.80PRAF2'protein_coding'37AELoss-6.591EU ER1c0
2442444.80ROBO1'protein_coding'1664DELoss-27.790N/AROBO1N/A
2452454.80NLE1'protein_coding'626AELoss-9.312EU E1b_E2a100.00
2462464.79C19orf42'protein_coding'920AELoss-8.424ES AB E4a_E9a0.00
2472474.79PGS1'protein_coding'315AELoss-15.691EU E1a_E2a0
2482484.79KAT5'protein_coding'315AELoss-7.023EU E2a_E3a50.00
2492494.79KIAA0913'protein_coding'1552AELoss-7.151AB E21_Da0
2502504.79TP53TG1'processed_transcript'510AELoss-5.892EU E1a_E1c0.00
2512514.78TCEB2'protein_coding'410AELoss-9.392ES E2a_E4a100.00


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1412.59EEF1A1'protein_coding'1131AEGain240.218EU ER6a14.29
2511.72RPS25'protein_coding'15AELoss-85.233EU E2a_E3a50.00
3711.01VDAC2'protein_coding'1336AEGain100.4011EU ES AB ER11b50.00
4810.85BCRL4'protein_coding'211AEGain12.5210EU AB IR E4_Da50.00
51110.53HNRNPA3'protein_coding'1137AEGain141.298EU ES AB ER3b75.00
6129.72BZW1'protein_coding'1847AEGain73.319EU ES AB ER14c50.00
7139.44PARP1'protein_coding'1042AEGain30.133EU AB ER24c100.00
8168.33RNASEK'protein_coding'24AEGain34.992EU CE I2_AR10
9178.05AC096663.2'pseudogene'24AEGain96.263EU AB E1_Da0
10187.91RPS10'protein_coding'714AELoss-14.305EU E6a_E7a75.00
11197.80TEX261'protein_coding'821AELoss-18.472EU ES ER1f100.00
12207.53DDX41'protein_coding'117AELoss-26.971EU E2a_E3a0
13257.14KIFC1'protein_coding'519AELoss-26.624EU AB E4_Da0
14267.09RPS27'protein_coding'410AELoss-23.471EU E2a_E2b0
15277.00NEDD9'protein_coding'1021AELoss-15.532EU ES E8a_E12a100.00
16286.94MGEA5'protein_coding'1340AEGain23.834EU ES AB ER17d0.00
17296.92FAM110A'protein_coding'47AELoss-13.462AB E3_Da0
18306.87UCRC'protein_coding'410AELoss-14.918EU ES AB E1b_E2a80.00
19316.82UBE2V1'protein_coding'2142AELoss-12.959EU AB ER14b66.67
20336.73NME1'protein_coding'923AEGain12.103EU AB ER4b0.00
21346.67HMGN1'protein_coding'2146AEGain21.5510EU AB ER5j60.00
22366.65EMD'protein_coding'923AELoss-19.372EU AB E4_Dh0
23376.65MYCBP2'protein_coding'12118AEGain13.804EU ES AB E60_Da0.00
24386.57C6orf62'protein_coding'39AELoss-17.341AB E1_Da0
25406.50AHCTF1'protein_coding'1153AEGain14.207EU ES E28a_E29a0.00
26416.42ATG4B'protein_coding'2970AELoss-14.048EU ES AB E4a_E4c25.00
27426.38RP11-295P9.2'protein_coding'515AELoss-16.774AB IR E9_Da0
28436.37PSMC1'protein_coding'111AEGain18.735EU E7a_E8a50.00
29446.37SEPT9'protein_coding'923AEGain11.744EU ES E5a_E8c33.33
30456.35ATG9A'protein_coding'2273AEGain17.972EU AB E16_Dc0
31466.32XXbac-BPG246D15.6'processed_transcript'614AELoss-14.343ES AB E1a_E2a100.00
32476.32AC116353.1'protein_coding'224AELoss-17.007EU E2a_E3a66.67
33506.24TOMM7'protein_coding'714AELoss-13.021ES E1a_E3b0
34526.13ATG12'protein_coding'26AELoss-15.543EU AB E1_Da0
35536.13STRA13'protein_coding'38AELoss-9.593EU E3a_E4a100.00
36546.10ANP32E'protein_coding'716AEGain11.801EU ER8c0
37556.08EIF4G2'protein_coding'426AEGain16.004EU ES E1a_E4a0.00
38566.06EIF2S2'protein_coding'19AELoss-7.745EU E1a_E2a75.00
39576.05TMEM199'protein_coding'312AEGain17.843EU ER3b50.00
40586.02RPL29'protein_coding'917AELoss-6.962EU ES E2b_E3a100.00
41596.02COMMD3'protein_coding'2140AELoss-10.567EU ES AB E1a_E4b25.00
42605.98SNRPC'protein_coding'411AEGain8.845EU ES E1a_E3a50.00
43615.98MRFAP1'protein_coding'38AELoss-30.632EU AB E1_Ad0
44625.97C20orf199'processed_transcript'810AELoss-10.315EU ES E2a_E6a75.00
45635.97ELMO1'protein_coding'2463AEGain11.532EU ER1g0.00
46645.95ACAD8'protein_coding'211AELoss-14.083EU E1a_E2a0.00
47655.88PITPNM1'protein_coding'225AELoss-12.841EU E1a_E2a0
48665.87VPS33A'protein_coding'113AELoss-13.333EU E1a_E2a50.00
49675.85MRPL27'protein_coding'37AEGain9.623EU AB E4_Da100.00
50685.84AIM2'protein_coding'417AELoss-8.972EU E10c_E11a100.00
51695.84ZRANB2'protein_coding'621AELoss-12.335EU E2a_E3a25.00
52705.82TCF12'protein_coding'527AELoss-39.045EU AB ENST0000034382766.67
53715.76RBBP9'protein_coding'412AELoss-28.663EU E1a_E2a100.00
54725.76WRB'protein_coding'1835AELoss-11.762EU ES E1a_E4a100.00
55735.76ZFAND1'protein_coding'18AELoss-9.162EU ER3a100.00
56745.74PARL'protein_coding'1026AELoss-15.392EU E1b_E2a100.00
57755.74UTS2'protein_coding'414AELoss-9.534EU AB E2a_E3a100.00
58765.73TFEB'protein_coding'2038AEGain10.804EU AB E17_Da0.00
59775.73RPL7'protein_coding'926AELoss-2.823EU AB E7a_E8a0.00
60785.72TLK2'protein_coding'323AELoss-13.704EU E10a_E11a33.33
61805.71FKBP1A'protein_coding'922AEGain11.931AB E7_Db0
62815.70LANCL1'protein_coding'1033AEGain6.333EU ER2d50.00
63825.69PLCXD1'protein_coding'924AEGain8.524EU ES AB ER9c50.00
64835.69RPS21'protein_coding'819AEGain8.728EU AB ER3i33.33
65855.69INPP5B'protein_coding'1342AELoss-11.833EU ER2c50.00
66865.68KIN'protein_coding'521AELoss-12.102EU E1a_E2a0.00
67875.66RAB8B'protein_coding'211AEGain8.045EU AB E3_Da33.33
68885.65RP4-564F22.1'protein_coding'1129AELoss-10.403EU ES AB E1a_E2a0.00
69895.65AC018737.4'processed_transcript'513AELoss-11.532EU AB E2_Ad0
70905.64FAM118A'protein_coding'1847AELoss-9.401ES E4a_E7a0
71915.64NUDT16L1'protein_coding'25AELoss-9.871EU E1a_E2a0
72925.63CRNKL1'protein_coding'723AELoss-28.131EU E2e_E3a0
73935.62CDK5RAP3'protein_coding'114AEGain26.791AB E2_Aa0
74945.61DPH5'protein_coding'2054AEGain11.638EU ES AB ER18c25.00
75955.61DALRD3'protein_coding'1641AELoss-9.684EU AB E3a_E3g0.00
76985.59RPL39'protein_coding'48AELoss-9.131ES E1c_E3a0
77995.59TATDN1'protein_coding'112AEGain6.623EU I1_SR1100.00
781005.58HLA-DQB1'protein_coding'919AELoss-8.273EU E2b_E3a100.00
791015.57STYXL1'protein_coding'1635AELoss-9.623EU E1a_E2a50.00
801025.57LUC7L'protein_coding'2148AELoss-11.718EU ES AB E1a_E1q66.67
811035.57DBNL'protein_coding'2764AELoss-7.427EU AB E2_Da50.00
821045.49SRC'protein_coding'1438AELoss-10.275EU ES E1a_E3a50.00
831055.49SLC5A6'protein_coding'1956AELoss-8.715EU ES AB CE E3_Aa100.00
841075.48CCDC58'protein_coding'717AEGain7.874EU AB E8_Dd100.00
851085.47WDR45'protein_coding'3074AELoss-9.376EU AB E4a_E5a25.00
861095.46SNX13'protein_coding'1658AELoss-10.196EU AB E1_Da0.00
871105.44TMEM41B'protein_coding'29AEGain10.122CE I4_AR20
881115.44ZNF581'protein_coding'12AELoss-7.651EU E1a_E2a0
891125.43SRP9'protein_coding'410AEGain9.604EU ES ENST0000030478666.67
901135.43RPL18A'protein_coding'27AEGain46.982EU E2a_E3a100.00
911145.41RAB4A'protein_coding'518AEGain11.292EU ER1b0.00
921155.40HELZ'protein_coding'133AELoss-20.982EU E3a_E4a100.00
931165.39BIN3'protein_coding'211AELoss-6.983EU E4a_E5a100.00
941175.39INTS4'protein_coding'227AEGain7.991AB E25_Da0
951185.39ECHDC3'protein_coding'614AELoss-8.001AB E1_Ac0
961195.38FAM21C'protein_coding'945AEGain22.975EU ER6b0.00
971205.38ISCA1'protein_coding'512AELoss-11.353EU ES E1a_E3a0.00
981225.38MTMR2'protein_coding'1545AEGain8.551EU ER3c0
991255.37FAM3C'protein_coding'724AEGain23.356EU AB ER10c50.00
1001265.36DCI'protein_coding'17AEGain8.781AB E1_Da0
1011275.36CD79B'protein_coding'37AELoss-7.975EU E1a_E2b100.00
1021285.36CCDC117'protein_coding'718AELoss-14.564EU AB E1_Db100.00
1031295.35KIAA0748'protein_coding'315AELoss-25.114EU ES E1a_E3a66.67
1041305.34MRPL10'protein_coding'718AEGain8.0611EU ES AB E1a_E2b75.00
1051315.33QRICH1'protein_coding'1438AELoss-10.156EU ES AB E1c_E4a33.33
1061325.33SNORA43'processed_transcript'410AELoss-10.733AB E5_Aa0
1071345.33RPS15'protein_coding'14AELoss-9.651EU E3a_E4a0
1081355.33PES1'protein_coding'1344AELoss-8.112EU E6a_E7a100.00
1091375.32CNOT4'protein_coding'1236AELoss-9.584EU AB CE E1_Af0.00
1101385.30CKS2'protein_coding'13AELoss-9.641EU E1a_E2a0
1111395.29C1orf38'protein_coding'1223AEGain17.488EU E2a_E3a71.43
1121405.29NDUFA3'protein_coding'1736AELoss-19.1910EU ES AB E4a_E4c71.43
1131425.28PPAN'protein_coding'1033AEGain21.916EU AB ER4a0.00
1141435.26TNFSF10'protein_coding'820AELoss-7.383EU AB E1_Ag0.00
1151445.25NUBP1'protein_coding'212AELoss-10.921EU E2a_E3a0
1161455.25TMPO'protein_coding'411AEGain8.732EU AB ER1a0
1171465.24YY1AP1'protein_coding'2650AEGain19.215EU AB CE ER14f0.00
1181475.23RPS7'protein_coding'922AELoss-11.217EU E2e_E2f50.00
1191485.22STX16'protein_coding'2455AELoss-5.525EU AB E1_Db100.00
1201495.21TMEM183A'protein_coding'516AEGain7.727EU ES ER7b50.00
1211505.21AC010619.2'protein_coding'15AELoss-9.642EU E2a_E3a0.00
1221515.20TMEM161A'protein_coding'212AELoss-9.321EU E2a_E3a0
1231525.19WDR42A'protein_coding'1751AELoss-10.664EU AB E1b_E2b0
1241545.18DHFRL1'protein_coding'512AELoss-6.894EU AB E3_Da100.00
1251555.18MAT2A'protein_coding'1439AELoss-6.363EU ER1g0.00
1261565.16SARNP'protein_coding'214AELoss-9.863EU E2a_E3a50.00
1271575.15PPP2R5C'protein_coding'620AELoss-8.292EU AB E4a_E5a0
1281585.14EBF1'protein_coding'219AEGain7.843EU CE I6_AR210
1291595.14CORO1B'protein_coding'416AELoss-8.813EU AB E1_Da0
1301605.14PI4KAP1'processed_transcript'834AELoss-8.053EU CE I3_AR20.00
1311615.13ERH'protein_coding'14AEGain7.582EU E3a_E4a0.00
1321625.12UBR7'protein_coding'211AELoss-8.251EU E1a_E2a0
1331665.10RPL31'protein_coding'1122AELoss-5.665EU AB E1b_E2a33.33
1341685.10DAP3'protein_coding'2454AELoss-6.288EU AB E3a_E4a0.00
1351695.10RANBP2'protein_coding'1149AEGain7.497EU AB CE I9_AR20.00
1361705.09NCRNA00081'processed_transcript'819AELoss-17.323EU ES AB E2a_E4a0.00
1371715.09ATL2'protein_coding'1744AEGain7.855EU AB IR ER18d0
1381725.09TTC31'protein_coding'1750AELoss-9.133EU E2a_E3a0.00
1391735.09THOC2'protein_coding'2387AELoss-18.1510EU AB E2a_E3a62.50
1401745.09MTX1'protein_coding'619AELoss-8.257EU ES AB E6_Da50.00
1411755.09BTN2A3'protein_coding'721AEGain9.143EU ER2a50.00
1421765.09CD52'protein_coding'36AELoss-20.842ES AB E1a_E3a0
1431775.08ATG16L1'protein_coding'2060AELoss-6.505EU AB E5_Aa50.00
1441785.08RSBN1'protein_coding'414AEGain7.881AB E1_Ae0
1451795.06AC005083.1'processed_transcript'514AEGain7.321AB E1_Da0
1461805.06MRPL20'protein_coding'614AELoss-6.275EU AB CE E1a_E2a100.00
1471815.05IDH1'protein_coding'1338AELoss-8.135EU ES AB E3b_E5d66.67
1481825.05RPL11'protein_coding'511AELoss-9.471EU E3a_E4a0
1491835.04PHF11'protein_coding'2044AELoss-7.334EU ES AB E1a_E4a0.00
1501845.04RPL10'protein_coding'1939AEGain23.6911EU AB E6b_E6d55.56
1511875.03NOMO1'protein_coding'234AEGain9.305EU ER25a0.00
1521895.03C15orf57'protein_coding'37AELoss-6.451AB E3_Da0
1531915.02TYW1'protein_coding'1236AEGain6.437EU AB E19_Db75.00
1541925.01GGA2'protein_coding'117AELoss-6.792EU E1a_E2a0.00
1551955.00EIF4E'protein_coding'310AELoss-21.297EU ES AB E4a_E5a50.00
1561964.99LRCH3'protein_coding'1958AELoss-9.054ES AB CE E13_Aa0
1571974.99SLCO4A1'protein_coding'1137AEGain10.633EU AB E1_Ab100.00
1581994.98RPS13'protein_coding'16AELoss-5.372EU E3a_E4a100.00
1592004.97C6orf129'protein_coding'37AELoss-10.823EU AB E2a_E3a100.00
1602014.97C10orf54'protein_coding'415AELoss-7.562EU AB E1a_E2a0
1612024.97HN1'protein_coding'1224AELoss-7.483EU ES ER4a0.00
1622034.97NDUFB7'protein_coding'13AELoss-8.661EU E1a_E2a0
1632044.96C7orf70'protein_coding'12AEGain8.271EU E1a_E2a0
1642054.96WBSCR16'protein_coding'417AEGain9.052EU ER9a0.00
1652064.96AC100786.1'protein_coding'26AELoss-8.862EU E3a_E4a100.00
1662084.96GSTM4'protein_coding'1537AELoss-5.318EU AB E1_Ag50.00
1672094.96C9orf6'protein_coding'513AELoss-5.902EU ER1d100.00
1682104.96CCL22'protein_coding'13DELoss-31.022EU CCL220.00
1692114.95ACIN1'protein_coding'627AELoss-9.426EU ES E1a_E2a50.00
1702124.94PTTG1IP'protein_coding'820AEGain8.908EU ES AB E9_Da25.00
1712154.92RPL3'protein_coding'2248AELoss-8.698EU ES AB E4e_E6c0.00
1722164.92IL17RB'protein_coding'316DELoss-30.2314EU ES AB IR IL17RB25.00
1732174.91KIAA1191'protein_coding'410AELoss-9.502EU ES E1a_E2a0.00
1742184.90CRCP'protein_coding'922AEGain16.423EU ES ER10d0.00
1752194.89TASP1'protein_coding'822AELoss-8.131AB E2_Ab0
1762204.89CYBA'protein_coding'16AELoss-6.423EU E2a_E3a50.00
1772214.89RNF123'protein_coding'1580AEGain18.1711EU AB ER33c50.00
1782224.88BTN3A2'protein_coding'315AELoss-6.452EU ER2a100.00
1792234.88DGKZ'protein_coding'639AEGain9.3912EU ES AB ER20a40.00
1802244.87ACSL3'protein_coding'934AELoss-6.436EU ES AB E4a_E5a50.00
1812264.86TAF12'protein_coding'412AELoss-6.173EU AB E9_Aa100.00
1822284.86PSMB8'protein_coding'513AELoss-9.211EU E2a_E3a0
1832294.85TMEM111'protein_coding'517AELoss-8.762AB E2_Ad0
1842304.84PBK'protein_coding'18AELoss-9.163EU E1a_E2a50.00
1852324.84TRAPPC3'protein_coding'819AELoss-7.784EU ES AB E1a_E2b0.00
1862334.84DUS2L'protein_coding'219AELoss-8.171EU E2a_E3a0
1872344.84LMNA'protein_coding'2162AELoss-7.062AB E7_Da0
1882354.83SUV39H1'protein_coding'731AELoss-8.0810EU AB ER3c40.00
1892364.83POLR2I'protein_coding'16AELoss-6.514EU AB E2_Aa50.00
1902374.82COPS7B'protein_coding'2247AELoss-6.494EU AB CE I10_AR1100.00
1912384.82RPL24'protein_coding'616AELoss-5.134EU AB E2_Ab0.00
1922394.82ANAPC1'protein_coding'1170AEGain6.226EU AB ER43a0.00
1932404.81IGHMBP2'protein_coding'115AELoss-8.002EU CE I8_AR40
1942414.81RAB9A'protein_coding'25AELoss-21.323EU ES E1a_E2a50.00
1952424.81PSMB9'protein_coding'720AELoss-6.662EU E4a_E4c100.00
1962434.80PRAF2'protein_coding'37AELoss-6.591EU ER1c0
1972454.80NLE1'protein_coding'626AELoss-9.312EU E1b_E2a100.00
1982464.79C19orf42'protein_coding'920AELoss-8.424ES AB E4a_E9a0.00
1992474.79PGS1'protein_coding'315AELoss-15.691EU E1a_E2a0
2002484.79KAT5'protein_coding'315AELoss-7.023EU E2a_E3a50.00
2012494.79KIAA0913'protein_coding'1552AELoss-7.151AB E21_Da0
2022504.79TP53TG1'processed_transcript'510AELoss-5.892EU E1a_E1c0.00
2032514.78TCEB2'protein_coding'410AELoss-9.392ES E2a_E4a100.00
2042524.78PTMA'protein_coding'1439AELoss-6.3710EU AB E3_Af50.00
2052534.78CUGBP1'protein_coding'619AELoss-16.033EU AB CE E15a_E16a0
2062544.78PPP2R3C'protein_coding'113AEGain6.931IR Ix0
2072554.78RAB8A'protein_coding'210AELoss-5.974EU E1a_E2a66.67
2082564.77AP4B1'protein_coding'1639AELoss-7.066EU AB CE E5_De0.00
2092574.77RFC5'protein_coding'824AELoss-6.713EU ES E1a_E3b50.00
2102584.77RPL13'protein_coding'821AELoss-8.853EU AB E1c_E1h0.00
2112594.76RAP1B'protein_coding'820AEGain7.664EU AB E8a_E9a50.00
2122604.76RPS20'protein_coding'26AEGain5.303EU E2a_E3a100.00
2132614.76ZNF589'protein_coding'1024AELoss-6.493EU ES AB E2a_E5a0.00
2142624.75MAPK12'protein_coding'1350AEGain8.052EU AB ER1b0
2152634.75LDLR'protein_coding'218AELoss-7.122EU ES E1a_E2a0.00
2162644.75NFKBIL2'protein_coding'643AELoss-7.744EU AB E2a_E3a0.00
2172654.75METTL2A'protein_coding'210AEGain16.192EU ER4a0.00
2182664.74TPI1'protein_coding'924AEGain7.572EU ES E3a_E4a0.00
2192674.73DGCR6L'protein_coding'39AELoss-6.144EU AB ER2a100.00
2202684.73IMPDH2'protein_coding'1238AELoss-8.283EU E1a_E2a50.00
2212694.73BLVRB'protein_coding'15AELoss-8.071EU E1a_E2a0
2222704.73NVL'protein_coding'2664AELoss-6.345EU AB ER3a100.00
2232714.73CCDC49'protein_coding'110AELoss-6.921EU E1a_E2a0
2242724.73EXOC6B'protein_coding'937AELoss-8.533EU ES AB E8a_E10a0.00
2252734.72MAGOHB'protein_coding'27AEGain6.734EU ER1a33.33
2262744.72C21orf33'protein_coding'1128AELoss-8.467EU AB E1_Ag0.00
2272754.72ATP6V0E1'protein_coding'14AELoss-6.011EU E1a_E2a0
2282764.72DNASE1L3'protein_coding'924AEGain7.752EU E3b_E4a0.00
2292774.71ACOT8'protein_coding'1634AELoss-5.924EU ES AB E1a_E4b100.00
2302784.71USP5'protein_coding'222AELoss-8.733EU E1a_E2a0.00
2312794.71GUSBL2'processed_transcript'616AELoss-7.305EU ES E2b_E3a50.00
2322814.71CIT'protein_coding'555AELoss-8.422EU E2a_E3a0.00
2332854.69BECN1'protein_coding'214AELoss-6.962EU E1a_E2a0.00
2342864.69ZNF740'protein_coding'28AELoss-8.391CE I2_AR10
2352874.69ZNF629'protein_coding'13AELoss-8.651EU E1a_E2a0
2362884.69ASNA1'protein_coding'29AELoss-4.503EU E1b_E2a100.00
2372894.68ZNF562'protein_coding'37AEGain6.561AB E3_Da0
2382904.68CXorf56'protein_coding'516AELoss-8.432EU E1a_E2a0.00
2392914.67C1orf55'protein_coding'315AELoss-8.565EU AB E1a_E2a33.33
2402924.67FCGR2C'protein_coding'720AEGain20.114EU AB E1_Ab0
2412934.67MPZL1'protein_coding'1126AELoss-7.572EU AB E3_Af0
2422944.66SLC25A43'protein_coding'822AEGain6.123EU AB E4_Db100.00
2432954.66SECISBP2'protein_coding'935AEGain6.834EU AB CE I15_AR10
2442964.66XPO1'protein_coding'3188AELoss-18.345EU AB E2_Ah0
2452974.66ZNF367'protein_coding'15AEGain7.591CE I1_AR10
2462994.65AC055876.3'protein_coding'229AELoss-13.332EU I28_SR20
2473004.65MTO1'protein_coding'1338AEGain7.583EU AB E4c_E5a0.00
2483014.64PRPF40B'protein_coding'632AELoss-6.0133EU AB IR CE E17_Aa16.67
2493024.64IVD'protein_coding'1132AELoss-5.963EU AB E1a_E2a0.00
2503034.64AC004086.1'protein_coding'28AELoss-6.312EU E1b_E2a0.00
2513044.64GPKOW'protein_coding'228AELoss-11.603EU ER1e100.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1113.52IGKV3-11'IG_V_gene'12DEGain11717.750N/AIGKV3-11N/A
2312.77IGHV3-53'IG_V_gene'12DEGain6999.420N/AIGHV3-53N/A
3412.59EEF1A1'protein_coding'1131AEGain240.218EU ER6a14.29
4711.01VDAC2'protein_coding'1336AEGain100.4011EU ES AB ER11b50.00
5810.85BCRL4'protein_coding'211AEGain12.5210EU AB IR E4_Da50.00
61110.53HNRNPA3'protein_coding'1137AEGain141.298EU ES AB ER3b75.00
7129.72BZW1'protein_coding'1847AEGain73.319EU ES AB ER14c50.00
8139.44PARP1'protein_coding'1042AEGain30.133EU AB ER24c100.00
9168.33RNASEK'protein_coding'24AEGain34.992EU CE I2_AR10
10178.05AC096663.2'pseudogene'24AEGain96.263EU AB E1_Da0
11286.94MGEA5'protein_coding'1340AEGain23.834EU ES AB ER17d0.00
12336.73NME1'protein_coding'923AEGain12.103EU AB ER4b0.00
13346.67HMGN1'protein_coding'2146AEGain21.5510EU AB ER5j60.00
14376.65MYCBP2'protein_coding'12118AEGain13.804EU ES AB E60_Da0.00
15406.50AHCTF1'protein_coding'1153AEGain14.207EU ES E28a_E29a0.00
16436.37PSMC1'protein_coding'111AEGain18.735EU E7a_E8a50.00
17446.37SEPT9'protein_coding'923AEGain11.744EU ES E5a_E8c33.33
18456.35ATG9A'protein_coding'2273AEGain17.972EU AB E16_Dc0
19516.22CHI3L2'protein_coding'1229DEGain74.800N/ACHI3L2N/A
20546.10ANP32E'protein_coding'716AEGain11.801EU ER8c0
21556.08EIF4G2'protein_coding'426AEGain16.004EU ES E1a_E4a0.00
22576.05TMEM199'protein_coding'312AEGain17.843EU ER3b50.00
23605.98SNRPC'protein_coding'411AEGain8.845EU ES E1a_E3a50.00
24635.97ELMO1'protein_coding'2463AEGain11.532EU ER1g0.00
25675.85MRPL27'protein_coding'37AEGain9.623EU AB E4_Da100.00
26765.73TFEB'protein_coding'2038AEGain10.804EU AB E17_Da0.00
27805.71FKBP1A'protein_coding'922AEGain11.931AB E7_Db0
28815.70LANCL1'protein_coding'1033AEGain6.333EU ER2d50.00
29825.69PLCXD1'protein_coding'924AEGain8.524EU ES AB ER9c50.00
30835.69RPS21'protein_coding'819AEGain8.728EU AB ER3i33.33
31875.66RAB8B'protein_coding'211AEGain8.045EU AB E3_Da33.33
32935.62CDK5RAP3'protein_coding'114AEGain26.791AB E2_Aa0
33945.61DPH5'protein_coding'2054AEGain11.638EU ES AB ER18c25.00
34995.59TATDN1'protein_coding'112AEGain6.623EU I1_SR1100.00
351075.48CCDC58'protein_coding'717AEGain7.874EU AB E8_Dd100.00
361105.44TMEM41B'protein_coding'29AEGain10.122CE I4_AR20
371125.43SRP9'protein_coding'410AEGain9.604EU ES ENST0000030478666.67
381135.43RPL18A'protein_coding'27AEGain46.982EU E2a_E3a100.00
391145.41RAB4A'protein_coding'518AEGain11.292EU ER1b0.00
401175.39INTS4'protein_coding'227AEGain7.991AB E25_Da0
411195.38FAM21C'protein_coding'945AEGain22.975EU ER6b0.00
421225.38MTMR2'protein_coding'1545AEGain8.551EU ER3c0
431255.37FAM3C'protein_coding'724AEGain23.356EU AB ER10c50.00
441265.36DCI'protein_coding'17AEGain8.781AB E1_Da0
451305.34MRPL10'protein_coding'718AEGain8.0611EU ES AB E1a_E2b75.00
461335.33C20orf103'protein_coding'27DEGain40.300N/AC20orf103N/A
471365.33IQGAP2'protein_coding'237DEGain40.110N/AIQGAP2N/A
481395.29C1orf38'protein_coding'1223AEGain17.488EU E2a_E3a71.43
491425.28PPAN'protein_coding'1033AEGain21.916EU AB ER4a0.00
501455.25TMPO'protein_coding'411AEGain8.732EU AB ER1a0
511465.24YY1AP1'protein_coding'2650AEGain19.215EU AB CE ER14f0.00
521495.21TMEM183A'protein_coding'516AEGain7.727EU ES ER7b50.00
531585.14EBF1'protein_coding'219AEGain7.843EU CE I6_AR210
541615.13ERH'protein_coding'14AEGain7.582EU E3a_E4a0.00
551695.10RANBP2'protein_coding'1149AEGain7.497EU AB CE I9_AR20.00
561715.09ATL2'protein_coding'1744AEGain7.855EU AB IR ER18d0
571755.09BTN2A3'protein_coding'721AEGain9.143EU ER2a50.00
581785.08RSBN1'protein_coding'414AEGain7.881AB E1_Ae0
591795.06AC005083.1'processed_transcript'514AEGain7.321AB E1_Da0
601845.04RPL10'protein_coding'1939AEGain23.6911EU AB E6b_E6d55.56
611875.03NOMO1'protein_coding'234AEGain9.305EU ER25a0.00
621915.02TYW1'protein_coding'1236AEGain6.437EU AB E19_Db75.00
631935.00KIAA0125'protein_coding'825DEGain32.080N/AKIAA0125N/A
641974.99SLCO4A1'protein_coding'1137AEGain10.633EU AB E1_Ab100.00
651984.98RAB31'protein_coding'29DEGain31.590N/ARAB31N/A
662044.96C7orf70'protein_coding'12AEGain8.271EU E1a_E2a0
672054.96WBSCR16'protein_coding'417AEGain9.052EU ER9a0.00
682124.94PTTG1IP'protein_coding'820AEGain8.908EU ES AB E9_Da25.00
692184.90CRCP'protein_coding'922AEGain16.423EU ES ER10d0.00
702214.89RNF123'protein_coding'1580AEGain18.1711EU AB ER33c50.00
712234.88DGKZ'protein_coding'639AEGain9.3912EU ES AB ER20a40.00
722394.82ANAPC1'protein_coding'1170AEGain6.226EU AB ER43a0.00
732544.78PPP2R3C'protein_coding'113AEGain6.931IR Ix0
742594.76RAP1B'protein_coding'820AEGain7.664EU AB E8a_E9a50.00
752604.76RPS20'protein_coding'26AEGain5.303EU E2a_E3a100.00
762624.75MAPK12'protein_coding'1350AEGain8.052EU AB ER1b0
772654.75METTL2A'protein_coding'210AEGain16.192EU ER4a0.00
782664.74TPI1'protein_coding'924AEGain7.572EU ES E3a_E4a0.00
792734.72MAGOHB'protein_coding'27AEGain6.734EU ER1a33.33
802764.72DNASE1L3'protein_coding'924AEGain7.752EU E3b_E4a0.00
812894.68ZNF562'protein_coding'37AEGain6.561AB E3_Da0
822924.67FCGR2C'protein_coding'720AEGain20.114EU AB E1_Ab0
832944.66SLC25A43'protein_coding'822AEGain6.123EU AB E4_Db100.00
842954.66SECISBP2'protein_coding'935AEGain6.834EU AB CE I15_AR10
852974.66ZNF367'protein_coding'15AEGain7.591CE I1_AR10
862984.65MYOF'protein_coding'1375DEGain25.190N/AMYOFN/A
873004.65MTO1'protein_coding'1338AEGain7.583EU AB E4c_E5a0.00
883124.62TRAPPC10'protein_coding'1447AEGain7.815EU IR I15_SR10.00
893184.61IFI27'protein_coding'38DEGain24.380N/AIFI27N/A
903204.60AC126544.3'pseudogene'26AEGain7.752EU E2a_E3a0.00
913234.60TYW3'protein_coding'819AEGain6.851EU ER1a0
923254.59CHEK2'protein_coding'3065AEGain7.224EU ER23b0.00
933324.56MKL2'protein_coding'422AEGain5.962EU ER1a0.00
943354.56NAPRT1'protein_coding'1335AEGain7.214EU AB E2_Da0.00
953494.53HN1L'protein_coding'410AEGain15.354EU ES E3a_E4a66.67
963514.53CCDC52'protein_coding'832AEGain11.513EU ES AB E1b_E2a100.00
973564.51CENPO'protein_coding'927AEGain15.294EU AB ER8c0.00
983594.50SIGLEC12'protein_coding'830AEGain5.745EU ES I11_SR133.33
993604.50RPS17'protein_coding'15AEGain17.771EU ER3a0
1003674.48AKAP11'protein_coding'113AEGain6.891EU E10a_E11a0
1013704.47NDUFB3'protein_coding'410AEGain7.013EU AB E5_Da0.00
1023724.47UBAC1'protein_coding'621AEGain6.441AB E1_Ab0
1033734.47EXOSC3'protein_coding'818AEGain6.274EU AB E2_Da0
1043764.46ADSL'protein_coding'1132AEGain12.285EU AB ER3a0.00
1053774.46SPOPL'protein_coding'418AEGain4.712EU AB E1_Da0
1063804.46VARS2'protein_coding'1265AEGain7.061AB E22_Ab0
1073814.45UBE2D4'protein_coding'1125AEGain10.7710EU ES AB ER9d62.50
1083854.45POMGNT1'protein_coding'1141AEGain5.666EU AB E19_Aa66.67
1093924.44ALOX5'protein_coding'623DEGain21.660N/AALOX5N/A
1103944.43PKIG'protein_coding'916AEGain5.562ES CE I7_AR30
1113964.42ABCB4'protein_coding'1049AEGain6.374EU ER5b33.33
1124024.41FANCG'protein_coding'830AEGain5.303EU AB E7_Db100.00
1134034.41DHODH'protein_coding'29AEGain7.523EU AB E2_Da0
1144074.39TFPT'protein_coding'616AEGain6.867EU AB E1_Ac66.67
1154184.38SLC2A4RG'protein_coding'1127AEGain5.913EU AB E5_Ab0
1164204.37C1orf131'protein_coding'1124AEGain6.334EU AB E5_Da0.00
1174214.37KDELR2'protein_coding'616AEGain12.527EU AB ER1c66.67
1184224.37AC090204.3'lincRNA'14AEGain6.872EU AB E2a_E3a0
1194244.37CASP1'protein_coding'1017DEGain20.636EU ES AB CASP10.00
1204254.37BRCA1'protein_coding'3365AEGain6.8110EU AB IR I150.00
1214314.36ZNF766'protein_coding'37AEGain7.073EU CE I1_AR20.00
1224334.36KRIT1'protein_coding'2666AEGain6.6310EU ES AB E1d_E2a40.00
1234384.35MAML3'protein_coding'411DEGain20.390N/AMAML3N/A
1244424.34MBTPS2'protein_coding'314AEGain5.492EU I6_SR10
1254434.34WDR75'protein_coding'632AEGain6.282EU ES E2a_E4b0.00
1264474.34ALG6'protein_coding'928AEGain7.062EU AB E1_Ab0
1274484.34C1orf123'protein_coding'720AEGain6.413EU AB E1_Dd0.00
1284514.33LTBP1'protein_coding'1664DEGain20.160N/ALTBP1N/A
1294594.33HLA-J'protein_coding'923AEGain7.361AB E4_Aa0
1304624.32RUFY4'protein_coding'1139DEGain20.000N/ARUFY4N/A
1314634.32ZUFSP'protein_coding'413AEGain7.251AB E1_Da0
1324644.32NDUFB8'protein_coding'615AEGain5.003EU E2a_E3a100.00
1334674.31IGKV3D-11'IG_V_gene'12DEGain19.840N/AIGKV3D-11N/A
1344694.31FCGR2B'protein_coding'1227AEGain18.714EU ER1c66.67
1354714.30PTHLH'protein_coding'49DEGain19.760N/APTHLHN/A
1364724.30ZNF32'protein_coding'410AEGain7.091EU ER4e0
1374754.30NDUFB2'protein_coding'1632AEGain6.515EU ES E9a_E11b25.00
1384934.26AP001340.1'pseudogene'24AEGain5.063EU AB E1a_E1b100.00
1394944.26EIF1AX'protein_coding'29AEGain6.431EU E4a_E5a0
1404954.26MAPRE2'protein_coding'311AEGain6.662EU ES E1a_E3a0.00
1414974.25STMN1'protein_coding'1124AEGain6.745EU AB ER8b0.00
1425044.24AC005829.2'protein_coding'411AEGain6.531AB E5_Da0
1435054.24TECR'protein_coding'215AEGain15.324EU ER12a66.67
1445104.23GUSB'protein_coding'1745AEGain12.115EU ES AB E1b_E4b50.00
1455144.23MTMR10'protein_coding'418AEGain6.413EU CE I5_AR50
1465174.22ZNF775'protein_coding'1227AEGain5.702EU AB E2_Ab0
1475184.22CCNE2'protein_coding'213AEGain17.003EU E4a_E5a50.00
1485204.22C11orf82'protein_coding'25AEGain18.072AB E4_Aa0
1495214.21PALB2'protein_coding'113AEGain6.252EU AB E12_Aa0
1505244.21AD000813.2'lincRNA'14AEGain15.012EU AB E2a_E3a0
1515334.20PRPF18'protein_coding'520AEGain6.312ES AB E2_Aa0
1525374.20BCAS3'protein_coding'836AEGain3.1415EU AB CE E15a_E16a55.56
1535424.20RXRB'protein_coding'722AEGain12.726EU AB ER1b50.00
1545434.20RPL36A'protein_coding'1021AEGain6.517EU ES E2c_E3b33.33
1555504.19EEF1B2'protein_coding'1128AEGain5.9814EU AB E3_Da33.33
1565514.19C15orf29'protein_coding'110AEGain6.664EU AB E8_Da50.00
1575524.19STAG3L4'protein_coding'717AEGain8.374EU AB E1_Db50.00
1585544.18IL8RBP'processed_transcript'23DEGain18.170N/AIL8RBPN/A
1595574.18MTG1'protein_coding'1031AEGain13.151AB E8_De0
1605584.18SCRN1'protein_coding'1227DEGain18.100N/ASCRN1N/A
1615604.17SIP1'protein_coding'414AEGain16.854EU ES E2a_E3a33.33
1625624.17ATP10D'protein_coding'226AEGain5.794EU AB E1_Da0
1635634.17MGLL'protein_coding'1429AEGain4.896EU ES E8a_E9b80.00
1645654.17FCER1G'protein_coding'38DEGain18.010N/AFCER1GN/A
1655684.16GEMIN6'protein_coding'311AEGain5.432ES AB E4_Da0
1665714.15TARS2'protein_coding'1443AEGain14.034EU AB E2_Ac0.00
1675854.13AC120024.1'protein_coding'312AEGain12.072EU ES E2a_E4a0.00
1685884.13EPB41L2'protein_coding'1132AEGain5.641ES E16a_E19a0
1695894.13NDUFC1'protein_coding'311AEGain5.912EU AB E5_Ab0
1705924.13PPIL5'protein_coding'38AEGain5.471AB E1_Da0
1715954.12PITPNB'protein_coding'1337AEGain5.602EU AB E4_Da0
1725964.12MRPL30'protein_coding'1027AEGain6.194EU ER9b0.00
1736024.12FOXRED1'protein_coding'212AEGain11.113AB E9_Da0
1746044.11ATAD5'protein_coding'123AEGain5.742EU AB E15_Aa0
1756064.11TXNDC11'protein_coding'423AEGain10.021AB E20_Aa0
1766074.11FKBP3'protein_coding'29AEGain3.404EU E3a_E4a100.00
1776134.11VTI1B'protein_coding'16AEGain4.832EU ES E1a_E3a100.00
1786174.10UBE2G2'protein_coding'1535AEGain8.3812EU AB E1_Aj75.00
1796184.10VPS16A'protein_coding'938AEGain4.901EU ER18b0
1806294.09CHIC1'protein_coding'517AEGain6.563EU ES E8a_E9a50.00
1816324.08TMX1'protein_coding'210AEGain5.592EU CE I8_AR80
1826394.07MRPS11'protein_coding'311AEGain11.783EU CE E1a_E2a100.00
1836444.07RPL32'protein_coding'822AEGain5.811AB ENST000004359830
1846464.07DFFA'protein_coding'412AEGain7.213EU AB ER1a100.00
1856474.07C1orf112'protein_coding'1046AEGain6.447EU ES AB E2a_E3a20.00
1866494.07HSP90AB1'protein_coding'1025AEGain5.591EU E3a_E4a0
1876504.07PMS1'protein_coding'2447AEGain5.564EU CE I1_AR40.00
1886514.07C8orf40'protein_coding'714AEGain5.255CE I2_AR80
1896524.07GOLGB1'protein_coding'1041AEGain4.854EU AB E3b_E4b0.00
1906544.07TUT1'protein_coding'1241AEGain9.584EU E15a_E16a66.67
1916624.06RP3-377D14.1'protein_coding'18121AEGain4.433EU ER8a0.00
1926634.06AGBL5'protein_coding'1137AEGain4.627EU AB E18_Da40.00
1936644.06SLC35F2'protein_coding'315AEGain4.192EU ES ER4b100.00
1946674.05STARD3NL'protein_coding'725AEGain12.396EU AB E1a_E2a33.33
1956704.05SUMO1'protein_coding'1232AEGain5.638EU ES AB E10_De20.00
1966734.04DNAJC17'protein_coding'111AEGain6.335EU AB E5_Da33.33
1976744.04AC124798.2'protein_coding'15DEGain16.480N/AAC124798.2N/A
1986834.03MSH2'protein_coding'1348AEGain4.727EU AB E1b_E2a50.00
1996844.03C10orf46'protein_coding'925AEGain6.432AB E10_Db0
2006854.03DOCK8'protein_coding'2085AEGain11.604EU ES ER3a33.33
2016874.03UGP2'protein_coding'3282AEGain9.957EU AB E2_Af33.33
2026894.02BAT1'protein_coding'3058AEGain12.103EU AB ER5b0
2036914.02CCT4'protein_coding'421AEGain6.205EU ES AB E1b_E2a33.33
2046944.02PLEKHG2'protein_coding'1032AEGain5.042AB E18_Aa0
2057004.01NUP133'protein_coding'640AEGain4.332EU E1a_E2a100.00
2067044.01PTOV1'protein_coding'214AEGain5.685EU AB IR E10_Aa0
2077064.00RPUSD3'protein_coding'1941AEGain11.875EU AB ER2v50.00
2087094.00TMBIM1'protein_coding'2253AEGain4.615EU ES AB E5a_E7b0.00
2097134.00CTBP1'protein_coding'315AEGain10.291AB E10_Da0
2107174.00MSH5'protein_coding'2878AEGain6.196EU ES AB E24a_E25a25.00
2117183.99SRPK2'protein_coding'1857AEGain4.938EU ES AB CE E26a_E28a25.00
2127283.98AKAP9'protein_coding'2089AEGain6.239EU AB E19_Dd0.00
2137303.98NOP58'protein_coding'1031AEGain5.505EU AB E1a_E2a33.33
2147313.98GNPAT'protein_coding'628AEGain4.692EU E1a_E2a100.00
2157323.98SLC20A2'protein_coding'111AEGain9.251CE I1_AR90
2167433.96TMEM69'protein_coding'25AEGain5.752EU ES E1a_E3a0.00
2177493.96EIF2C3'protein_coding'1036AEGain10.2918EU AB IR E13_Db0.00
2187523.96SUV420H1'protein_coding'1538AEGain6.009EU AB CE ER1c20.00
2197543.96SLC25A24'protein_coding'314DEGain15.560N/ASLC25A24N/A
2207683.94ZNF222'protein_coding'37AEGain4.691EU E3a_E4a0
2217693.94EPHB1'protein_coding'1448DEGain15.320N/AEPHB1N/A
2227713.93TMEM68'protein_coding'28AEGain5.871AB E6_Aa0
2237733.93RBM19'protein_coding'227AEGain5.913EU ER1a0.00
2247743.93NRIP1'protein_coding'48DEGain15.260N/ANRIP1N/A
2257773.93NR1H2'protein_coding'316AEGain11.954EU AB E3a_E4a50.00
2267823.92NUP160'protein_coding'442AEGain5.251EU E2a_E3a0
2277833.92CYTH2'protein_coding'1133AEGain9.173EU ES AB ER1c0.00
2287843.92RP4-604K5.2'protein_coding'717AEGain11.749EU ES AB ER1c33.33
2297903.92LAPTM5'protein_coding'415AEGain10.554EU ES AB E3a_E4a0.00
2307943.91STK36'protein_coding'1871AEGain9.005EU AB ER1c33.33
2317953.91INO80C'protein_coding'310AEGain5.771ES E1a_E7a0
2327993.91MDM2'protein_coding'2236AEGain12.475EU ES AB ER14c0.00
2338013.91ZBTB38'protein_coding'24DEGain14.990N/AZBTB38N/A
2348053.90SRCAP'protein_coding'1052AEGain5.985EU AB E26_Dc50.00
2358063.90USMG5'protein_coding'510AEGain3.683EU E5a_E6a50.00
2368093.90EXOC7'protein_coding'2161AEGain9.244EU AB E12_Ae0
2378103.90COX7B'protein_coding'37AEGain4.673EU AB E3a_E4a0.00
2388133.90AC092375.3'protein_coding'17AEGain5.981AB E6_Da0
2398193.89SUCLG1'protein_coding'1027AEGain4.303EU ES AB E9_Db100.00
2408223.89RPS2'protein_coding'17AEGain7.962EU ER3a100.00
2418263.88ASB1'protein_coding'923AEGain4.912EU CE I5_AR10
2428273.88ITGB3BP'protein_coding'1639AEGain9.0110EU ES AB E7b_E8a57.14
2438343.88ANAPC7'protein_coding'823AEGain5.964EU CE I8_AR30.00
2448373.88RABEPK'protein_coding'716AEGain5.802EU AB E5_Aa0
2458393.87COX7A2'protein_coding'818AEGain5.304EU ES E5a_E6a66.67
2468413.87RRN3P2'protein_coding'320AEGain5.052EU AB E2a_E3a0
2478423.87PGAP2'protein_coding'2959AEGain8.905EU AB E1_Da0.00
2488443.87RPS6KB1'protein_coding'834AEGain4.414EU AB E2_Da0.00
2498453.87OVCA2'protein_coding'12AEGain9.521AB E1_Da0
2508463.86CD99L2'protein_coding'1131AEGain9.002EU ER1b100.00
2518473.86TMEM116'protein_coding'315AEGain4.112EU E3a_E4a100.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1213.27IGLV2-23'IG_V_gene'24DELoss-9862.900N/AIGLV2-23N/A
2511.72RPS25'protein_coding'15AELoss-85.233EU E2a_E3a50.00
3611.16IGHV4-61'IG_V_gene'12DELoss-2288.740N/AIGHV4-61N/A
4910.79D87024.1'miRNA'11DELoss-1773.000N/AD87024.1N/A
51010.76IGLV2-5'pseudogene'11DELoss-1739.800N/AIGLV2-5N/A
6148.62IGHV4-31'IG_V_gene'12DELoss-392.630N/AIGHV4-31N/A
7158.57IGHV4-4'IG_V_gene'12DELoss-380.930N/AIGHV4-4N/A
8187.91RPS10'protein_coding'714AELoss-14.305EU E6a_E7a75.00
9197.80TEX261'protein_coding'821AELoss-18.472EU ES ER1f100.00
10207.53DDX41'protein_coding'117AELoss-26.971EU E2a_E3a0
11217.49ALPL'protein_coding'622DELoss-179.990N/AALPLN/A
12227.49PRRX1'protein_coding'714DELoss-179.510N/APRRX1N/A
13237.18IGHV4-39'IG_V_gene'12DELoss-145.130N/AIGHV4-39N/A
14247.17LHX2'protein_coding'311DELoss-143.580N/ALHX2N/A
15257.14KIFC1'protein_coding'519AELoss-26.624EU AB E4_Da0
16267.09RPS27'protein_coding'410AELoss-23.471EU E2a_E2b0
17277.00NEDD9'protein_coding'1021AELoss-15.532EU ES E8a_E12a100.00
18296.92FAM110A'protein_coding'47AELoss-13.462AB E3_Da0
19306.87UCRC'protein_coding'410AELoss-14.918EU ES AB E1b_E2a80.00
20316.82UBE2V1'protein_coding'2142AELoss-12.959EU AB ER14b66.67
21326.73RP11-325F22.2'processed_transcript'13DELoss-106.400N/ARP11-325F22.2N/A
22356.66PLS3'protein_coding'1039DELoss-101.030N/APLS3N/A
23366.65EMD'protein_coding'923AELoss-19.372EU AB E4_Dh0
24386.57C6orf62'protein_coding'39AELoss-17.341AB E1_Da0
25396.51WFDC2'protein_coding'813DELoss-91.270N/AWFDC2N/A
26416.42ATG4B'protein_coding'2970AELoss-14.048EU ES AB E4a_E4c25.00
27426.38RP11-295P9.2'protein_coding'515AELoss-16.774AB IR E9_Da0
28466.32XXbac-BPG246D15.6'processed_transcript'614AELoss-14.343ES AB E1a_E2a100.00
29476.32AC116353.1'protein_coding'224AELoss-17.007EU E2a_E3a66.67
30486.31SLC10A2'protein_coding'16DELoss-79.500N/ASLC10A2N/A
31496.29SH3GL2'protein_coding'317DELoss-78.220N/ASH3GL2N/A
32506.24TOMM7'protein_coding'714AELoss-13.021ES E1a_E3b0
33526.13ATG12'protein_coding'26AELoss-15.543EU AB E1_Da0
34536.13STRA13'protein_coding'38AELoss-9.593EU E3a_E4a100.00
35566.06EIF2S2'protein_coding'19AELoss-7.745EU E1a_E2a75.00
36586.02RPL29'protein_coding'917AELoss-6.962EU ES E2b_E3a100.00
37596.02COMMD3'protein_coding'2140AELoss-10.567EU ES AB E1a_E4b25.00
38615.98MRFAP1'protein_coding'38AELoss-30.632EU AB E1_Ad0
39625.97C20orf199'processed_transcript'810AELoss-10.315EU ES E2a_E6a75.00
40645.95ACAD8'protein_coding'211AELoss-14.083EU E1a_E2a0.00
41655.88PITPNM1'protein_coding'225AELoss-12.841EU E1a_E2a0
42665.87VPS33A'protein_coding'113AELoss-13.333EU E1a_E2a50.00
43685.84AIM2'protein_coding'417AELoss-8.972EU E10c_E11a100.00
44695.84ZRANB2'protein_coding'621AELoss-12.335EU E2a_E3a25.00
45705.82TCF12'protein_coding'527AELoss-39.045EU AB ENST0000034382766.67
46715.76RBBP9'protein_coding'412AELoss-28.663EU E1a_E2a100.00
47725.76WRB'protein_coding'1835AELoss-11.762EU ES E1a_E4a100.00
48735.76ZFAND1'protein_coding'18AELoss-9.162EU ER3a100.00
49745.74PARL'protein_coding'1026AELoss-15.392EU E1b_E2a100.00
50755.74UTS2'protein_coding'414AELoss-9.534EU AB E2a_E3a100.00
51775.73RPL7'protein_coding'926AELoss-2.823EU AB E7a_E8a0.00
52785.72TLK2'protein_coding'323AELoss-13.704EU E10a_E11a33.33
53795.71NGFRAP1'protein_coding'511DELoss-52.490N/ANGFRAP1N/A
54845.69BHLHE22'protein_coding'11DELoss-51.580N/ABHLHE22N/A
55855.69INPP5B'protein_coding'1342AELoss-11.833EU ER2c50.00
56865.68KIN'protein_coding'521AELoss-12.102EU E1a_E2a0.00
57885.65RP4-564F22.1'protein_coding'1129AELoss-10.403EU ES AB E1a_E2a0.00
58895.65AC018737.4'processed_transcript'513AELoss-11.532EU AB E2_Ad0
59905.64FAM118A'protein_coding'1847AELoss-9.401ES E4a_E7a0
60915.64NUDT16L1'protein_coding'25AELoss-9.871EU E1a_E2a0
61925.63CRNKL1'protein_coding'723AELoss-28.131EU E2e_E3a0
62955.61DALRD3'protein_coding'1641AELoss-9.684EU AB E3a_E3g0.00
63965.61C11orf9'protein_coding'438DELoss-48.740N/AC11orf9N/A
64975.60CYP27A1'protein_coding'519DELoss-48.340N/ACYP27A1N/A
65985.59RPL39'protein_coding'48AELoss-9.131ES E1c_E3a0
661005.58HLA-DQB1'protein_coding'919AELoss-8.273EU E2b_E3a100.00
671015.57STYXL1'protein_coding'1635AELoss-9.623EU E1a_E2a50.00
681025.57LUC7L'protein_coding'2148AELoss-11.718EU ES AB E1a_E1q66.67
691035.57DBNL'protein_coding'2764AELoss-7.427EU AB E2_Da50.00
701045.49SRC'protein_coding'1438AELoss-10.275EU ES E1a_E3a50.00
711055.49SLC5A6'protein_coding'1956AELoss-8.715EU ES AB CE E3_Aa100.00
721065.49FOXG1B'protein_coding'23DELoss-44.820N/AFOXG1BN/A
731085.47WDR45'protein_coding'3074AELoss-9.376EU AB E4a_E5a25.00
741095.46SNX13'protein_coding'1658AELoss-10.196EU AB E1_Da0.00
751115.44ZNF581'protein_coding'12AELoss-7.651EU E1a_E2a0
761155.40HELZ'protein_coding'133AELoss-20.982EU E3a_E4a100.00
771165.39BIN3'protein_coding'211AELoss-6.983EU E4a_E5a100.00
781185.39ECHDC3'protein_coding'614AELoss-8.001AB E1_Ac0
791205.38ISCA1'protein_coding'512AELoss-11.353EU ES E1a_E3a0.00
801215.38SOX5'protein_coding'521DELoss-41.660N/ASOX5N/A
811235.37NLRP2'protein_coding'415DELoss-41.390N/ANLRP2N/A
821245.37UGT2B17'protein_coding'16DELoss-41.330N/AUGT2B17N/A
831275.36CD79B'protein_coding'37AELoss-7.975EU E1a_E2b100.00
841285.36CCDC117'protein_coding'718AELoss-14.564EU AB E1_Db100.00
851295.35KIAA0748'protein_coding'315AELoss-25.114EU ES E1a_E3a66.67
861315.33QRICH1'protein_coding'1438AELoss-10.156EU ES AB E1c_E4a33.33
871325.33SNORA43'processed_transcript'410AELoss-10.733AB E5_Aa0
881345.33RPS15'protein_coding'14AELoss-9.651EU E3a_E4a0
891355.33PES1'protein_coding'1344AELoss-8.112EU E6a_E7a100.00
901375.32CNOT4'protein_coding'1236AELoss-9.584EU AB CE E1_Af0.00
911385.30CKS2'protein_coding'13AELoss-9.641EU E1a_E2a0
921405.29NDUFA3'protein_coding'1736AELoss-19.1910EU ES AB E4a_E4c71.43
931415.29HNF1B'protein_coding'313DELoss-39.140N/AHNF1BN/A
941435.26TNFSF10'protein_coding'820AELoss-7.383EU AB E1_Ag0.00
951445.25NUBP1'protein_coding'212AELoss-10.921EU E2a_E3a0
961475.23RPS7'protein_coding'922AELoss-11.217EU E2e_E2f50.00
971485.22STX16'protein_coding'2455AELoss-5.525EU AB E1_Db100.00
981505.21AC010619.2'protein_coding'15AELoss-9.642EU E2a_E3a0.00
991515.20TMEM161A'protein_coding'212AELoss-9.321EU E2a_E3a0
1001525.19WDR42A'protein_coding'1751AELoss-10.664EU AB E1b_E2b0
1011535.19RP11-457L23.1'pseudogene'11DELoss-36.420N/ARP11-457L23.1N/A
1021545.18DHFRL1'protein_coding'512AELoss-6.894EU AB E3_Da100.00
1031555.18MAT2A'protein_coding'1439AELoss-6.363EU ER1g0.00
1041565.16SARNP'protein_coding'214AELoss-9.863EU E2a_E3a50.00
1051575.15PPP2R5C'protein_coding'620AELoss-8.292EU AB E4a_E5a0
1061595.14CORO1B'protein_coding'416AELoss-8.813EU AB E1_Da0
1071605.14PI4KAP1'processed_transcript'834AELoss-8.053EU CE I3_AR20.00
1081625.12UBR7'protein_coding'211AELoss-8.251EU E1a_E2a0
1091635.11MAP7D2'protein_coding'832DELoss-34.580N/AMAP7D2N/A
1101645.11FRAS1'protein_coding'584DELoss-34.530N/AFRAS1N/A
1111655.11ODZ3'protein_coding'127DELoss-34.440N/AODZ3N/A
1121665.10RPL31'protein_coding'1122AELoss-5.665EU AB E1b_E2a33.33
1131675.10SUCNR1'protein_coding'13DELoss-34.230N/ASUCNR1N/A
1141685.10DAP3'protein_coding'2454AELoss-6.288EU AB E3a_E4a0.00
1151705.09NCRNA00081'processed_transcript'819AELoss-17.323EU ES AB E2a_E4a0.00
1161725.09TTC31'protein_coding'1750AELoss-9.133EU E2a_E3a0.00
1171735.09THOC2'protein_coding'2387AELoss-18.1510EU AB E2a_E3a62.50
1181745.09MTX1'protein_coding'619AELoss-8.257EU ES AB E6_Da50.00
1191765.09CD52'protein_coding'36AELoss-20.842ES AB E1a_E3a0
1201775.08ATG16L1'protein_coding'2060AELoss-6.505EU AB E5_Aa50.00
1211805.06MRPL20'protein_coding'614AELoss-6.275EU AB CE E1a_E2a100.00
1221815.05IDH1'protein_coding'1338AELoss-8.135EU ES AB E3b_E5d66.67
1231825.05RPL11'protein_coding'511AELoss-9.471EU E3a_E4a0
1241835.04PHF11'protein_coding'2044AELoss-7.334EU ES AB E1a_E4a0.00
1251855.04IGLV2-14'IG_V_gene'12DELoss-32.850N/AIGLV2-14N/A
1261865.04NPY'protein_coding'39DELoss-32.790N/ANPYN/A
1271885.03TNFRSF8'protein_coding'519DELoss-32.670N/ATNFRSF8N/A
1281895.03C15orf57'protein_coding'37AELoss-6.451AB E3_Da0
1291905.03COL4A5'protein_coding'762DELoss-32.560N/ACOL4A5N/A
1301925.01GGA2'protein_coding'117AELoss-6.792EU E1a_E2a0.00
1311945.00CHDH'protein_coding'313DELoss-32.010N/ACHDHN/A
1321955.00EIF4E'protein_coding'310AELoss-21.297EU ES AB E4a_E5a50.00
1331964.99LRCH3'protein_coding'1958AELoss-9.054ES AB CE E13_Aa0
1341994.98RPS13'protein_coding'16AELoss-5.372EU E3a_E4a100.00
1352004.97C6orf129'protein_coding'37AELoss-10.823EU AB E2a_E3a100.00
1362014.97C10orf54'protein_coding'415AELoss-7.562EU AB E1a_E2a0
1372024.97HN1'protein_coding'1224AELoss-7.483EU ES ER4a0.00
1382034.97NDUFB7'protein_coding'13AELoss-8.661EU E1a_E2a0
1392064.96AC100786.1'protein_coding'26AELoss-8.862EU E3a_E4a100.00
1402074.96TNFRSF11B'protein_coding'15DELoss-31.150N/ATNFRSF11BN/A
1412084.96GSTM4'protein_coding'1537AELoss-5.318EU AB E1_Ag50.00
1422094.96C9orf6'protein_coding'513AELoss-5.902EU ER1d100.00
1432104.96CCL22'protein_coding'13DELoss-31.022EU CCL220.00
1442114.95ACIN1'protein_coding'627AELoss-9.426EU ES E1a_E2a50.00
1452134.94CADM1'protein_coding'314DELoss-30.770N/ACADM1N/A
1462144.93FXYD2'protein_coding'38DELoss-30.460N/AFXYD2N/A
1472154.92RPL3'protein_coding'2248AELoss-8.698EU ES AB E4e_E6c0.00
1482164.92IL17RB'protein_coding'316DELoss-30.2314EU ES AB IR IL17RB25.00
1492174.91KIAA1191'protein_coding'410AELoss-9.502EU ES E1a_E2a0.00
1502194.89TASP1'protein_coding'822AELoss-8.131AB E2_Ab0
1512204.89CYBA'protein_coding'16AELoss-6.423EU E2a_E3a50.00
1522224.88BTN3A2'protein_coding'315AELoss-6.452EU ER2a100.00
1532244.87ACSL3'protein_coding'934AELoss-6.436EU ES AB E4a_E5a50.00
1542254.87PTPRK'protein_coding'2069DELoss-29.150N/APTPRKN/A
1552264.86TAF12'protein_coding'412AELoss-6.173EU AB E9_Aa100.00
1562274.86CELSR1'protein_coding'744DELoss-29.070N/ACELSR1N/A
1572284.86PSMB8'protein_coding'513AELoss-9.211EU E2a_E3a0
1582294.85TMEM111'protein_coding'517AELoss-8.762AB E2_Ad0
1592304.84PBK'protein_coding'18AELoss-9.163EU E1a_E2a50.00
1602314.84C14orf105'protein_coding'29DELoss-28.620N/AC14orf105N/A
1612324.84TRAPPC3'protein_coding'819AELoss-7.784EU ES AB E1a_E2b0.00
1622334.84DUS2L'protein_coding'219AELoss-8.171EU E2a_E3a0
1632344.84LMNA'protein_coding'2162AELoss-7.062AB E7_Da0
1642354.83SUV39H1'protein_coding'731AELoss-8.0810EU AB ER3c40.00
1652364.83POLR2I'protein_coding'16AELoss-6.514EU AB E2_Aa50.00
1662374.82COPS7B'protein_coding'2247AELoss-6.494EU AB CE I10_AR1100.00
1672384.82RPL24'protein_coding'616AELoss-5.134EU AB E2_Ab0.00
1682404.81IGHMBP2'protein_coding'115AELoss-8.002EU CE I8_AR40
1692414.81RAB9A'protein_coding'25AELoss-21.323EU ES E1a_E2a50.00
1702424.81PSMB9'protein_coding'720AELoss-6.662EU E4a_E4c100.00
1712434.80PRAF2'protein_coding'37AELoss-6.591EU ER1c0
1722444.80ROBO1'protein_coding'1664DELoss-27.790N/AROBO1N/A
1732454.80NLE1'protein_coding'626AELoss-9.312EU E1b_E2a100.00
1742464.79C19orf42'protein_coding'920AELoss-8.424ES AB E4a_E9a0.00
1752474.79PGS1'protein_coding'315AELoss-15.691EU E1a_E2a0
1762484.79KAT5'protein_coding'315AELoss-7.023EU E2a_E3a50.00
1772494.79KIAA0913'protein_coding'1552AELoss-7.151AB E21_Da0
1782504.79TP53TG1'processed_transcript'510AELoss-5.892EU E1a_E1c0.00
1792514.78TCEB2'protein_coding'410AELoss-9.392ES E2a_E4a100.00
1802524.78PTMA'protein_coding'1439AELoss-6.3710EU AB E3_Af50.00
1812534.78CUGBP1'protein_coding'619AELoss-16.033EU AB CE E15a_E16a0
1822554.78RAB8A'protein_coding'210AELoss-5.974EU E1a_E2a66.67
1832564.77AP4B1'protein_coding'1639AELoss-7.066EU AB CE E5_De0.00
1842574.77RFC5'protein_coding'824AELoss-6.713EU ES E1a_E3b50.00
1852584.77RPL13'protein_coding'821AELoss-8.853EU AB E1c_E1h0.00
1862614.76ZNF589'protein_coding'1024AELoss-6.493EU ES AB E2a_E5a0.00
1872634.75LDLR'protein_coding'218AELoss-7.122EU ES E1a_E2a0.00
1882644.75NFKBIL2'protein_coding'643AELoss-7.744EU AB E2a_E3a0.00
1892674.73DGCR6L'protein_coding'39AELoss-6.144EU AB ER2a100.00
1902684.73IMPDH2'protein_coding'1238AELoss-8.283EU E1a_E2a50.00
1912694.73BLVRB'protein_coding'15AELoss-8.071EU E1a_E2a0
1922704.73NVL'protein_coding'2664AELoss-6.345EU AB ER3a100.00
1932714.73CCDC49'protein_coding'110AELoss-6.921EU E1a_E2a0
1942724.73EXOC6B'protein_coding'937AELoss-8.533EU ES AB E8a_E10a0.00
1952744.72C21orf33'protein_coding'1128AELoss-8.467EU AB E1_Ag0.00
1962754.72ATP6V0E1'protein_coding'14AELoss-6.011EU E1a_E2a0
1972774.71ACOT8'protein_coding'1634AELoss-5.924EU ES AB E1a_E4b100.00
1982784.71USP5'protein_coding'222AELoss-8.733EU E1a_E2a0.00
1992794.71GUSBL2'processed_transcript'616AELoss-7.305EU ES E2b_E3a50.00
2002804.71NID1'protein_coding'326DELoss-26.180N/ANID1N/A
2012814.71CIT'protein_coding'555AELoss-8.422EU E2a_E3a0.00
2022824.71EPS8'protein_coding'121DELoss-26.080N/AEPS8N/A
2032834.70MMP7'protein_coding'16DELoss-26.070N/AMMP7N/A
2042844.70KIAA1324'protein_coding'1140DELoss-25.930N/AKIAA1324N/A
2052854.69BECN1'protein_coding'214AELoss-6.962EU E1a_E2a0.00
2062864.69ZNF740'protein_coding'28AELoss-8.391CE I2_AR10
2072874.69ZNF629'protein_coding'13AELoss-8.651EU E1a_E2a0
2082884.69ASNA1'protein_coding'29AELoss-4.503EU E1b_E2a100.00
2092904.68CXorf56'protein_coding'516AELoss-8.432EU E1a_E2a0.00
2102914.67C1orf55'protein_coding'315AELoss-8.565EU AB E1a_E2a33.33
2112934.67MPZL1'protein_coding'1126AELoss-7.572EU AB E3_Af0
2122964.66XPO1'protein_coding'3188AELoss-18.345EU AB E2_Ah0
2132994.65AC055876.3'protein_coding'229AELoss-13.332EU I28_SR20
2143014.64PRPF40B'protein_coding'632AELoss-6.0133EU AB IR CE E17_Aa16.67
2153024.64IVD'protein_coding'1132AELoss-5.963EU AB E1a_E2a0.00
2163034.64AC004086.1'protein_coding'28AELoss-6.312EU E1b_E2a0.00
2173044.64GPKOW'protein_coding'228AELoss-11.603EU ER1e100.00
2183054.64CCL4'protein_coding'36AELoss-6.803EU ES E1a_E2a50.00
2193064.63ZMYM6'protein_coding'1342AELoss-6.954EU ES E1a_E4b33.33
2203074.63CPSF3L'protein_coding'2577AELoss-7.434EU AB IR E4a_E4c0
2213084.63ZNF429'protein_coding'14AELoss-7.651EU E1a_E2a0
2223094.63FGR'protein_coding'827AELoss-5.651AB E3_Ac0
2233104.62NAT14'protein_coding'13AELoss-7.501AB E2_Da0
2243114.62B3GNTL1'protein_coding'113AELoss-8.151EU E2a_E3a0
2253134.62FAM21A'protein_coding'949AELoss-14.119EU AB E13a_E13b28.57
2263144.62RPL23A'protein_coding'718AELoss-6.156EU AB E3b_E4b50.00
2273154.62BIRC2'protein_coding'19AELoss-15.511EU E1a_E2a0
2283164.61AC007390.4'protein_coding'718AELoss-8.413EU E5a_E6a50.00
2293174.61VMA21'protein_coding'49AELoss-4.703EU E3a_E4a100.00
2303194.60HLA-DMA'protein_coding'1324AELoss-5.864EU ES E4a_E6a66.67
2313214.60SFRS2'protein_coding'49AELoss-7.521AB E1_Ac0
2323224.60RNF4'protein_coding'18AELoss-7.991EU E1a_E2a0
2333244.60OSBPL9'protein_coding'2347AELoss-16.538EU ES AB E8a_E10b40.00
2343264.58CALR'protein_coding'19AELoss-5.651EU E1a_E2a0
2353274.58EIF4B'protein_coding'520AELoss-9.024EU E2a_E3a33.33
2363284.58SMEK1'protein_coding'521AELoss-16.832AB E1_Ab0
2373294.58MTMR1'protein_coding'1641AELoss-7.762EU ES E2a_E6a0.00
2383304.57SAMD9L'protein_coding'917AELoss-8.225EU ES AB E1_Da50.00
2393314.57LYPLA2'protein_coding'1231AELoss-6.105EU E3a_E4a75.00
2403334.56TNFRSF1B'protein_coding'515AELoss-4.971EU E1a_E2a0
2413344.56LARP6'protein_coding'25DELoss-23.650N/ALARP6N/A
2423364.56TRAF5'protein_coding'826AELoss-6.004EU AB CE I2_AR3100.00
2433374.56SNRNP27'protein_coding'516AELoss-14.493EU E2a_E3a50.00
2443384.56DGUOK'protein_coding'1123AELoss-6.535ES E1a_E7a50.00
2453394.56PCOLCE2'protein_coding'1030DELoss-23.550N/APCOLCE2N/A
2463404.56LGALS1'protein_coding'717AELoss-14.194EU ES AB E3a_E6a100.00
2473414.55SMC2'protein_coding'635AELoss-11.084EU ES E1c_E3a100.00
2483424.55RP11-117D22.2'processed_transcript'12AELoss-6.551EU E1a_E2a0
2493434.55TOX'protein_coding'211DELoss-23.360N/ATOXN/A
2503444.54CLEC7A'protein_coding'1017AELoss-23.195EU AB E1a_E2a33.33
2513454.54GNAS'protein_coding'6199AELoss-6.372EU AB E11_Da0