Summary page for comparison: 'NBL11_Rel2_vs_NBL11_Rem1' (HS1041_vs_HS0499) - Project: NeuroEvolution


Download complete candidate list as tab delimited text file: NBL11_Rel2_vs_NBL11_Rem1.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 9,402 (of 49,867 possible genes)

DE Genes: 4,061

AE Genes: 7,684

Alternative Exon Usage (EU) Genes: 7,087

Alernative Exon Skipping (ES) Genes: 1,328

Alternative Exon Boundary (AB) Genes: 3,939

Intron Retention (IR) Genes: 409

Cryptic Exon (CE) Genes: 924


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.90RPL17'protein_coding'312AELoss-286.677EU ER6d50.00
2212.78RPL39'protein_coding'48AELoss-236.245EU AB ER3b66.67
3312.44SRP9'protein_coding'410AEGain63.615EU ES E1a_E2a100.00
4411.77CBX3'protein_coding'819AEGain73.103EU AB ER2b100.00
5511.64HNRNPH1'protein_coding'418AEGain178.7215EU ES AB E1a_E1d50.00
6611.60ZCCHC10'protein_coding'27AEGain45.593EU ES ER1b100.00
7711.54CAPZA2'protein_coding'1638AEGain52.7215EU ES AB E3_Ah70.00
8811.51TFAM'protein_coding'414AEGain46.123EU AB E1_Ad100.00
9911.10IGHV4-31'IG_V_gene'12DELoss-2194.880N/AIGHV4-31N/A
101011.07RPL5'protein_coding'724AEGain64.239EU AB ER1c83.33
111111.04RBM3'protein_coding'1433AEGain150.0519EU AB ER1e62.50
121211.04BZW1'protein_coding'1847AEGain101.3013EU ES AB ER2g66.67
131310.83VDAC2'protein_coding'1336AELoss-136.3225EU ES AB ER11b63.16
141410.79AC012652.3'lincRNA'27AEGain33.872EU ER1a100.00
151510.79EEF1A1'protein_coding'1131AELoss-71.2613EU AB ER6a22.22
161610.78BCRL4'protein_coding'211AELoss-560.122EU ER3a100.00
171710.72RPL22L1'protein_coding'918AEGain59.7811EU ES AB ER1f77.78
181810.71STX16'protein_coding'2455AEGain39.0118EU ES AB ER1g66.67
191910.49PBEF1'protein_coding'1436AEGain36.2418EU ES AB ER2f75.00
202010.24HLA-DQA1'protein_coding'1125AEGain162.4312EU AB ER4g75.00
212110.22C19orf42'protein_coding'920AEGain100.7814EU ES AB ER1d66.67
222210.20SR140'protein_coding'2478AEGain47.8214EU ES AB ER4e42.86
232310.14CD164'protein_coding'714AEGain25.005EU AB ER1b100.00
242410.11RPS4X'protein_coding'517AEGain110.5914EU AB ER2a75.00
252510.10PSMA2'protein_coding'723AEGain94.7413EU ES AB ER1e62.50
262610.07PDCD10'protein_coding'2156AEGain26.3314EU AB ER2g80.00
27279.98EIF1'protein_coding'615AEGain110.854EU AB ER1c100.00
28289.96SNRNP27'protein_coding'516AEGain42.398EU AB ER1c60.00
29299.91ESD'protein_coding'519AEGain57.888EU AB ER1b50.00
30309.90GTF3A'protein_coding'1026AEGain49.8110EU ES AB ER1c83.33
31319.88ZC3H11A'protein_coding'1243AEGain24.9111EU AB ER1e60.00
32329.86IGHV3-20'IG_V_gene'12DEGain929.250N/AIGHV3-20N/A
33339.80EIF2A'protein_coding'1750AEGain47.9913EU AB ER1l50.00
34349.79RPL4'protein_coding'418AEGain85.384EU ER1b33.33
35359.73METTL5'protein_coding'1025AEGain46.8512EU AB ER1g66.67
36369.71STMN1'protein_coding'1124AEGain202.877EU ES AB ER2c80.00
37379.66MRPL35'protein_coding'38AEGain61.507EU AB ER1b40.00
38389.63TANK'protein_coding'2561AEGain47.4715EU AB ER1c36.36
39399.62OSTC'protein_coding'27AEGain34.875EU ES AB ER1a66.67
40409.62MRPL42'protein_coding'49AEGain22.785EU ER2a100.00
41419.59CRBN'protein_coding'1436AEGain23.264EU AB ER1f100.00
42429.56TTC1'protein_coding'18AEGain67.863EU E1a_E2a50.00
43439.52CENPK'protein_coding'314AEGain20.632EU E1a_E2a100.00
44449.52NASP'protein_coding'1235AEGain89.4613EU AB ER2d100.00
45459.51NDUFA5'protein_coding'1125AEGain38.5710EU AB ER1f42.86
46469.49C20orf43'protein_coding'1028AEGain129.259EU AB ER1e80.00
47479.49SFRS6'protein_coding'39AEGain22.386EU ES AB ER1a100.00
48489.43TIMM17A'protein_coding'413AEGain72.126EU E1a_E2a80.00
49499.43RPS2P32'pseudogene'25AEGain43.272AB E1_Da0
50509.39FCF1'protein_coding'18AEGain28.614EU ER1a66.67
51519.33EIF3I'protein_coding'622AEGain222.947EU ER2d66.67
52529.28IGLV2-14'IG_V_gene'12DELoss-621.050N/AIGLV2-14N/A
53539.26ORC3L'protein_coding'630AEGain37.254EU ER1c33.33
54549.18NDUFA9'protein_coding'111AEGain80.533EU ER1a100.00
55559.18C16orf63'protein_coding'26AEGain18.522EU ER1b100.00
56569.15RPS6'protein_coding'514AEGain33.896EU ER1b80.00
57579.13RRM2'protein_coding'1232AEGain40.2610EU AB E1_Da33.33
58589.04OGT'protein_coding'1246AEGain33.158EU ES AB ER1c80.00
59599.03OXA1L'protein_coding'930AEGain32.5610EU AB ER1e50.00
60609.01BUB3'protein_coding'619AEGain63.5614EU AB ER1b44.44
61619.00HMGB2'protein_coding'37AEGain30.926EU AB ER1a75.00
62628.99SRPK1'protein_coding'621AEGain51.826EU ER1c60.00
63638.97DDX17'protein_coding'1640AEGain23.459EU ES AB ER2d75.00
64648.95EEF1B2'protein_coding'1128AEGain241.5316EU AB E1_Aj50.00
65658.93NUP107'protein_coding'228AEGain30.739EU ER1a62.50
66668.93HSP90AA1'protein_coding'418AEGain26.723EU ER3b100.00
67678.93UFM1'protein_coding'719AEGain9.768EU ES AB ER1d60.00
68688.91GSPT1'protein_coding'419AEGain23.677EU AB ER2a75.00
69698.90RAD23B'protein_coding'621AEGain32.596EU AB ER1d75.00
70708.86HMGN1'protein_coding'2146AEGain42.0238EU AB ER3i66.67
71718.85VPS35'protein_coding'117AEGain30.965EU E1a_E2a100.00
72728.84CCT3'protein_coding'1846AEGain82.5215EU AB ER2c80.00
73738.84MED21'protein_coding'14AEGain25.895EU ER1a100.00
74748.84HNRNPA3'protein_coding'1137AEGain25.3842EU ES AB ER1d50.00
75758.80SAR1B'protein_coding'414AEGain21.733EU AB ER1b100.00
76768.79IGKV4-1'IG_V_gene'12DEGain443.390N/AIGKV4-1N/A
77778.79PMS1'protein_coding'2447AEGain21.0815EU AB CE ER1i50.00
78788.77BCCIP'protein_coding'716AEGain31.413EU AB ER1a0.00
79798.76RAB18'protein_coding'826AEGain22.8210EU ES AB ER1d60.00
80808.75GTPBP10'protein_coding'1333AEGain20.355EU AB ER7h100.00
81818.74EIF4A2'protein_coding'2961AEGain29.9516EU AB ER1j50.00
82828.73ATPIF1'protein_coding'610AEGain53.159EU AB CE E1_Ad20.00
83838.71CDC123'protein_coding'931AEGain56.309EU AB E1_Af66.67
84848.70MRPS22'protein_coding'1542AEGain24.0923EU ES AB IR ER8g86.67
85858.69THUMPD3'protein_coding'1028AEGain24.017EU AB ER1e0.00
86868.68TRA2B'protein_coding'1847AEGain43.4934EU ES AB CE ER1e63.16
87878.67STAMBP'protein_coding'1338AEGain17.2812EU ES AB CE ER1d66.67
88888.66DRAM2'protein_coding'1132AEGain29.7521EU ES AB CE ENST0000046144944.44
89898.62RPL31'protein_coding'1122AEGain121.1725EU ES AB ER1h68.75
90908.62SP140'protein_coding'1263AEGain43.5315EU ES AB ER1e45.45
91918.62SPCS1'protein_coding'511AEGain24.656EU AB ER2c66.67
92928.60SUB1'protein_coding'15AEGain24.242EU E1a_E2a100.00
93938.60SAT1'protein_coding'1028AEGain29.509EU AB ER1a60.00
94948.59ACTR2'protein_coding'418AEGain23.918EU AB ER1b100.00
95958.58PHF11'protein_coding'2044AEGain13.696EU ES AB ER1e50.00
96968.57ZMAT2'protein_coding'16AEGain45.624EU E1a_E2a66.67
97978.55GYG1'protein_coding'1848AEGain16.737EU AB ER1h75.00
98988.53RNF114'protein_coding'311AEGain24.677EU AB ER1a80.00
99998.52HP1BP3'protein_coding'1946AEGain31.4014EU ES AB E1_Ac44.44
1001008.51NUDT5'protein_coding'927AEGain45.4222EU AB ER1e66.67
1011018.51GOSR1'protein_coding'923AEGain29.778EU ES ER1b57.14
1021028.49GDI2'protein_coding'1128AEGain23.916EU ES AB E3_Ad100.00
1031038.49SAMD9L'protein_coding'917AEGain16.603EU AB ER1c100.00
1041048.49C12orf47'processed_transcript'48AEGain28.045EU AB ER1b100.00
1051058.48HEATR1'protein_coding'552AEGain35.8816EU ES ER1a66.67
1061068.47AC018462.2'processed_transcript'211AEGain32.425EU AB IR E2_Aa0.00
1071078.47SNW1'protein_coding'215AEGain22.487EU ER1a83.33
1081088.46FXC1'protein_coding'310AEGain17.366EU AB ER1c100.00
1091098.45C15orf57'protein_coding'37AEGain26.382EU ER1b100.00
1101108.44RPS15A'protein_coding'27AEGain152.605EU ER1a100.00
1111118.41NCBP2'protein_coding'1330AEGain30.0911EU AB ER1d50.00
1121128.41COMMD3'protein_coding'2140AEGain42.3030EU ES AB ER1g55.56
1131138.40HMGN2'protein_coding'928AEGain27.887EU AB ER1f80.00
1141148.38CALM2'protein_coding'1334AEGain44.5214EU AB ER1b50.00
1151158.38PSMD5'protein_coding'925AEGain18.506EU AB ER1d100.00
1161168.36IFRD1'protein_coding'1748AEGain23.938EU AB E6_Ad20.00
1171178.34PCNP'protein_coding'820AEGain18.174EU AB CE ER1e100.00
1181188.31NUPL2'protein_coding'1229AEGain29.8528EU ES AB ER1d57.14
1191198.30RPL35A'protein_coding'920AEGain178.2310EU ES AB ER1e62.50
1201208.29SKA2'protein_coding'25AEGain30.083EU E1a_E2a50.00
1211218.29ARF4'protein_coding'922AEGain13.8713EU AB ER2e75.00
1221228.28LSM5'protein_coding'1021AEGain15.8416EU ES AB ER2d83.33
1231238.27CLTC'protein_coding'1052AEGain22.233EU AB E1_Ab0.00
1241248.27RPS7'protein_coding'922AEGain158.5514EU AB ER1d77.78
1251258.27BRP44L'protein_coding'615AEGain43.9716EU AB CE E1_Ab60.00
1261268.26IL6ST'protein_coding'826AEGain16.683EU AB E1a_E2a100.00
1271278.26SELT'protein_coding'924AEGain26.3810EU ES AB E2_Ae71.43
1281288.26YWHAB'protein_coding'719AEGain22.264EU ES ER1d100.00
1291298.25FAS'protein_coding'1929AEGain16.5613EU ES AB IR E2_Ad83.33
1301308.25FNTB'protein_coding'421AEGain31.6818EU AB ER1b30.77
1311318.25C20orf30'protein_coding'1017AEGain14.826EU AB ER1c100.00
1321328.23RSRC1'protein_coding'1436AEGain14.3715EU AB CE E3_Ae87.50
1331338.23THOC7'protein_coding'822AEGain13.863EU ES E1a_E5c100.00
1341348.21RNF181'protein_coding'616AELoss-10.606EU AB E1a_E2a100.00
1351358.21DIMT1L'protein_coding'112AEGain21.633EU E1a_E2a50.00
1361368.20BTK'protein_coding'1647AEGain37.074EU AB ER1d50.00
1371378.19MELK'protein_coding'523AEGain15.765EU ES AB ER1b66.67
1381388.18ATF2'protein_coding'2240AEGain23.9712EU AB ER2d60.00
1391398.18ZWINT'protein_coding'1138AEGain73.3620EU AB ER1f82.35
1401408.17MCM10'protein_coding'935AEGain38.827EU ER1c66.67
1411418.17PPIA'protein_coding'1023AEGain358.518EU ES AB ER1c40.00
1421428.12HNRNPH2'protein_coding'48AEGain29.474EU ER1b66.67
1431438.12PNRC1'protein_coding'36AEGain16.566EU ES AB ER1a66.67
1441448.11ARL5A'protein_coding'824AEGain7.0510EU ES AB CE ER1e57.14
1451458.11RPS13'protein_coding'16AEGain159.196EU ER1a60.00
1461468.07HMGB1'protein_coding'1227AEGain22.6018EU ES AB ER3c50.00
1471478.06NUP35'protein_coding'1027AEGain18.8312EU AB E5_Ae83.33
1481488.05HSBP1'protein_coding'14AEGain15.844EU ER1a100.00
1491498.04SEPT7'protein_coding'1433AEGain33.307EU ES AB ER1d40.00
1501508.02MAT2A'protein_coding'1439AEGain103.6211EU ES AB ER1c44.44
1511518.02MTO1'protein_coding'1338AEGain17.4810EU AB ER1e75.00
1521528.02PFDN4'protein_coding'515AEGain28.778EU ES AB E1a_E4a20.00
1531538.02AL035420.2'lincRNA'12AEGain23.821AB E2_Aa0
1541548.01SNHG5'processed_transcript'1020AEGain34.7215EU AB ER1b63.64
1551557.98ITGB1'protein_coding'2258AEGain11.328EU AB ER2d80.00
1561567.98MTF2'protein_coding'1341AEGain15.539EU AB CE ER1f75.00
1571577.97TMEM167A'protein_coding'14AEGain14.916EU E1a_E2a100.00
1581587.97ENTPD1'protein_coding'1338AEGain15.946EU ES AB ER4b66.67
1591597.95SNAPC3'protein_coding'927AEGain20.7815EU AB ER1d37.50
1601607.95C10orf32'protein_coding'618AEGain12.798EU AB ER1e80.00
1611617.94ARPC3'protein_coding'925AEGain37.558EU ES AB ER2d60.00
1621627.94HLA-C'protein_coding'1227AEGain84.998EU ES AB E1_Ah25.00
1631637.93IFI44L'protein_coding'1131AEGain29.8912EU AB ER2e33.33
1641647.93TXNDC12'protein_coding'414AEGain12.414EU AB E1_Ab100.00
1651657.90PIAS1'protein_coding'114AEGain36.201EU E1a_E2a0
1661667.90SH3BGRL'protein_coding'411AEGain16.384EU ES AB E1_Ab100.00
1671677.89KHDC1'protein_coding'924AEGain29.503AB E3_Da0
1681687.89GTF3C3'protein_coding'1039AEGain13.537EU ES AB ER1c75.00
1691697.88SFRS18'protein_coding'1032AEGain19.4813EU AB ER1b60.00
1701707.86GAPDH'protein_coding'1543AEGain90.029EU AB ER1g85.71
1711717.86ATP5F1'protein_coding'619AEGain82.759EU AB ER1f66.67
1721727.86CACNB4'protein_coding'934AELoss-24.3724EU ES AB IR I1645.45
1731737.85C1D'protein_coding'721AEGain13.6624EU ES AB ER2f77.78
1741747.85RPL36AL'protein_coding'12AEGain43.372EU ER1a100.00
1751757.84C17orf45'protein_coding'2044AEGain86.9425EU AB ER1o61.11
1761767.83RPS12'protein_coding'310AEGain82.434EU E1a_E2a100.00
1771777.83SAP18'protein_coding'818AEGain50.2815EU AB E1_Ab66.67
1781787.82CCT8'protein_coding'1134AEGain26.245EU AB ER1c50.00
1791797.81UQCC'protein_coding'2854AEGain20.5823EU ES AB CE E1a_E5a75.00
1801807.79PSMA1'protein_coding'717AEGain28.152EU ER3a0.00
1811817.79VPS29'protein_coding'39AEGain15.489EU ES AB CE ER1b75.00
1821827.77RTCD1'protein_coding'521AEGain12.377EU AB ER1e100.00
1831837.77ECHDC1'protein_coding'2146AEGain20.2017EU ES AB ER5a70.00
1841847.76HNRNPA1'protein_coding'314AEGain63.508EU ER3a57.14
1851857.76RAD51C'protein_coding'1232AEGain30.3211EU ES AB ER1f37.50
1861867.75HTATIP2'protein_coding'59AEGain20.084EU ER1c100.00
1871877.75TMCO1'protein_coding'621AEGain21.477EU AB E1_Af50.00
1881887.74LSM8'protein_coding'410AEGain15.639EU AB ER1c75.00
1891897.74AC007390.4'protein_coding'718AEGain26.347EU ES AB E1a_E5a60.00
1901907.74C12orf5'protein_coding'16AEGain23.152EU ER1a100.00
1911917.73DNAJC24'protein_coding'27AEGain13.093EU E1a_E2a100.00
1921927.73RPL22'protein_coding'820AEGain33.8315EU AB ER5b50.00
1931937.73C2orf43'protein_coding'1028AEGain12.096EU AB ER1f75.00
1941947.72GHITM'protein_coding'316AEGain40.916EU AB E1_Ac75.00
1951957.71PCNA'protein_coding'28AEGain57.954EU AB ENST00000379143100.00
1961967.71PRR3'protein_coding'816AEGain20.527EU AB ER2f66.67
1971977.70STK3'protein_coding'820AEGain13.398EU AB ER1c75.00
1981987.70DAPP1'protein_coding'19AEGain17.204EU E1a_E2a100.00
1991997.70ANAPC10'protein_coding'26AEGain20.854EU AB ER1b50.00
2002007.69SLC25A5'protein_coding'410AEGain185.375EU ES AB ER1b33.33
2012017.69EIF3M'protein_coding'212AEGain15.642EU ER1b0.00
2022027.67TTC14'protein_coding'1234AEGain24.8721EU ES AB ER1e58.33
2032037.67OSBPL9'protein_coding'2347AEGain23.9513EU ES AB CE ER8d44.44
2042047.67CHCHD7'protein_coding'58AEGain82.1910EU ES AB ENST0000035531585.71
2052057.67C21orf51'protein_coding'818AEGain29.297EU ES ER1c50.00
2062067.66AC025647.2'protein_coding'14AEGain30.663EU ER1a50.00
2072077.66CWC15'protein_coding'18AEGain32.967EU ER1a66.67
2082087.66MOBKL1B'protein_coding'1023AEGain29.475EU ES ER2c50.00
2092097.65XRCC5'protein_coding'1350AEGain27.297EU ES AB E4_Ag75.00
2102107.65SSR1'protein_coding'1032AEGain8.366EU AB ER3b75.00
2112117.64PPA1'protein_coding'417AEGain37.213EU ER2a100.00
2122127.62FBXO28'protein_coding'38AEGain13.985EU AB ER1b66.67
2132137.61ACO2'protein_coding'833AEGain162.2812EU ES AB ER1b57.14
2142147.60UBQLN1'protein_coding'213AEGain26.403EU AB E1_Ab0.00
2152157.60TNPO1'protein_coding'530AEGain14.655EU AB E1_Ac33.33
2162167.59RPL13'protein_coding'821AEGain237.078EU ER1e71.43
2172177.59SUCLA2'protein_coding'1233AEGain13.194EU AB ER1c100.00
2182187.59TMSB4X'protein_coding'510AEGain152.464EU ER1c66.67
2192197.58CDC42'protein_coding'717AEGain39.826EU ES ER1c60.00
2202207.58ATP5O'protein_coding'1129AEGain148.6711EU AB ER1b71.43
2212217.58SLC25A46'protein_coding'313AEGain12.048EU AB CE ER1c100.00
2222227.57APOL1'protein_coding'1632AEGain9.827EU AB E1_Ah100.00
2232237.55PSMD6'protein_coding'1227AEGain26.1313EU AB ER2f62.50
2242247.55UBE2A'protein_coding'513AEGain11.676EU E1a_E2a80.00
2252257.54GBAS'protein_coding'1131AEGain14.617EU AB E2_Ac40.00
2262267.54TARDBP'protein_coding'1233AEGain26.0713EU AB ER2d25.00
2272277.54NAA25'protein_coding'225AEGain16.511EU ER1a0
2282287.54C6orf162'protein_coding'26AEGain16.533EU ES E1a_E3a50.00
2292297.54NSMCE1'protein_coding'211AEGain38.235EU ER1b75.00
2302307.52SURF4'protein_coding'617AEGain27.014EU AB E1_Ac50.00
2312317.52ZMYND8'protein_coding'1650AEGain69.4723EU ES AB IR CE ER1g50.00
2322327.52RPL26'protein_coding'27AEGain85.379EU AB E1a_E2a71.43
2332337.52RBBP4'protein_coding'1441AEGain16.9514EU ES AB CE ER1a71.43
2342347.52RPP14'protein_coding'1334AEGain27.0814EU ES AB ER1d30.00
2352357.52CNOT7'protein_coding'210AEGain17.482EU AB E1_Ab0
2362367.50UBA3'protein_coding'1133AEGain11.049EU AB ER1e85.71
2372377.49AC096663.2'pseudogene'24AELoss-24.083EU AB E1_Ab0
2382387.49D87015.1'lincRNA'510DELoss-180.370N/AD87015.1N/A
2392397.49CAPZA1'protein_coding'723AEGain19.516EU ES AB E1a_E4a50.00
2402407.49AK2'protein_coding'1026AEGain52.0212EU AB ER1e85.71
2412417.48ITGB1BP1'protein_coding'2147AEGain39.4126EU ES AB CE ER1f76.92
2422427.48CCDC126'protein_coding'921AEGain12.383EU AB ER2b100.00
2432437.48POLE3'protein_coding'410AEGain40.386EU AB ER2c75.00
2442447.47COX7A2L'protein_coding'1123AEGain100.8214EU ES AB E2_Ae55.56
2452457.45EXOC4'protein_coding'2461AEGain12.843EU ER1b50.00
2462467.42SEC61G'protein_coding'717AEGain85.9912EU AB ER2e66.67
2472477.42VAMP7'protein_coding'823AEGain14.437EU AB ER1d100.00
2482487.42MRFAP1'protein_coding'38AEGain44.1110EU AB ER1c50.00
2492497.41ARL6IP6'protein_coding'616AEGain10.8110EU ES AB ER1f83.33
2502507.41MCM7'protein_coding'1540AEGain93.144EU AB ER1c100.00
2512517.41STX7'protein_coding'622AEGain18.155EU ER1b50.00


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.90RPL17'protein_coding'312AELoss-286.677EU ER6d50.00
2212.78RPL39'protein_coding'48AELoss-236.245EU AB ER3b66.67
3312.44SRP9'protein_coding'410AEGain63.615EU ES E1a_E2a100.00
4411.77CBX3'protein_coding'819AEGain73.103EU AB ER2b100.00
5511.64HNRNPH1'protein_coding'418AEGain178.7215EU ES AB E1a_E1d50.00
6611.60ZCCHC10'protein_coding'27AEGain45.593EU ES ER1b100.00
7711.54CAPZA2'protein_coding'1638AEGain52.7215EU ES AB E3_Ah70.00
8811.51TFAM'protein_coding'414AEGain46.123EU AB E1_Ad100.00
91011.07RPL5'protein_coding'724AEGain64.239EU AB ER1c83.33
101111.04RBM3'protein_coding'1433AEGain150.0519EU AB ER1e62.50
111211.04BZW1'protein_coding'1847AEGain101.3013EU ES AB ER2g66.67
121310.83VDAC2'protein_coding'1336AELoss-136.3225EU ES AB ER11b63.16
131410.79AC012652.3'lincRNA'27AEGain33.872EU ER1a100.00
141510.79EEF1A1'protein_coding'1131AELoss-71.2613EU AB ER6a22.22
151610.78BCRL4'protein_coding'211AELoss-560.122EU ER3a100.00
161710.72RPL22L1'protein_coding'918AEGain59.7811EU ES AB ER1f77.78
171810.71STX16'protein_coding'2455AEGain39.0118EU ES AB ER1g66.67
181910.49PBEF1'protein_coding'1436AEGain36.2418EU ES AB ER2f75.00
192010.24HLA-DQA1'protein_coding'1125AEGain162.4312EU AB ER4g75.00
202110.22C19orf42'protein_coding'920AEGain100.7814EU ES AB ER1d66.67
212210.20SR140'protein_coding'2478AEGain47.8214EU ES AB ER4e42.86
222310.14CD164'protein_coding'714AEGain25.005EU AB ER1b100.00
232410.11RPS4X'protein_coding'517AEGain110.5914EU AB ER2a75.00
242510.10PSMA2'protein_coding'723AEGain94.7413EU ES AB ER1e62.50
252610.07PDCD10'protein_coding'2156AEGain26.3314EU AB ER2g80.00
26279.98EIF1'protein_coding'615AEGain110.854EU AB ER1c100.00
27289.96SNRNP27'protein_coding'516AEGain42.398EU AB ER1c60.00
28299.91ESD'protein_coding'519AEGain57.888EU AB ER1b50.00
29309.90GTF3A'protein_coding'1026AEGain49.8110EU ES AB ER1c83.33
30319.88ZC3H11A'protein_coding'1243AEGain24.9111EU AB ER1e60.00
31339.80EIF2A'protein_coding'1750AEGain47.9913EU AB ER1l50.00
32349.79RPL4'protein_coding'418AEGain85.384EU ER1b33.33
33359.73METTL5'protein_coding'1025AEGain46.8512EU AB ER1g66.67
34369.71STMN1'protein_coding'1124AEGain202.877EU ES AB ER2c80.00
35379.66MRPL35'protein_coding'38AEGain61.507EU AB ER1b40.00
36389.63TANK'protein_coding'2561AEGain47.4715EU AB ER1c36.36
37399.62OSTC'protein_coding'27AEGain34.875EU ES AB ER1a66.67
38409.62MRPL42'protein_coding'49AEGain22.785EU ER2a100.00
39419.59CRBN'protein_coding'1436AEGain23.264EU AB ER1f100.00
40429.56TTC1'protein_coding'18AEGain67.863EU E1a_E2a50.00
41439.52CENPK'protein_coding'314AEGain20.632EU E1a_E2a100.00
42449.52NASP'protein_coding'1235AEGain89.4613EU AB ER2d100.00
43459.51NDUFA5'protein_coding'1125AEGain38.5710EU AB ER1f42.86
44469.49C20orf43'protein_coding'1028AEGain129.259EU AB ER1e80.00
45479.49SFRS6'protein_coding'39AEGain22.386EU ES AB ER1a100.00
46489.43TIMM17A'protein_coding'413AEGain72.126EU E1a_E2a80.00
47499.43RPS2P32'pseudogene'25AEGain43.272AB E1_Da0
48509.39FCF1'protein_coding'18AEGain28.614EU ER1a66.67
49519.33EIF3I'protein_coding'622AEGain222.947EU ER2d66.67
50539.26ORC3L'protein_coding'630AEGain37.254EU ER1c33.33
51549.18NDUFA9'protein_coding'111AEGain80.533EU ER1a100.00
52559.18C16orf63'protein_coding'26AEGain18.522EU ER1b100.00
53569.15RPS6'protein_coding'514AEGain33.896EU ER1b80.00
54579.13RRM2'protein_coding'1232AEGain40.2610EU AB E1_Da33.33
55589.04OGT'protein_coding'1246AEGain33.158EU ES AB ER1c80.00
56599.03OXA1L'protein_coding'930AEGain32.5610EU AB ER1e50.00
57609.01BUB3'protein_coding'619AEGain63.5614EU AB ER1b44.44
58619.00HMGB2'protein_coding'37AEGain30.926EU AB ER1a75.00
59628.99SRPK1'protein_coding'621AEGain51.826EU ER1c60.00
60638.97DDX17'protein_coding'1640AEGain23.459EU ES AB ER2d75.00
61648.95EEF1B2'protein_coding'1128AEGain241.5316EU AB E1_Aj50.00
62658.93NUP107'protein_coding'228AEGain30.739EU ER1a62.50
63668.93HSP90AA1'protein_coding'418AEGain26.723EU ER3b100.00
64678.93UFM1'protein_coding'719AEGain9.768EU ES AB ER1d60.00
65688.91GSPT1'protein_coding'419AEGain23.677EU AB ER2a75.00
66698.90RAD23B'protein_coding'621AEGain32.596EU AB ER1d75.00
67708.86HMGN1'protein_coding'2146AEGain42.0238EU AB ER3i66.67
68718.85VPS35'protein_coding'117AEGain30.965EU E1a_E2a100.00
69728.84CCT3'protein_coding'1846AEGain82.5215EU AB ER2c80.00
70738.84MED21'protein_coding'14AEGain25.895EU ER1a100.00
71748.84HNRNPA3'protein_coding'1137AEGain25.3842EU ES AB ER1d50.00
72758.80SAR1B'protein_coding'414AEGain21.733EU AB ER1b100.00
73778.79PMS1'protein_coding'2447AEGain21.0815EU AB CE ER1i50.00
74788.77BCCIP'protein_coding'716AEGain31.413EU AB ER1a0.00
75798.76RAB18'protein_coding'826AEGain22.8210EU ES AB ER1d60.00
76808.75GTPBP10'protein_coding'1333AEGain20.355EU AB ER7h100.00
77818.74EIF4A2'protein_coding'2961AEGain29.9516EU AB ER1j50.00
78828.73ATPIF1'protein_coding'610AEGain53.159EU AB CE E1_Ad20.00
79838.71CDC123'protein_coding'931AEGain56.309EU AB E1_Af66.67
80848.70MRPS22'protein_coding'1542AEGain24.0923EU ES AB IR ER8g86.67
81858.69THUMPD3'protein_coding'1028AEGain24.017EU AB ER1e0.00
82868.68TRA2B'protein_coding'1847AEGain43.4934EU ES AB CE ER1e63.16
83878.67STAMBP'protein_coding'1338AEGain17.2812EU ES AB CE ER1d66.67
84888.66DRAM2'protein_coding'1132AEGain29.7521EU ES AB CE ENST0000046144944.44
85898.62RPL31'protein_coding'1122AEGain121.1725EU ES AB ER1h68.75
86908.62SP140'protein_coding'1263AEGain43.5315EU ES AB ER1e45.45
87918.62SPCS1'protein_coding'511AEGain24.656EU AB ER2c66.67
88928.60SUB1'protein_coding'15AEGain24.242EU E1a_E2a100.00
89938.60SAT1'protein_coding'1028AEGain29.509EU AB ER1a60.00
90948.59ACTR2'protein_coding'418AEGain23.918EU AB ER1b100.00
91958.58PHF11'protein_coding'2044AEGain13.696EU ES AB ER1e50.00
92968.57ZMAT2'protein_coding'16AEGain45.624EU E1a_E2a66.67
93978.55GYG1'protein_coding'1848AEGain16.737EU AB ER1h75.00
94988.53RNF114'protein_coding'311AEGain24.677EU AB ER1a80.00
95998.52HP1BP3'protein_coding'1946AEGain31.4014EU ES AB E1_Ac44.44
961008.51NUDT5'protein_coding'927AEGain45.4222EU AB ER1e66.67
971018.51GOSR1'protein_coding'923AEGain29.778EU ES ER1b57.14
981028.49GDI2'protein_coding'1128AEGain23.916EU ES AB E3_Ad100.00
991038.49SAMD9L'protein_coding'917AEGain16.603EU AB ER1c100.00
1001048.49C12orf47'processed_transcript'48AEGain28.045EU AB ER1b100.00
1011058.48HEATR1'protein_coding'552AEGain35.8816EU ES ER1a66.67
1021068.47AC018462.2'processed_transcript'211AEGain32.425EU AB IR E2_Aa0.00
1031078.47SNW1'protein_coding'215AEGain22.487EU ER1a83.33
1041088.46FXC1'protein_coding'310AEGain17.366EU AB ER1c100.00
1051098.45C15orf57'protein_coding'37AEGain26.382EU ER1b100.00
1061108.44RPS15A'protein_coding'27AEGain152.605EU ER1a100.00
1071118.41NCBP2'protein_coding'1330AEGain30.0911EU AB ER1d50.00
1081128.41COMMD3'protein_coding'2140AEGain42.3030EU ES AB ER1g55.56
1091138.40HMGN2'protein_coding'928AEGain27.887EU AB ER1f80.00
1101148.38CALM2'protein_coding'1334AEGain44.5214EU AB ER1b50.00
1111158.38PSMD5'protein_coding'925AEGain18.506EU AB ER1d100.00
1121168.36IFRD1'protein_coding'1748AEGain23.938EU AB E6_Ad20.00
1131178.34PCNP'protein_coding'820AEGain18.174EU AB CE ER1e100.00
1141188.31NUPL2'protein_coding'1229AEGain29.8528EU ES AB ER1d57.14
1151198.30RPL35A'protein_coding'920AEGain178.2310EU ES AB ER1e62.50
1161208.29SKA2'protein_coding'25AEGain30.083EU E1a_E2a50.00
1171218.29ARF4'protein_coding'922AEGain13.8713EU AB ER2e75.00
1181228.28LSM5'protein_coding'1021AEGain15.8416EU ES AB ER2d83.33
1191238.27CLTC'protein_coding'1052AEGain22.233EU AB E1_Ab0.00
1201248.27RPS7'protein_coding'922AEGain158.5514EU AB ER1d77.78
1211258.27BRP44L'protein_coding'615AEGain43.9716EU AB CE E1_Ab60.00
1221268.26IL6ST'protein_coding'826AEGain16.683EU AB E1a_E2a100.00
1231278.26SELT'protein_coding'924AEGain26.3810EU ES AB E2_Ae71.43
1241288.26YWHAB'protein_coding'719AEGain22.264EU ES ER1d100.00
1251298.25FAS'protein_coding'1929AEGain16.5613EU ES AB IR E2_Ad83.33
1261308.25FNTB'protein_coding'421AEGain31.6818EU AB ER1b30.77
1271318.25C20orf30'protein_coding'1017AEGain14.826EU AB ER1c100.00
1281328.23RSRC1'protein_coding'1436AEGain14.3715EU AB CE E3_Ae87.50
1291338.23THOC7'protein_coding'822AEGain13.863EU ES E1a_E5c100.00
1301348.21RNF181'protein_coding'616AELoss-10.606EU AB E1a_E2a100.00
1311358.21DIMT1L'protein_coding'112AEGain21.633EU E1a_E2a50.00
1321368.20BTK'protein_coding'1647AEGain37.074EU AB ER1d50.00
1331378.19MELK'protein_coding'523AEGain15.765EU ES AB ER1b66.67
1341388.18ATF2'protein_coding'2240AEGain23.9712EU AB ER2d60.00
1351398.18ZWINT'protein_coding'1138AEGain73.3620EU AB ER1f82.35
1361408.17MCM10'protein_coding'935AEGain38.827EU ER1c66.67
1371418.17PPIA'protein_coding'1023AEGain358.518EU ES AB ER1c40.00
1381428.12HNRNPH2'protein_coding'48AEGain29.474EU ER1b66.67
1391438.12PNRC1'protein_coding'36AEGain16.566EU ES AB ER1a66.67
1401448.11ARL5A'protein_coding'824AEGain7.0510EU ES AB CE ER1e57.14
1411458.11RPS13'protein_coding'16AEGain159.196EU ER1a60.00
1421468.07HMGB1'protein_coding'1227AEGain22.6018EU ES AB ER3c50.00
1431478.06NUP35'protein_coding'1027AEGain18.8312EU AB E5_Ae83.33
1441488.05HSBP1'protein_coding'14AEGain15.844EU ER1a100.00
1451498.04SEPT7'protein_coding'1433AEGain33.307EU ES AB ER1d40.00
1461508.02MAT2A'protein_coding'1439AEGain103.6211EU ES AB ER1c44.44
1471518.02MTO1'protein_coding'1338AEGain17.4810EU AB ER1e75.00
1481528.02PFDN4'protein_coding'515AEGain28.778EU ES AB E1a_E4a20.00
1491538.02AL035420.2'lincRNA'12AEGain23.821AB E2_Aa0
1501548.01SNHG5'processed_transcript'1020AEGain34.7215EU AB ER1b63.64
1511557.98ITGB1'protein_coding'2258AEGain11.328EU AB ER2d80.00
1521567.98MTF2'protein_coding'1341AEGain15.539EU AB CE ER1f75.00
1531577.97TMEM167A'protein_coding'14AEGain14.916EU E1a_E2a100.00
1541587.97ENTPD1'protein_coding'1338AEGain15.946EU ES AB ER4b66.67
1551597.95SNAPC3'protein_coding'927AEGain20.7815EU AB ER1d37.50
1561607.95C10orf32'protein_coding'618AEGain12.798EU AB ER1e80.00
1571617.94ARPC3'protein_coding'925AEGain37.558EU ES AB ER2d60.00
1581627.94HLA-C'protein_coding'1227AEGain84.998EU ES AB E1_Ah25.00
1591637.93IFI44L'protein_coding'1131AEGain29.8912EU AB ER2e33.33
1601647.93TXNDC12'protein_coding'414AEGain12.414EU AB E1_Ab100.00
1611657.90PIAS1'protein_coding'114AEGain36.201EU E1a_E2a0
1621667.90SH3BGRL'protein_coding'411AEGain16.384EU ES AB E1_Ab100.00
1631677.89KHDC1'protein_coding'924AEGain29.503AB E3_Da0
1641687.89GTF3C3'protein_coding'1039AEGain13.537EU ES AB ER1c75.00
1651697.88SFRS18'protein_coding'1032AEGain19.4813EU AB ER1b60.00
1661707.86GAPDH'protein_coding'1543AEGain90.029EU AB ER1g85.71
1671717.86ATP5F1'protein_coding'619AEGain82.759EU AB ER1f66.67
1681727.86CACNB4'protein_coding'934AELoss-24.3724EU ES AB IR I1645.45
1691737.85C1D'protein_coding'721AEGain13.6624EU ES AB ER2f77.78
1701747.85RPL36AL'protein_coding'12AEGain43.372EU ER1a100.00
1711757.84C17orf45'protein_coding'2044AEGain86.9425EU AB ER1o61.11
1721767.83RPS12'protein_coding'310AEGain82.434EU E1a_E2a100.00
1731777.83SAP18'protein_coding'818AEGain50.2815EU AB E1_Ab66.67
1741787.82CCT8'protein_coding'1134AEGain26.245EU AB ER1c50.00
1751797.81UQCC'protein_coding'2854AEGain20.5823EU ES AB CE E1a_E5a75.00
1761807.79PSMA1'protein_coding'717AEGain28.152EU ER3a0.00
1771817.79VPS29'protein_coding'39AEGain15.489EU ES AB CE ER1b75.00
1781827.77RTCD1'protein_coding'521AEGain12.377EU AB ER1e100.00
1791837.77ECHDC1'protein_coding'2146AEGain20.2017EU ES AB ER5a70.00
1801847.76HNRNPA1'protein_coding'314AEGain63.508EU ER3a57.14
1811857.76RAD51C'protein_coding'1232AEGain30.3211EU ES AB ER1f37.50
1821867.75HTATIP2'protein_coding'59AEGain20.084EU ER1c100.00
1831877.75TMCO1'protein_coding'621AEGain21.477EU AB E1_Af50.00
1841887.74LSM8'protein_coding'410AEGain15.639EU AB ER1c75.00
1851897.74AC007390.4'protein_coding'718AEGain26.347EU ES AB E1a_E5a60.00
1861907.74C12orf5'protein_coding'16AEGain23.152EU ER1a100.00
1871917.73DNAJC24'protein_coding'27AEGain13.093EU E1a_E2a100.00
1881927.73RPL22'protein_coding'820AEGain33.8315EU AB ER5b50.00
1891937.73C2orf43'protein_coding'1028AEGain12.096EU AB ER1f75.00
1901947.72GHITM'protein_coding'316AEGain40.916EU AB E1_Ac75.00
1911957.71PCNA'protein_coding'28AEGain57.954EU AB ENST00000379143100.00
1921967.71PRR3'protein_coding'816AEGain20.527EU AB ER2f66.67
1931977.70STK3'protein_coding'820AEGain13.398EU AB ER1c75.00
1941987.70DAPP1'protein_coding'19AEGain17.204EU E1a_E2a100.00
1951997.70ANAPC10'protein_coding'26AEGain20.854EU AB ER1b50.00
1962007.69SLC25A5'protein_coding'410AEGain185.375EU ES AB ER1b33.33
1972017.69EIF3M'protein_coding'212AEGain15.642EU ER1b0.00
1982027.67TTC14'protein_coding'1234AEGain24.8721EU ES AB ER1e58.33
1992037.67OSBPL9'protein_coding'2347AEGain23.9513EU ES AB CE ER8d44.44
2002047.67CHCHD7'protein_coding'58AEGain82.1910EU ES AB ENST0000035531585.71
2012057.67C21orf51'protein_coding'818AEGain29.297EU ES ER1c50.00
2022067.66AC025647.2'protein_coding'14AEGain30.663EU ER1a50.00
2032077.66CWC15'protein_coding'18AEGain32.967EU ER1a66.67
2042087.66MOBKL1B'protein_coding'1023AEGain29.475EU ES ER2c50.00
2052097.65XRCC5'protein_coding'1350AEGain27.297EU ES AB E4_Ag75.00
2062107.65SSR1'protein_coding'1032AEGain8.366EU AB ER3b75.00
2072117.64PPA1'protein_coding'417AEGain37.213EU ER2a100.00
2082127.62FBXO28'protein_coding'38AEGain13.985EU AB ER1b66.67
2092137.61ACO2'protein_coding'833AEGain162.2812EU ES AB ER1b57.14
2102147.60UBQLN1'protein_coding'213AEGain26.403EU AB E1_Ab0.00
2112157.60TNPO1'protein_coding'530AEGain14.655EU AB E1_Ac33.33
2122167.59RPL13'protein_coding'821AEGain237.078EU ER1e71.43
2132177.59SUCLA2'protein_coding'1233AEGain13.194EU AB ER1c100.00
2142187.59TMSB4X'protein_coding'510AEGain152.464EU ER1c66.67
2152197.58CDC42'protein_coding'717AEGain39.826EU ES ER1c60.00
2162207.58ATP5O'protein_coding'1129AEGain148.6711EU AB ER1b71.43
2172217.58SLC25A46'protein_coding'313AEGain12.048EU AB CE ER1c100.00
2182227.57APOL1'protein_coding'1632AEGain9.827EU AB E1_Ah100.00
2192237.55PSMD6'protein_coding'1227AEGain26.1313EU AB ER2f62.50
2202247.55UBE2A'protein_coding'513AEGain11.676EU E1a_E2a80.00
2212257.54GBAS'protein_coding'1131AEGain14.617EU AB E2_Ac40.00
2222267.54TARDBP'protein_coding'1233AEGain26.0713EU AB ER2d25.00
2232277.54NAA25'protein_coding'225AEGain16.511EU ER1a0
2242287.54C6orf162'protein_coding'26AEGain16.533EU ES E1a_E3a50.00
2252297.54NSMCE1'protein_coding'211AEGain38.235EU ER1b75.00
2262307.52SURF4'protein_coding'617AEGain27.014EU AB E1_Ac50.00
2272317.52ZMYND8'protein_coding'1650AEGain69.4723EU ES AB IR CE ER1g50.00
2282327.52RPL26'protein_coding'27AEGain85.379EU AB E1a_E2a71.43
2292337.52RBBP4'protein_coding'1441AEGain16.9514EU ES AB CE ER1a71.43
2302347.52RPP14'protein_coding'1334AEGain27.0814EU ES AB ER1d30.00
2312357.52CNOT7'protein_coding'210AEGain17.482EU AB E1_Ab0
2322367.50UBA3'protein_coding'1133AEGain11.049EU AB ER1e85.71
2332377.49AC096663.2'pseudogene'24AELoss-24.083EU AB E1_Ab0
2342397.49CAPZA1'protein_coding'723AEGain19.516EU ES AB E1a_E4a50.00
2352407.49AK2'protein_coding'1026AEGain52.0212EU AB ER1e85.71
2362417.48ITGB1BP1'protein_coding'2147AEGain39.4126EU ES AB CE ER1f76.92
2372427.48CCDC126'protein_coding'921AEGain12.383EU AB ER2b100.00
2382437.48POLE3'protein_coding'410AEGain40.386EU AB ER2c75.00
2392447.47COX7A2L'protein_coding'1123AEGain100.8214EU ES AB E2_Ae55.56
2402457.45EXOC4'protein_coding'2461AEGain12.843EU ER1b50.00
2412467.42SEC61G'protein_coding'717AEGain85.9912EU AB ER2e66.67
2422477.42VAMP7'protein_coding'823AEGain14.437EU AB ER1d100.00
2432487.42MRFAP1'protein_coding'38AEGain44.1110EU AB ER1c50.00
2442497.41ARL6IP6'protein_coding'616AEGain10.8110EU ES AB ER1f83.33
2452507.41MCM7'protein_coding'1540AEGain93.144EU AB ER1c100.00
2462517.41STX7'protein_coding'622AEGain18.155EU ER1b50.00
2472527.40VPS41'protein_coding'1457AEGain20.5411EU AB CE ER4a62.50
2482537.39NOP56'protein_coding'1938AEGain99.188EU AB IR E1a_E1g20.00
2492547.38SNRPG'protein_coding'922AEGain140.4512EU AB ER1d60.00
2502557.38ZNF271'protein_coding'25AEGain10.552EU ER1a0.00
2512567.38RPS24'protein_coding'1736AEGain65.6626EU ES AB ER1g65.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1312.44SRP9'protein_coding'410AEGain63.615EU ES E1a_E2a100.00
2411.77CBX3'protein_coding'819AEGain73.103EU AB ER2b100.00
3511.64HNRNPH1'protein_coding'418AEGain178.7215EU ES AB E1a_E1d50.00
4611.60ZCCHC10'protein_coding'27AEGain45.593EU ES ER1b100.00
5711.54CAPZA2'protein_coding'1638AEGain52.7215EU ES AB E3_Ah70.00
6811.51TFAM'protein_coding'414AEGain46.123EU AB E1_Ad100.00
71011.07RPL5'protein_coding'724AEGain64.239EU AB ER1c83.33
81111.04RBM3'protein_coding'1433AEGain150.0519EU AB ER1e62.50
91211.04BZW1'protein_coding'1847AEGain101.3013EU ES AB ER2g66.67
101410.79AC012652.3'lincRNA'27AEGain33.872EU ER1a100.00
111710.72RPL22L1'protein_coding'918AEGain59.7811EU ES AB ER1f77.78
121810.71STX16'protein_coding'2455AEGain39.0118EU ES AB ER1g66.67
131910.49PBEF1'protein_coding'1436AEGain36.2418EU ES AB ER2f75.00
142010.24HLA-DQA1'protein_coding'1125AEGain162.4312EU AB ER4g75.00
152110.22C19orf42'protein_coding'920AEGain100.7814EU ES AB ER1d66.67
162210.20SR140'protein_coding'2478AEGain47.8214EU ES AB ER4e42.86
172310.14CD164'protein_coding'714AEGain25.005EU AB ER1b100.00
182410.11RPS4X'protein_coding'517AEGain110.5914EU AB ER2a75.00
192510.10PSMA2'protein_coding'723AEGain94.7413EU ES AB ER1e62.50
202610.07PDCD10'protein_coding'2156AEGain26.3314EU AB ER2g80.00
21279.98EIF1'protein_coding'615AEGain110.854EU AB ER1c100.00
22289.96SNRNP27'protein_coding'516AEGain42.398EU AB ER1c60.00
23299.91ESD'protein_coding'519AEGain57.888EU AB ER1b50.00
24309.90GTF3A'protein_coding'1026AEGain49.8110EU ES AB ER1c83.33
25319.88ZC3H11A'protein_coding'1243AEGain24.9111EU AB ER1e60.00
26329.86IGHV3-20'IG_V_gene'12DEGain929.250N/AIGHV3-20N/A
27339.80EIF2A'protein_coding'1750AEGain47.9913EU AB ER1l50.00
28349.79RPL4'protein_coding'418AEGain85.384EU ER1b33.33
29359.73METTL5'protein_coding'1025AEGain46.8512EU AB ER1g66.67
30369.71STMN1'protein_coding'1124AEGain202.877EU ES AB ER2c80.00
31379.66MRPL35'protein_coding'38AEGain61.507EU AB ER1b40.00
32389.63TANK'protein_coding'2561AEGain47.4715EU AB ER1c36.36
33399.62OSTC'protein_coding'27AEGain34.875EU ES AB ER1a66.67
34409.62MRPL42'protein_coding'49AEGain22.785EU ER2a100.00
35419.59CRBN'protein_coding'1436AEGain23.264EU AB ER1f100.00
36429.56TTC1'protein_coding'18AEGain67.863EU E1a_E2a50.00
37439.52CENPK'protein_coding'314AEGain20.632EU E1a_E2a100.00
38449.52NASP'protein_coding'1235AEGain89.4613EU AB ER2d100.00
39459.51NDUFA5'protein_coding'1125AEGain38.5710EU AB ER1f42.86
40469.49C20orf43'protein_coding'1028AEGain129.259EU AB ER1e80.00
41479.49SFRS6'protein_coding'39AEGain22.386EU ES AB ER1a100.00
42489.43TIMM17A'protein_coding'413AEGain72.126EU E1a_E2a80.00
43499.43RPS2P32'pseudogene'25AEGain43.272AB E1_Da0
44509.39FCF1'protein_coding'18AEGain28.614EU ER1a66.67
45519.33EIF3I'protein_coding'622AEGain222.947EU ER2d66.67
46539.26ORC3L'protein_coding'630AEGain37.254EU ER1c33.33
47549.18NDUFA9'protein_coding'111AEGain80.533EU ER1a100.00
48559.18C16orf63'protein_coding'26AEGain18.522EU ER1b100.00
49569.15RPS6'protein_coding'514AEGain33.896EU ER1b80.00
50579.13RRM2'protein_coding'1232AEGain40.2610EU AB E1_Da33.33
51589.04OGT'protein_coding'1246AEGain33.158EU ES AB ER1c80.00
52599.03OXA1L'protein_coding'930AEGain32.5610EU AB ER1e50.00
53609.01BUB3'protein_coding'619AEGain63.5614EU AB ER1b44.44
54619.00HMGB2'protein_coding'37AEGain30.926EU AB ER1a75.00
55628.99SRPK1'protein_coding'621AEGain51.826EU ER1c60.00
56638.97DDX17'protein_coding'1640AEGain23.459EU ES AB ER2d75.00
57648.95EEF1B2'protein_coding'1128AEGain241.5316EU AB E1_Aj50.00
58658.93NUP107'protein_coding'228AEGain30.739EU ER1a62.50
59668.93HSP90AA1'protein_coding'418AEGain26.723EU ER3b100.00
60678.93UFM1'protein_coding'719AEGain9.768EU ES AB ER1d60.00
61688.91GSPT1'protein_coding'419AEGain23.677EU AB ER2a75.00
62698.90RAD23B'protein_coding'621AEGain32.596EU AB ER1d75.00
63708.86HMGN1'protein_coding'2146AEGain42.0238EU AB ER3i66.67
64718.85VPS35'protein_coding'117AEGain30.965EU E1a_E2a100.00
65728.84CCT3'protein_coding'1846AEGain82.5215EU AB ER2c80.00
66738.84MED21'protein_coding'14AEGain25.895EU ER1a100.00
67748.84HNRNPA3'protein_coding'1137AEGain25.3842EU ES AB ER1d50.00
68758.80SAR1B'protein_coding'414AEGain21.733EU AB ER1b100.00
69768.79IGKV4-1'IG_V_gene'12DEGain443.390N/AIGKV4-1N/A
70778.79PMS1'protein_coding'2447AEGain21.0815EU AB CE ER1i50.00
71788.77BCCIP'protein_coding'716AEGain31.413EU AB ER1a0.00
72798.76RAB18'protein_coding'826AEGain22.8210EU ES AB ER1d60.00
73808.75GTPBP10'protein_coding'1333AEGain20.355EU AB ER7h100.00
74818.74EIF4A2'protein_coding'2961AEGain29.9516EU AB ER1j50.00
75828.73ATPIF1'protein_coding'610AEGain53.159EU AB CE E1_Ad20.00
76838.71CDC123'protein_coding'931AEGain56.309EU AB E1_Af66.67
77848.70MRPS22'protein_coding'1542AEGain24.0923EU ES AB IR ER8g86.67
78858.69THUMPD3'protein_coding'1028AEGain24.017EU AB ER1e0.00
79868.68TRA2B'protein_coding'1847AEGain43.4934EU ES AB CE ER1e63.16
80878.67STAMBP'protein_coding'1338AEGain17.2812EU ES AB CE ER1d66.67
81888.66DRAM2'protein_coding'1132AEGain29.7521EU ES AB CE ENST0000046144944.44
82898.62RPL31'protein_coding'1122AEGain121.1725EU ES AB ER1h68.75
83908.62SP140'protein_coding'1263AEGain43.5315EU ES AB ER1e45.45
84918.62SPCS1'protein_coding'511AEGain24.656EU AB ER2c66.67
85928.60SUB1'protein_coding'15AEGain24.242EU E1a_E2a100.00
86938.60SAT1'protein_coding'1028AEGain29.509EU AB ER1a60.00
87948.59ACTR2'protein_coding'418AEGain23.918EU AB ER1b100.00
88958.58PHF11'protein_coding'2044AEGain13.696EU ES AB ER1e50.00
89968.57ZMAT2'protein_coding'16AEGain45.624EU E1a_E2a66.67
90978.55GYG1'protein_coding'1848AEGain16.737EU AB ER1h75.00
91988.53RNF114'protein_coding'311AEGain24.677EU AB ER1a80.00
92998.52HP1BP3'protein_coding'1946AEGain31.4014EU ES AB E1_Ac44.44
931008.51NUDT5'protein_coding'927AEGain45.4222EU AB ER1e66.67
941018.51GOSR1'protein_coding'923AEGain29.778EU ES ER1b57.14
951028.49GDI2'protein_coding'1128AEGain23.916EU ES AB E3_Ad100.00
961038.49SAMD9L'protein_coding'917AEGain16.603EU AB ER1c100.00
971048.49C12orf47'processed_transcript'48AEGain28.045EU AB ER1b100.00
981058.48HEATR1'protein_coding'552AEGain35.8816EU ES ER1a66.67
991068.47AC018462.2'processed_transcript'211AEGain32.425EU AB IR E2_Aa0.00
1001078.47SNW1'protein_coding'215AEGain22.487EU ER1a83.33
1011088.46FXC1'protein_coding'310AEGain17.366EU AB ER1c100.00
1021098.45C15orf57'protein_coding'37AEGain26.382EU ER1b100.00
1031108.44RPS15A'protein_coding'27AEGain152.605EU ER1a100.00
1041118.41NCBP2'protein_coding'1330AEGain30.0911EU AB ER1d50.00
1051128.41COMMD3'protein_coding'2140AEGain42.3030EU ES AB ER1g55.56
1061138.40HMGN2'protein_coding'928AEGain27.887EU AB ER1f80.00
1071148.38CALM2'protein_coding'1334AEGain44.5214EU AB ER1b50.00
1081158.38PSMD5'protein_coding'925AEGain18.506EU AB ER1d100.00
1091168.36IFRD1'protein_coding'1748AEGain23.938EU AB E6_Ad20.00
1101178.34PCNP'protein_coding'820AEGain18.174EU AB CE ER1e100.00
1111188.31NUPL2'protein_coding'1229AEGain29.8528EU ES AB ER1d57.14
1121198.30RPL35A'protein_coding'920AEGain178.2310EU ES AB ER1e62.50
1131208.29SKA2'protein_coding'25AEGain30.083EU E1a_E2a50.00
1141218.29ARF4'protein_coding'922AEGain13.8713EU AB ER2e75.00
1151228.28LSM5'protein_coding'1021AEGain15.8416EU ES AB ER2d83.33
1161238.27CLTC'protein_coding'1052AEGain22.233EU AB E1_Ab0.00
1171248.27RPS7'protein_coding'922AEGain158.5514EU AB ER1d77.78
1181258.27BRP44L'protein_coding'615AEGain43.9716EU AB CE E1_Ab60.00
1191268.26IL6ST'protein_coding'826AEGain16.683EU AB E1a_E2a100.00
1201278.26SELT'protein_coding'924AEGain26.3810EU ES AB E2_Ae71.43
1211288.26YWHAB'protein_coding'719AEGain22.264EU ES ER1d100.00
1221298.25FAS'protein_coding'1929AEGain16.5613EU ES AB IR E2_Ad83.33
1231308.25FNTB'protein_coding'421AEGain31.6818EU AB ER1b30.77
1241318.25C20orf30'protein_coding'1017AEGain14.826EU AB ER1c100.00
1251328.23RSRC1'protein_coding'1436AEGain14.3715EU AB CE E3_Ae87.50
1261338.23THOC7'protein_coding'822AEGain13.863EU ES E1a_E5c100.00
1271358.21DIMT1L'protein_coding'112AEGain21.633EU E1a_E2a50.00
1281368.20BTK'protein_coding'1647AEGain37.074EU AB ER1d50.00
1291378.19MELK'protein_coding'523AEGain15.765EU ES AB ER1b66.67
1301388.18ATF2'protein_coding'2240AEGain23.9712EU AB ER2d60.00
1311398.18ZWINT'protein_coding'1138AEGain73.3620EU AB ER1f82.35
1321408.17MCM10'protein_coding'935AEGain38.827EU ER1c66.67
1331418.17PPIA'protein_coding'1023AEGain358.518EU ES AB ER1c40.00
1341428.12HNRNPH2'protein_coding'48AEGain29.474EU ER1b66.67
1351438.12PNRC1'protein_coding'36AEGain16.566EU ES AB ER1a66.67
1361448.11ARL5A'protein_coding'824AEGain7.0510EU ES AB CE ER1e57.14
1371458.11RPS13'protein_coding'16AEGain159.196EU ER1a60.00
1381468.07HMGB1'protein_coding'1227AEGain22.6018EU ES AB ER3c50.00
1391478.06NUP35'protein_coding'1027AEGain18.8312EU AB E5_Ae83.33
1401488.05HSBP1'protein_coding'14AEGain15.844EU ER1a100.00
1411498.04SEPT7'protein_coding'1433AEGain33.307EU ES AB ER1d40.00
1421508.02MAT2A'protein_coding'1439AEGain103.6211EU ES AB ER1c44.44
1431518.02MTO1'protein_coding'1338AEGain17.4810EU AB ER1e75.00
1441528.02PFDN4'protein_coding'515AEGain28.778EU ES AB E1a_E4a20.00
1451538.02AL035420.2'lincRNA'12AEGain23.821AB E2_Aa0
1461548.01SNHG5'processed_transcript'1020AEGain34.7215EU AB ER1b63.64
1471557.98ITGB1'protein_coding'2258AEGain11.328EU AB ER2d80.00
1481567.98MTF2'protein_coding'1341AEGain15.539EU AB CE ER1f75.00
1491577.97TMEM167A'protein_coding'14AEGain14.916EU E1a_E2a100.00
1501587.97ENTPD1'protein_coding'1338AEGain15.946EU ES AB ER4b66.67
1511597.95SNAPC3'protein_coding'927AEGain20.7815EU AB ER1d37.50
1521607.95C10orf32'protein_coding'618AEGain12.798EU AB ER1e80.00
1531617.94ARPC3'protein_coding'925AEGain37.558EU ES AB ER2d60.00
1541627.94HLA-C'protein_coding'1227AEGain84.998EU ES AB E1_Ah25.00
1551637.93IFI44L'protein_coding'1131AEGain29.8912EU AB ER2e33.33
1561647.93TXNDC12'protein_coding'414AEGain12.414EU AB E1_Ab100.00
1571657.90PIAS1'protein_coding'114AEGain36.201EU E1a_E2a0
1581667.90SH3BGRL'protein_coding'411AEGain16.384EU ES AB E1_Ab100.00
1591677.89KHDC1'protein_coding'924AEGain29.503AB E3_Da0
1601687.89GTF3C3'protein_coding'1039AEGain13.537EU ES AB ER1c75.00
1611697.88SFRS18'protein_coding'1032AEGain19.4813EU AB ER1b60.00
1621707.86GAPDH'protein_coding'1543AEGain90.029EU AB ER1g85.71
1631717.86ATP5F1'protein_coding'619AEGain82.759EU AB ER1f66.67
1641737.85C1D'protein_coding'721AEGain13.6624EU ES AB ER2f77.78
1651747.85RPL36AL'protein_coding'12AEGain43.372EU ER1a100.00
1661757.84C17orf45'protein_coding'2044AEGain86.9425EU AB ER1o61.11
1671767.83RPS12'protein_coding'310AEGain82.434EU E1a_E2a100.00
1681777.83SAP18'protein_coding'818AEGain50.2815EU AB E1_Ab66.67
1691787.82CCT8'protein_coding'1134AEGain26.245EU AB ER1c50.00
1701797.81UQCC'protein_coding'2854AEGain20.5823EU ES AB CE E1a_E5a75.00
1711807.79PSMA1'protein_coding'717AEGain28.152EU ER3a0.00
1721817.79VPS29'protein_coding'39AEGain15.489EU ES AB CE ER1b75.00
1731827.77RTCD1'protein_coding'521AEGain12.377EU AB ER1e100.00
1741837.77ECHDC1'protein_coding'2146AEGain20.2017EU ES AB ER5a70.00
1751847.76HNRNPA1'protein_coding'314AEGain63.508EU ER3a57.14
1761857.76RAD51C'protein_coding'1232AEGain30.3211EU ES AB ER1f37.50
1771867.75HTATIP2'protein_coding'59AEGain20.084EU ER1c100.00
1781877.75TMCO1'protein_coding'621AEGain21.477EU AB E1_Af50.00
1791887.74LSM8'protein_coding'410AEGain15.639EU AB ER1c75.00
1801897.74AC007390.4'protein_coding'718AEGain26.347EU ES AB E1a_E5a60.00
1811907.74C12orf5'protein_coding'16AEGain23.152EU ER1a100.00
1821917.73DNAJC24'protein_coding'27AEGain13.093EU E1a_E2a100.00
1831927.73RPL22'protein_coding'820AEGain33.8315EU AB ER5b50.00
1841937.73C2orf43'protein_coding'1028AEGain12.096EU AB ER1f75.00
1851947.72GHITM'protein_coding'316AEGain40.916EU AB E1_Ac75.00
1861957.71PCNA'protein_coding'28AEGain57.954EU AB ENST00000379143100.00
1871967.71PRR3'protein_coding'816AEGain20.527EU AB ER2f66.67
1881977.70STK3'protein_coding'820AEGain13.398EU AB ER1c75.00
1891987.70DAPP1'protein_coding'19AEGain17.204EU E1a_E2a100.00
1901997.70ANAPC10'protein_coding'26AEGain20.854EU AB ER1b50.00
1912007.69SLC25A5'protein_coding'410AEGain185.375EU ES AB ER1b33.33
1922017.69EIF3M'protein_coding'212AEGain15.642EU ER1b0.00
1932027.67TTC14'protein_coding'1234AEGain24.8721EU ES AB ER1e58.33
1942037.67OSBPL9'protein_coding'2347AEGain23.9513EU ES AB CE ER8d44.44
1952047.67CHCHD7'protein_coding'58AEGain82.1910EU ES AB ENST0000035531585.71
1962057.67C21orf51'protein_coding'818AEGain29.297EU ES ER1c50.00
1972067.66AC025647.2'protein_coding'14AEGain30.663EU ER1a50.00
1982077.66CWC15'protein_coding'18AEGain32.967EU ER1a66.67
1992087.66MOBKL1B'protein_coding'1023AEGain29.475EU ES ER2c50.00
2002097.65XRCC5'protein_coding'1350AEGain27.297EU ES AB E4_Ag75.00
2012107.65SSR1'protein_coding'1032AEGain8.366EU AB ER3b75.00
2022117.64PPA1'protein_coding'417AEGain37.213EU ER2a100.00
2032127.62FBXO28'protein_coding'38AEGain13.985EU AB ER1b66.67
2042137.61ACO2'protein_coding'833AEGain162.2812EU ES AB ER1b57.14
2052147.60UBQLN1'protein_coding'213AEGain26.403EU AB E1_Ab0.00
2062157.60TNPO1'protein_coding'530AEGain14.655EU AB E1_Ac33.33
2072167.59RPL13'protein_coding'821AEGain237.078EU ER1e71.43
2082177.59SUCLA2'protein_coding'1233AEGain13.194EU AB ER1c100.00
2092187.59TMSB4X'protein_coding'510AEGain152.464EU ER1c66.67
2102197.58CDC42'protein_coding'717AEGain39.826EU ES ER1c60.00
2112207.58ATP5O'protein_coding'1129AEGain148.6711EU AB ER1b71.43
2122217.58SLC25A46'protein_coding'313AEGain12.048EU AB CE ER1c100.00
2132227.57APOL1'protein_coding'1632AEGain9.827EU AB E1_Ah100.00
2142237.55PSMD6'protein_coding'1227AEGain26.1313EU AB ER2f62.50
2152247.55UBE2A'protein_coding'513AEGain11.676EU E1a_E2a80.00
2162257.54GBAS'protein_coding'1131AEGain14.617EU AB E2_Ac40.00
2172267.54TARDBP'protein_coding'1233AEGain26.0713EU AB ER2d25.00
2182277.54NAA25'protein_coding'225AEGain16.511EU ER1a0
2192287.54C6orf162'protein_coding'26AEGain16.533EU ES E1a_E3a50.00
2202297.54NSMCE1'protein_coding'211AEGain38.235EU ER1b75.00
2212307.52SURF4'protein_coding'617AEGain27.014EU AB E1_Ac50.00
2222317.52ZMYND8'protein_coding'1650AEGain69.4723EU ES AB IR CE ER1g50.00
2232327.52RPL26'protein_coding'27AEGain85.379EU AB E1a_E2a71.43
2242337.52RBBP4'protein_coding'1441AEGain16.9514EU ES AB CE ER1a71.43
2252347.52RPP14'protein_coding'1334AEGain27.0814EU ES AB ER1d30.00
2262357.52CNOT7'protein_coding'210AEGain17.482EU AB E1_Ab0
2272367.50UBA3'protein_coding'1133AEGain11.049EU AB ER1e85.71
2282397.49CAPZA1'protein_coding'723AEGain19.516EU ES AB E1a_E4a50.00
2292407.49AK2'protein_coding'1026AEGain52.0212EU AB ER1e85.71
2302417.48ITGB1BP1'protein_coding'2147AEGain39.4126EU ES AB CE ER1f76.92
2312427.48CCDC126'protein_coding'921AEGain12.383EU AB ER2b100.00
2322437.48POLE3'protein_coding'410AEGain40.386EU AB ER2c75.00
2332447.47COX7A2L'protein_coding'1123AEGain100.8214EU ES AB E2_Ae55.56
2342457.45EXOC4'protein_coding'2461AEGain12.843EU ER1b50.00
2352467.42SEC61G'protein_coding'717AEGain85.9912EU AB ER2e66.67
2362477.42VAMP7'protein_coding'823AEGain14.437EU AB ER1d100.00
2372487.42MRFAP1'protein_coding'38AEGain44.1110EU AB ER1c50.00
2382497.41ARL6IP6'protein_coding'616AEGain10.8110EU ES AB ER1f83.33
2392507.41MCM7'protein_coding'1540AEGain93.144EU AB ER1c100.00
2402517.41STX7'protein_coding'622AEGain18.155EU ER1b50.00
2412527.40VPS41'protein_coding'1457AEGain20.5411EU AB CE ER4a62.50
2422537.39NOP56'protein_coding'1938AEGain99.188EU AB IR E1a_E1g20.00
2432547.38SNRPG'protein_coding'922AEGain140.4512EU AB ER1d60.00
2442557.38ZNF271'protein_coding'25AEGain10.552EU ER1a0.00
2452567.38RPS24'protein_coding'1736AEGain65.6626EU ES AB ER1g65.00
2462577.37SLAMF7'protein_coding'1221AEGain8.1810EU ES AB ER1f71.43
2472587.37GNL3'protein_coding'1437AEGain16.306EU ES AB ER2g66.67
2482597.36TTC37'protein_coding'143AEGain13.435EU E1a_E2a75.00
2492607.34SCOC'protein_coding'511AEGain15.764EU AB ER4b100.00
2502617.33UTP11L'protein_coding'415AEGain12.015EU AB ER2b66.67
2512627.33ZNF655'protein_coding'2661AEGain12.2412EU AB ER1k75.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.90RPL17'protein_coding'312AELoss-286.677EU ER6d50.00
2212.78RPL39'protein_coding'48AELoss-236.245EU AB ER3b66.67
3911.10IGHV4-31'IG_V_gene'12DELoss-2194.880N/AIGHV4-31N/A
41310.83VDAC2'protein_coding'1336AELoss-136.3225EU ES AB ER11b63.16
51510.79EEF1A1'protein_coding'1131AELoss-71.2613EU AB ER6a22.22
61610.78BCRL4'protein_coding'211AELoss-560.122EU ER3a100.00
7529.28IGLV2-14'IG_V_gene'12DELoss-621.050N/AIGLV2-14N/A
81348.21RNF181'protein_coding'616AELoss-10.606EU AB E1a_E2a100.00
91727.86CACNB4'protein_coding'934AELoss-24.3724EU ES AB IR I1645.45
102377.49AC096663.2'pseudogene'24AELoss-24.083EU AB E1_Ab0
112387.49D87015.1'lincRNA'510DELoss-180.370N/AD87015.1N/A
122827.22RPS10'protein_coding'714AELoss-4.417EU ES AB E6_Aa40.00
133227.04SLC35F2'protein_coding'315AELoss-17.685AB CE I1_AR10
143376.97FKBP1A'protein_coding'922AELoss-7.808EU AB E7_Db100.00
153446.94DIAPH1'protein_coding'1249AELoss-16.4411EU ES AB E22a_E24a71.43
164086.77PIK3AP1'protein_coding'729AELoss-19.0010EU ES AB CE I3_AR516.67
174326.68YY1AP1'protein_coding'2650AELoss-17.6724EU ES AB IR I7_SR261.54
184376.66ASCC2'protein_coding'2362AELoss-13.679EU AB ER13b0.00
194476.63AC092375.6'protein_coding'423AELoss-42.894EU ER6a0.00
204966.50IGHV4-61'IG_V_gene'12DELoss-90.640N/AIGHV4-61N/A
215146.45HLA-F'protein_coding'2145AELoss-33.0014EU AB ER7c16.67
225436.38AC106782.7'protein_coding'214AELoss-35.714AB CE I1_AR140
235896.28VNN1'protein_coding'17DELoss-77.680N/AVNN1N/A
246316.20DHRSX'protein_coding'922AELoss-9.104EU AB CE I7_AR4100.00
256796.10CLEC2D'protein_coding'1330DELoss-68.730N/ACLEC2DN/A
266896.08COX7B'protein_coding'37AELoss-4.634EU AB E3_Aa100.00
276956.07APEX1'protein_coding'411AELoss-11.986EU AB ER5d50.00
287076.05RPLP1'protein_coding'49AELoss-4.924EU ES AB E3_Aa50.00
297196.03PRKRA'protein_coding'1433AELoss-29.8017EU AB IR E8_Aa57.14
307366.00RP11-10B2.1'pseudogene'11DELoss-64.200N/ARP11-10B2.1N/A
317465.98RPS19'protein_coding'16AELoss-4.743EU E2a_E3a100.00
327825.92ARL3'protein_coding'16AELoss-15.014EU CE I1_AR350.00
338145.85F13A1'protein_coding'932DELoss-57.680N/AF13A1N/A
348305.83MGST1'protein_coding'48DELoss-56.760N/AMGST1N/A
358345.82BAT1'protein_coding'3058AELoss-11.6310EU AB ER5b50.00
368385.81ADCY7'protein_coding'227AELoss-13.5814EU CE ER26b45.45
378525.80CLECL1'protein_coding'12DELoss-55.610N/ACLECL1N/A
388605.79STAG3L2'protein_coding'927AELoss-10.275EU E8f_E9a0.00
398765.77ABTB2'protein_coding'218AELoss-9.4610CE I1_AR230
408835.76GOLGA8A'protein_coding'430AELoss-12.144EU AB ENST000003605530.00
418995.73TTLL5'protein_coding'741AELoss-9.279EU ES AB CE I31_AR660.00
429165.69IGHV4-39'IG_V_gene'12DELoss-51.720N/AIGHV4-39N/A
439375.67CD38'protein_coding'18DELoss-50.750N/ACD38N/A
449405.66S100A11'protein_coding'24DELoss-50.520N/AS100A11N/A
459635.63C18orf22'protein_coding'29AELoss-6.034EU AB E2_Aa100.00
469665.63CBFA2T2'protein_coding'1332AELoss-11.005EU AB CE I1_AR50.00
479785.61TJP1'protein_coding'842DELoss-48.950N/ATJP1N/A
4810045.58SPARC'protein_coding'110DELoss-47.830N/ASPARCN/A
4910075.58DTYMK'protein_coding'822AELoss-5.3822EU AB IR I288.89
5010245.55MAP1B'protein_coding'17DELoss-46.930N/AMAP1BN/A
5110285.55GPR160'protein_coding'1232DELoss-46.790N/AGPR160N/A
5210345.54MARCH8'protein_coding'717AELoss-10.967EU AB IR I6_AR10.00
5310405.53ATP5E'protein_coding'37AELoss-3.516EU AB E2_Da50.00
5410605.50SCRN1'protein_coding'1227DELoss-45.200N/ASCRN1N/A
5510665.49ARHGAP9'protein_coding'728AELoss-2.215EU AB E2_Ab0.00
5610985.44CKAP4'protein_coding'36DELoss-43.500N/ACKAP4N/A
5711155.41AUTS2'protein_coding'1648AELoss-3.6914EU ES AB CE E7_Aa33.33
5811305.39EBF1'protein_coding'219AELoss-4.715EU AB CE I6_AR490.00
5911345.39ITM2A'protein_coding'615DELoss-41.990N/AITM2AN/A
6011415.38PREX1'protein_coding'546AELoss-6.005EU CE I1_AR533.33
6111455.38UNC84B'protein_coding'2868AELoss-3.433EU AB E14_Aa100.00
6211495.37ZNF710'protein_coding'15AELoss-6.972CE I1_AR140
6311615.35PARP1'protein_coding'1042AELoss-8.776EU AB ER24c50.00
6411865.33NCKAP1'protein_coding'950DELoss-40.330N/ANCKAP1N/A
6511915.33IGHJ1'IG_J_gene'11DELoss-40.230N/AIGHJ1N/A
6611995.32RFFL'protein_coding'820AELoss-9.0712EU AB CE I1_SR433.33
6712015.32COX7A2'protein_coding'818AELoss-4.0512EU ES AB IR I483.33
6812035.32TAPBP'protein_coding'1329AELoss-8.7415EU AB E5_Dj50.00
6912255.30SUV39H1'protein_coding'731AELoss-5.049EU AB ER4d60.00
7012295.30RAD54L2'protein_coding'732AELoss-10.784CE I1_AR110
7112315.30COQ4'protein_coding'311AELoss-5.706EU AB E3_Aa0.00
7212375.29MYO6'protein_coding'846AELoss-10.548EU IR CE I31_AR133.33
7312435.28RP11-534K14.2'pseudogene'11DELoss-38.830N/ARP11-534K14.2N/A
7412545.26IFI16'protein_coding'1329AELoss-25.298EU AB CE ER14b40.00
7512695.25ASXL1'protein_coding'829AELoss-9.673ES AB CE I7_AR20
7612845.23RASSF6'protein_coding'418DELoss-37.550N/ARASSF6N/A
7712865.23SFMBT2'protein_coding'528AELoss-9.0012EU AB CE I7_AR633.33
7812885.22CHST11'protein_coding'14AELoss-10.038IR CE I3_AR90
7912995.21KANK2'protein_coding'317AELoss-7.296EU AB CE I1_AR166.67
8013025.20HMGCS1'protein_coding'211AELoss-3.105EU ES AB E7_Aa100.00
8113205.18LAPTM4B'protein_coding'312DELoss-36.250N/ALAPTM4BN/A
8213255.18IGLC2'IG_C_gene'11DELoss-36.130N/AIGLC2N/A
8313335.17D87015.2'miRNA'11DELoss-35.940N/AD87015.2N/A
8413495.15STK36'protein_coding'1871AELoss-7.4213EU AB E28_Db11.11
8513625.14ASB3'protein_coding'2153AELoss-10.7312EU CE I14_AR142.86
8613705.13ACAT2'protein_coding'313AELoss-3.035EU AB E9_Aa0.00
8713715.12MMS19'protein_coding'2573AELoss-7.005EU AB CE I1_AR20.00
8813785.11IGHV4-34'IG_V_gene'12DELoss-34.640N/AIGHV4-34N/A
8913975.08RGS2'protein_coding'413DELoss-33.910N/ARGS2N/A
9013985.08CLEC2B'protein_coding'15DELoss-33.800N/ACLEC2BN/A
9114005.08GBE1'protein_coding'832AELoss-3.813ES AB E7b_E9a0.00
9214315.05TP73'protein_coding'818AELoss-4.521CE I5_AR10
9314575.03C1orf149'protein_coding'1025AELoss-6.1210EU AB E7_Db50.00
9414705.00PEX14'protein_coding'416AELoss-3.765EU CE I3_AR4100.00
9514755.00CADM1'protein_coding'314DELoss-32.023EU CADM10.00
9614854.99VPS37B'protein_coding'14AELoss-7.829EU IR I1_AR30
9714864.99SLC25A4'protein_coding'27AELoss-20.552EU ER4b100.00
9814894.99PSMB10'protein_coding'211AELoss-4.151AB E1_Da0
9915174.97GSTM4'protein_coding'1537AELoss-5.039EU AB E7_Aa66.67
10015194.96MUTYH'protein_coding'3770AELoss-6.3122EU ES AB E4_Da35.29
10115514.93RNF44'protein_coding'214AELoss-5.244EU AB ER9f50.00
10215544.93ALDH1L2'protein_coding'325DELoss-30.380N/AALDH1L2N/A
10315644.92SLC2A1'protein_coding'826AELoss-3.566EU ES AB E3_Da75.00
10415924.89PPP2R1A'protein_coding'1442AELoss-4.0212EU AB ER4a57.14
10516104.88TUBA1B'protein_coding'26AELoss-2.292EU E1a_E2a100.00
10616124.88AKR1A1'protein_coding'1433AELoss-3.587EU AB ER5d50.00
10716214.87TCF25'protein_coding'322AELoss-6.553EU CE I6_AR40.00
10816254.86SMG6'protein_coding'220AELoss-3.575EU CE I13_AR6100.00
10916274.86VNN2'protein_coding'510DELoss-29.040N/AVNN2N/A
11016464.85AL662800.1'miRNA'11DELoss-28.760N/AAL662800.1N/A
11116484.84WDR6'protein_coding'2251AELoss-3.633EU AB ER4b0.00
11216804.81GPX7'protein_coding'25DELoss-28.030N/AGPX7N/A
11316824.81VEGFA'protein_coding'1627AELoss-15.1812EU AB ER4l44.44
11416864.80CRY2'protein_coding'825AELoss-6.452AB E7_Aa0
11516914.80CDK10'protein_coding'624AELoss-3.116EU ES E1b_E2a60.00
11616984.79DNASE1L3'protein_coding'924AELoss-7.004AB IR E2_Da0
11717064.78TRAK1'protein_coding'1037AELoss-7.6931EU ES AB IR CE I12_SR133.33
11817144.77SNX29'protein_coding'318AELoss-4.392EU AB E15_Db0
11917184.77LEPREL1'protein_coding'1032DELoss-27.260N/ALEPREL1N/A
12017224.77AC058791.1'processed_transcript'410DELoss-27.224EU AB AC058791.10
12117274.76GNAI1'protein_coding'622DELoss-27.160N/AGNAI1N/A
12217334.76SLC25A24'protein_coding'314DELoss-27.070N/ASLC25A24N/A
12317424.75BEX4'protein_coding'25DELoss-26.840N/ABEX4N/A
12417554.73EDF1'protein_coding'39AELoss-4.432EU E1a_E2a0.00
12517734.72SLC25A23'protein_coding'619AELoss-4.086EU ES AB E14_Da0.00
12617934.70MRPL24'protein_coding'615AELoss-4.954EU AB E3_Da0.00
12717944.70PQLC1'protein_coding'927AELoss-2.205EU AB E4_Aa100.00
12818124.68GPHN'protein_coding'629AELoss-5.127EU ES CE I1_AR1350.00
12918144.67SIK3'protein_coding'1752AELoss-6.006EU ES AB CE I1_AR60.00
13018214.67C19orf53'protein_coding'13AELoss-3.173EU E1a_E2a50.00
13118234.66WBSCR22'protein_coding'2145AELoss-3.699EU AB E11_Db83.33
13218324.65RPL15'protein_coding'1431AELoss-5.7625EU AB E1_Dv53.33
13318334.65IGLV3-13'pseudogene'11DELoss-25.110N/AIGLV3-13N/A
13418474.64XXbac-B461K10.1'protein_coding'740AELoss-3.104EU AB CE E23_Da0.00
13518494.64DNMBP'protein_coding'626AELoss-14.627EU ES CE I1_AR1025.00
13618514.64IGHV4-4'IG_V_gene'12DELoss-24.940N/AIGHV4-4N/A
13718634.63NDUFS6'protein_coding'26AELoss-3.683EU CE I2_AR20
13818724.63FTSJ1'protein_coding'1441AELoss-5.4918EU ES AB ER12e63.64
13918784.62NBEAL2'protein_coding'1685AELoss-3.0518EU AB E12_Aa23.08
14018984.60MYOF'protein_coding'1375AELoss-4.7810EU AB CE I39_AR350.00
14119054.60LYRM1'protein_coding'49AELoss-13.252CE I4_AR10
14219084.60TBC1D4'protein_coding'831AELoss-5.074EU AB CE I1_AR14100.00
14319144.59MID1IP1'protein_coding'37AELoss-4.402AB E3_Da0
14419174.59C4orf32'protein_coding'12DELoss-24.120N/AC4orf32N/A
14519544.57IMMP2L'protein_coding'1127AELoss-6.4812EU AB CE I9_SR260.00
14619594.56FAM21C'protein_coding'945AELoss-17.093EU ER6b0.00
14719764.55MRPL2'protein_coding'922AELoss-3.778EU AB E3_Da100.00
14819964.54SHARPIN'protein_coding'312AELoss-4.911CE I2_AR20
14920234.52KIAA0922'protein_coding'1153AELoss-7.5810EU AB ER23a50.00
15020294.51RAP1B'protein_coding'820AELoss-7.6225EU AB CE I1_SR337.50
15120304.51C21orf58'protein_coding'1331AELoss-6.951EU ER10a0
15220444.50TES'protein_coding'1228DELoss-22.600N/ATESN/A
15320564.49NFYC'protein_coding'2454AELoss-6.8716EU ES AB ER9a30.00
15420604.49FNIP2'protein_coding'218DELoss-22.390N/AFNIP2N/A
15520724.47EIF3E'protein_coding'113AELoss-17.543EU E1a_E2a50.00
15620764.47GRIPAP1'protein_coding'939AELoss-5.7610EU AB E23_Db57.14
15720804.47SEC61A2'protein_coding'1641AELoss-5.1011EU AB E17_Dd66.67
15820844.47AC121253.1'protein_coding'46AELoss-11.974EU AB ER1f0
15920904.46EHMT2'protein_coding'1349AELoss-3.728EU AB E5_Aa25.00
16020914.46IGHV5-78'pseudogene'23DELoss-21.990N/AIGHV5-78N/A
16120964.45FUCA2'protein_coding'512AELoss-3.863EU AB E5_Aa100.00
16221054.45KCNQ5'protein_coding'1333AELoss-18.9460EU ES AB IR CE I1_AR220.00
16321064.45ZNF143'protein_coding'1035AELoss-14.9711EU ES AB IR I380.00
16421084.45TTC7A'protein_coding'1447AELoss-4.4711EU ES ER2b30.00
16521104.45POU2AF1'protein_coding'26AELoss-5.952EU I1_SR20
16621164.44BTN2A1'protein_coding'724AELoss-5.5511EU AB CE ER9h33.33
16721194.44HACL1'protein_coding'1335AELoss-4.628EU AB CE I9_AR480.00
16821244.43NR6A1'protein_coding'519AELoss-5.9116EU AB IR CE I2_AR80
16921254.43TMCO4'protein_coding'1138AELoss-5.734EU ER10a0.00
17021274.43ILK'protein_coding'317AELoss-4.265EU AB E12_Da66.67
17121394.43TMEM55B'protein_coding'29AELoss-4.752EU AB E4_Aa0
17221484.42PPP2R4'protein_coding'2754AELoss-3.157EU AB E9_Da33.33
17321554.42NCK2'protein_coding'513AELoss-5.402EU CE ER7b0
17421574.41UNC50'protein_coding'613AELoss-6.677EU AB CE ER5c0.00
17521664.40BTG2'protein_coding'25AELoss-12.335EU AB ER2d50.00
17621674.40TFPI2'protein_coding'310DELoss-21.130N/ATFPI2N/A
17721684.40KPNA2'protein_coding'111AELoss-6.472EU E1a_E2a100.00
17821784.39PSMD9'protein_coding'27AELoss-3.893EU ER5a50.00
17921814.39JARID2'protein_coding'324AELoss-4.839EU AB CE I5_AR8100.00
18021904.39DEAF1'protein_coding'418AELoss-2.763EU ES AB E12_Da0.00
18121934.38PFKFB3'protein_coding'1944AELoss-4.857EU AB CE I2_AR60.00
18221974.38IQWD1'protein_coding'1546AELoss-13.507EU ES AB CE I19_AR60.00
18321984.38C7orf59'protein_coding'1222AELoss-2.669EU ES AB ER4a50.00
18422034.37ARHGAP4'protein_coding'2471AELoss-3.748EU ES AB E16_Da25.00
18522044.37PPP1R10'protein_coding'731AELoss-12.0020EU AB IR I3_AR112.50
18622054.37HECW2'protein_coding'639DELoss-20.719EU ES AB CE HECW233.33
18722194.36AC008105.1'lincRNA'27AELoss-11.742EU E3a_E4a100.00
18822254.36TIMM17B'protein_coding'824AELoss-3.4714EU ES AB E6_Aa60.00
18922294.35SCARB2'protein_coding'214DELoss-11.183EU AB SCARB2100.00
19022304.35ASMTL'protein_coding'620AELoss-3.1911EU AB E9_Aa50.00
19122464.34CREBBP'protein_coding'332AELoss-6.654EU CE I2_AR50.00
19222474.34TET3'protein_coding'519AELoss-4.786EU AB CE I4_AR550.00
19322484.34UNC45A'protein_coding'1244AELoss-2.499EU AB E2_Aa57.14
19422544.33SNUPN'protein_coding'412AELoss-6.602ES CE I7_AR10
19522594.33NDUFB8'protein_coding'615AELoss-2.567EU AB E4_Ab100.00
19622604.33CALCOCO1'protein_coding'622AELoss-5.064EU AB CE E10_Aa100.00
19722664.33URB1'protein_coding'343AELoss-5.2312EU AB IR I5_SR137.50
19822694.32CPT1A'protein_coding'220DELoss-20.010N/ACPT1AN/A
19922704.32ANKRD44'protein_coding'1651AELoss-6.0017EU ES AB IR CE I12_AR533.33
20022864.31TOP3B'protein_coding'2266AELoss-5.577EU AB ER3a0.00
20122934.31RNPEP'protein_coding'1330AELoss-3.655EU AB E5_Aa50.00
20222984.30ANKS1A'protein_coding'329AELoss-5.004EU CE I11_AR250.00
20323004.30ZC3H7B'protein_coding'533AELoss-4.944EU AB ER3a0.00
20423044.30TMEM183A'protein_coding'516AELoss-6.4012EU ES AB ER7b60.00
20523054.29PRKACB'protein_coding'1839DELoss-19.620N/APRKACBN/A
20623064.29BRMS1'protein_coding'314AELoss-3.653EU ES AB E8a_E10b0.00
20723094.29POR'protein_coding'2768AELoss-2.5011EU ES AB E6a_E7a62.50
20823224.28GPR132'protein_coding'26AELoss-4.704EU CE I2_AR250.00
20923284.28SAP30BP'protein_coding'213AELoss-6.232EU CE I3_AR150
21023384.27ARFGAP2'protein_coding'522AELoss-2.754EU AB E12_Aa50.00
21123424.27RP4-697K14.2'protein_coding'730AELoss-3.231AB E3_Dc0
21223544.26UBN1'protein_coding'219AELoss-4.9812EU I7_SR370.00
21323744.25C2orf28'protein_coding'617AELoss-5.995EU AB E2_Da0.00
21423874.24TRAF2'protein_coding'1134AELoss-3.125EU AB E7_Da0.00
21523894.24CARHSP1'protein_coding'26AELoss-4.235EU ES AB E3_Aa66.67
21623974.23BLVRA'protein_coding'517AELoss-3.227EU ES E2a_E4b50.00
21724014.23ACSF3'protein_coding'416AELoss-5.002EU AB E5_Da0
21824034.23RHBDD2'protein_coding'1226AELoss-3.864AB E5_Db0
21924134.22TXNIP'protein_coding'621DELoss-18.670N/ATXNIPN/A
22024144.22NOMO1'protein_coding'234AELoss-6.384EU ER25a0.00
22124244.21MED12'protein_coding'1274AELoss-4.593EU AB CE I35_AR10
22224354.21AGBL5'protein_coding'1137AELoss-6.593EU AB ER17b0.00
22324414.20WDR54'protein_coding'1432AELoss-3.433EU AB E1_Dc0.00
22424454.20MCM3AP'protein_coding'1044AELoss-5.3817EU AB E2_Aa42.86
22524464.20RPL9'protein_coding'312AELoss-4.456EU E7a_E8a40.00
22624494.20ARHGEF1'protein_coding'639AELoss-2.863EU ER15c0.00
22724534.19CUX1'protein_coding'1650AELoss-4.6325EU ES AB E9_Da59.09
22824574.19WBSCR16'protein_coding'417AELoss-3.051AB E3_Aa0
22924614.19CCDC88C'protein_coding'537AELoss-6.008EU AB CE I12_AR140.00
23024664.19METT11D1'protein_coding'216AELoss-4.152EU AB E6_Da0
23124694.19KIAA0146'protein_coding'120AELoss-4.9315EU AB IR CE I11_AR1457.14
23224784.18IGLV3-16'IG_V_gene'12DELoss-18.170N/AIGLV3-16N/A
23324904.17ARHGAP11B'protein_coding'213AELoss-7.776EU AB CE I5_SR1100.00
23424914.17WDR23'protein_coding'627AELoss-4.133EU AB E14_Aa0
23525154.16PTPN7'protein_coding'1943AELoss-3.1614EU AB E8_Db50.00
23625164.16WDR77'protein_coding'620AELoss-4.768EU AB ER11d50.00
23725194.15PYROXD2'protein_coding'526AELoss-9.595EU AB CE E3_Db100.00
23825284.15ST3GAL2'protein_coding'29AELoss-2.832EU AB E7_Da0
23925294.15AL928768.2'pseudogene'13DELoss-17.700N/AAL928768.2N/A
24025344.14IP6K1'protein_coding'919AELoss-4.596EU ES AB E5_Aa66.67
24125354.14CCDC152'protein_coding'29DELoss-17.660N/ACCDC152N/A
24225374.14ELMO1'protein_coding'2463AELoss-5.8711EU AB CE I27_AR333.33
24325434.14FAM127A'protein_coding'34DELoss-17.610N/AFAM127AN/A
24425444.14DENND1C'protein_coding'123AELoss-4.926EU AB E1a_E2a25.00
24525474.14TH1L'protein_coding'1336AELoss-3.587EU ES AB E4b_E5d0.00
24625484.13AC009948.3'processed_transcript'722DELoss-17.570N/AAC009948.3N/A
24725614.12C20orf199'processed_transcript'810AELoss-2.814EU ES AB E5_Aa50.00
24825634.12C6orf106'protein_coding'38AELoss-4.303EU ES CE I3_AR4100.00
24925664.12SMURF1'protein_coding'834AELoss-4.946EU AB E18_Aa0.00
25025674.12CLPTM1L'protein_coding'220AELoss-4.882EU ER17b0.00
25125764.12RGS20'protein_coding'38DELoss-17.350N/ARGS20N/A