Summary page for comparison: 'NBL12_Rel_Left_vs_NBL12_Rel_Right' (HS0382_vs_HS0627) - Project: NeuroEvolution


Download complete candidate list as tab delimited text file: NBL12_Rel_Left_vs_NBL12_Rel_Right.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 6,512 (of 49,867 possible genes)

DE Genes: 2,293

AE Genes: 5,560

Alternative Exon Usage (EU) Genes: 4,425

Alernative Exon Skipping (ES) Genes: 807

Alternative Exon Boundary (AB) Genes: 2,458

Intron Retention (IR) Genes: 285

Cryptic Exon (CE) Genes: 702


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.91IGLV1-44'IG_V_gene'12DELoss-30784.850N/AIGLV1-44N/A
2214.81LL22NC03-80A10.2'protein_coding'418AELoss-823.045EU AB CE E12_Da0
3313.35IGLV2-23'IG_V_gene'24DEGain10411.210N/AIGLV2-23N/A
4413.22IGHV3-23'IG_V_gene'12DELoss-9554.590N/AIGHV3-23N/A
5511.56IGHV3-33'IG_V_gene'12DEGain3009.840N/AIGHV3-33N/A
6610.68IGHV5-51'IG_V_gene'12DEGain1642.460N/AIGHV5-51N/A
779.93IGLV3-19'IG_V_gene'12DEGain975.510N/AIGLV3-19N/A
889.44BCRL4'protein_coding'211AELoss-279.246EU IR Ix50.00
999.27IGLV1-40'IG_V_gene'12DEGain615.360N/AIGLV1-40N/A
10107.54IGLV2-14'IG_V_gene'12DEGain186.620N/AIGLV2-14N/A
11116.67NSD1'protein_coding'632AELoss-12.7414EU CE I4_AR642.86
12126.32MTPN'protein_coding'39AELoss-6.632EU ER4e100.00
13136.25NLRP2'protein_coding'415DEGain76.270N/ANLRP2N/A
14145.82EMILIN1'protein_coding'29DEGain56.590N/AEMILIN1N/A
15155.82TAOK1'protein_coding'120AELoss-7.068EU IR I1_AR50
16165.80ANO6'protein_coding'628AELoss-5.6533EU ES CE I1_SR580.00
17175.80TUBB2B'protein_coding'25DELoss-55.660N/ATUBB2BN/A
18185.74TMEM53'protein_coding'917AEGain6.453EU ENST00000372243100.00
19195.64CRKRS'protein_coding'319AELoss-8.562EU CE I2_AR10
20205.63BCHE'protein_coding'511DELoss-49.390N/ABCHEN/A
21215.57ASH1L'protein_coding'537AELoss-8.4415EU AB IR CE I2_SR30.00
22225.48CCDC51'protein_coding'816AEGain9.662EU AB E3_Ac0
23235.48KIAA2026'protein_coding'211AELoss-8.002CE I4_AR20
24245.48NIPBL'protein_coding'248AEGain26.6015EU E9a_E10a64.29
25255.47AC004687.2'lincRNA'412AELoss-10.2711EU AB IR I3_AR50
26265.45DYRK1A'protein_coding'1337AELoss-5.8230EU ES AB CE I4_AR268.00
27275.42MAP3K1'protein_coding'222AELoss-6.1424EU CE I1_AR277.27
28285.40TBL1XR1'protein_coding'1748AELoss-9.0025EU ES AB IR CE I2_AR116.67
29295.38CDK6'protein_coding'516AELoss-6.5622EU AB CE I5_AR1384.62
30305.37SBNO1'protein_coding'435AELoss-8.605EU AB E15_Da0.00
31315.35ATP6AP1'protein_coding'1130AELoss-17.086EU AB ER1d100.00
32325.33CSGALNACT2'protein_coding'29AELoss-8.002EU I5_SR10
33335.32TLE4'protein_coding'3478AELoss-9.0010EU ES AB CE I18_AR320.00
34345.32IWS1'protein_coding'1654AELoss-8.905EU ES AB ER18b50.00
35355.31CYTH4'protein_coding'1850AELoss-6.1810EU AB E11_Ab40.00
36365.30FAM116A'protein_coding'938AEGain11.069EU AB E10a_E11a33.33
37375.27LUZP1'protein_coding'614AELoss-7.502CE I2_AR60
38385.24ZNF609'protein_coding'211AELoss-7.1220EU CE I1_AR40
39395.24YTHDC2'protein_coding'130AEGain17.3530EU E4a_E5a75.86
40405.24FUT7'protein_coding'12DEGain37.710N/AFUT7N/A
41415.22IKZF2'protein_coding'2035AELoss-6.1538EU ES AB CE I7_AR372.00
42425.21DAG1'protein_coding'1948AEGain9.791AB E8_De0
43435.21GNA13'protein_coding'28AELoss-4.146EU CE I2_AR7100.00
44445.19CASD1'protein_coding'830AEGain15.1412EU ER2c54.55
45455.19NUTF2'protein_coding'15AEGain7.642EU CE I4_AR20
46465.15NLE1'protein_coding'626AELoss-11.002EU ER1b100.00
47475.12AC140134.2'protein_coding'210AELoss-8.184EU AB E2_Aa0
48485.10CASC5'protein_coding'329AELoss-4.0011EU ES AB E11_Dc42.86
49495.10SFMBT2'protein_coding'528AELoss-7.6326EU AB IR CE I6_AR40.00
50505.09NFKBIZ'protein_coding'1130AELoss-7.1411EU ES AB IR CE I2_AR233.33
51515.08F13A1'protein_coding'932DEGain33.9314EU ES AB F13A154.55
52525.06ZMYM4'protein_coding'744AELoss-7.0012EU AB CE I31_AR750.00
53535.05CBLB'protein_coding'1134AELoss-8.019EU CE I4_AR950.00
54545.04RAPGEF6'protein_coding'539AELoss-5.186EU ES CE I4_AR10.00
55555.02MYO9B'protein_coding'243AELoss-9.353EU ER37a100.00
56565.00SIPA1L3'protein_coding'224AELoss-8.029AB CE I11_AR120
57575.00MUC13'protein_coding'524DELoss-31.915EU AB MUC130.00
58584.99SFRS12'protein_coding'317AEGain13.9227EU ES AB IR I3_AR460.00
59594.99NRP1'protein_coding'1841DELoss-31.680N/ANRP1N/A
60604.98PUS10'protein_coding'627AEGain6.967EU AB CE E6_Da75.00
61614.98IGLV1-47'IG_V_gene'12DELoss-31.470N/AIGLV1-47N/A
62624.97WAC'protein_coding'1857AELoss-7.929EU IR CE I6_SR30
63634.97TEP1'protein_coding'362AELoss-6.5510EU AB E8_Aa14.29
64644.95KIAA0556'protein_coding'230AELoss-9.113EU AB ER16a0.00
65654.95AMBRA1'protein_coding'623AEGain9.642EU CE ER2a0
66664.94UBA5'protein_coding'1438AEGain6.5912EU AB E2_Df40.00
67674.92RUNDC1'protein_coding'15AEGain9.181EU E1a_E2a0
68684.91MLLT4'protein_coding'1865AELoss-5.7428EU ES AB IR E9a_E25a71.43
69694.88NCOA2'protein_coding'224AELoss-4.032EU CE I1_AR90
70704.87MLL'protein_coding'745AELoss-4.076EU AB E14_Aa0.00
71714.86ARHGEF7'protein_coding'2156AELoss-6.4113EU ES IR CE I7_SR133.33
72724.85TUSC4'protein_coding'2058AEGain5.728EU AB E1_Di83.33
73734.84TOP2A'protein_coding'557AELoss-4.2422EU ES AB E15a_E16a57.89
74744.82NFATC3'protein_coding'414AELoss-6.393CE I3_AR20
75754.81ALDH9A1'protein_coding'518AEGain16.403EU AB E1_Ab0.00
76764.81IFI16'protein_coding'1329AELoss-5.143EU ER14b50.00
77774.81GSK3B'protein_coding'417AELoss-6.332EU CE I1_AR60
78784.81PPP2CB'protein_coding'312AEGain14.496EU AB E1_Da66.67
79794.80FAR1'protein_coding'215AEGain11.9624EU ES AB IR I6_AR150.00
80804.80JMJD1C'protein_coding'1044AELoss-3.8226EU AB CE I2_AR493.75
81814.79RIF1'protein_coding'1874AELoss-5.3245EU AB CE E8_Aa52.63
82824.78IGLV6-57'IG_V_gene'12DELoss-27.560N/AIGLV6-57N/A
83834.78DENND4A'protein_coding'334AELoss-8.078EU AB CE I1_AR100.00
84844.76PHTF2'protein_coding'1441AELoss-5.9628EU ES AB CE ER21d56.52
85854.75FNBP1'protein_coding'1643AELoss-6.7136EU ES AB IR CE I10.00
86864.74MDN1'protein_coding'7111AELoss-3.9532EU AB E36_Aa41.38
87874.73TNIK'protein_coding'1756AELoss-5.799EU CE I3_AR60.00
88884.73ZNF518A'protein_coding'619AEGain16.9014EU AB ER7a33.33
89894.71ATR'protein_coding'247AEGain17.9130EU E8a_E9a75.86
90904.71CCR9'protein_coding'511DELoss-26.090N/ACCR9N/A
91914.70MTMR3'protein_coding'1346AELoss-7.8511EU ES IR CE Ix33.33
92924.68ARL8B'protein_coding'925AEGain8.795EU AB E3_Da100.00
93934.68TMEM86B'protein_coding'13AEGain7.311AB E2_Aa0
94944.66PPIL2'protein_coding'1658AELoss-9.092EU ER9f100.00
95954.66SLC4A7'protein_coding'2150AELoss-3.527EU ES AB I1_SR20.00
96964.66AAGAB'protein_coding'110AELoss-7.001CE I1_AR50
97974.66ITCH'protein_coding'638AELoss-7.322EU CE I2_AR40
98984.65CIR1'protein_coding'827AEGain5.102EU ER1c100.00
99994.64CCDC152'protein_coding'29AEGain5.0314EU E3a_E4a84.62
1001004.64AC069234.1'protein_coding'316AELoss-8.334CE I1_AR70
1011014.64EIF6'protein_coding'920AEGain5.980N/AENST00000374436N/A
1021024.63GPM6A'protein_coding'310AELoss-4.525EU ENST0000039365875.00
1031034.62ATP13A3'protein_coding'1358AELoss-4.3115EU AB E12_Aa25.00
1041044.62MPP1'protein_coding'1952AELoss-13.055EU AB ER14e100.00
1051054.62UFM1'protein_coding'719AEGain7.842AB E5_Da0
1061064.61MLL3'protein_coding'1899AELoss-4.6937EU ES AB CE E15_Da15.00
1071074.61ZNF148'protein_coding'1133AELoss-7.3317EU ES AB CE I1_AR1314.29
1081084.59ITGB3'protein_coding'216DEGain24.170N/AITGB3N/A
1091094.59KBTBD8'protein_coding'713AEGain10.3516EU AB ER1a45.45
1101104.58ATM'protein_coding'568AELoss-4.3958EU CE I5_AR166.07
1111114.58FGFR1OP2'protein_coding'311AEGain16.521CE I5_AR30
1121124.58ANXA1'protein_coding'927DELoss-23.870N/AANXA1N/A
1131134.57SSH1'protein_coding'418AELoss-5.232CE I2_AR30
1141144.57QKI'protein_coding'814AELoss-4.9512EU ES AB CE I4_AR362.50
1151154.56AC020915.2'processed_transcript'39AEGain5.873EU AB E2_Da0
1161164.56HLTF'protein_coding'1250AELoss-3.6444EU ES AB E17_Da76.32
1171174.55TRNAU1AP'protein_coding'1029AELoss-12.576EU AB ER1e50.00
1181184.55C10orf137'protein_coding'1143AELoss-5.1227EU AB ER26d82.61
1191194.55ZMIZ1'protein_coding'735DEGain23.370N/AZMIZ1N/A
1201204.54IGHV1-24'IG_V_gene'12DELoss-23.310N/AIGHV1-24N/A
1211214.54CCNL1'protein_coding'2662AEGain22.2231EU AB IR E4_Aa33.33
1221224.52DOCK11'protein_coding'358AELoss-2.9044EU AB CE I52_AR565.85
1231234.52FANCD2'protein_coding'1467AELoss-5.7319EU AB E28_Da43.75
1241244.52CD274'protein_coding'518AEGain15.2814EU AB IR E5_Db0.00
1251254.52AC096663.2'pseudogene'24AELoss-6.603EU AB E1_Da0
1261264.51MCOLN2'protein_coding'318AEGain8.538EU AB IR E11_Da100.00
1271274.50POLR2D'protein_coding'512AELoss-5.603EU ER1c100.00
1281284.50ZNF503'protein_coding'514DELoss-22.610N/AZNF503N/A
1291294.50CTDSPL2'protein_coding'215AELoss-5.2012EU CE I11_AR160.00
1301304.49BRAF'protein_coding'528AELoss-6.6715IR CE I8_SR10
1311314.47RPS4Y1'protein_coding'310AEGain6.288IR I5_AR10
1321324.46MAML2'protein_coding'27AELoss-5.1832EU CE I1_AR330
1331334.467SK'misc_RNA'11DELoss-22.040N/A7SKN/A
1341344.46SCP2'protein_coding'1230AEGain8.0819EU ES E11a_E12a61.11
1351354.46PUM1'protein_coding'1449AELoss-5.8210EU ES CE I2_AR150.00
1361364.45MAN1B1'protein_coding'623AEGain6.722AB E10_Da0
1371374.45MED13'protein_coding'234AELoss-4.7628EU AB IR I3_SR10.00
1381384.45ZNF367'protein_coding'15AELoss-4.298EU CE I1_AR275.00
1391394.45PM20D2'protein_coding'17AEGain17.068EU E4a_E5a71.43
1401404.44SIK2'protein_coding'115AELoss-4.825EU CE I3_AR220.00
1411414.43AFF4'protein_coding'1039AELoss-5.5025EU ES AB IR ER6c52.94
1421424.43NCOA3'protein_coding'736AELoss-6.057EU ES CE I1_SR20.00
1431434.42FAM13B'protein_coding'326AELoss-4.7921EU ES IR I10_AR375.00
1441444.42UFD1L'protein_coding'1339AELoss-8.816EU AB ER1f100.00
1451454.42FAM133B'protein_coding'1133AEGain7.624EU AB ER12c0.00
1461464.42C3orf62'protein_coding'410AEGain5.951EU ER1b0
1471474.41SOD2'protein_coding'512AELoss-5.641EU ER1c0
1481484.41R3HDM2'protein_coding'1241AELoss-5.7519EU AB IR I2_AR550.00
1491494.41KIAA1267'protein_coding'216AELoss-6.815EU CE I2_AR40
1501504.39LRBA'protein_coding'158AELoss-7.0043EU CE I2_AR564.86
1511514.39NUP98'protein_coding'1355AELoss-5.2210EU ENST0000048328522.22
1521524.38NUP205'protein_coding'1374AELoss-3.6144EU ES AB ER48e77.50
1531534.38KIAA0240'protein_coding'319AELoss-4.137EU AB IR E13_Aa33.33
1541544.38CHSY1'protein_coding'13AELoss-4.631CE I2_AR30
1551554.37PRPSAP2'protein_coding'1634AEGain5.269EU AB E5_Ae42.86
1561564.37IGHV4-34'IG_V_gene'12DEGain20.700N/AIGHV4-34N/A
1571574.37EIF5'protein_coding'213AEGain9.035EU ES E1a_E4a100.00
1581584.37C22orf39'protein_coding'37AEGain6.036EU ES AB E3_Da50.00
1591594.37ERBB2IP'protein_coding'733AELoss-3.7938EU CE I1_AR891.43
1601604.36SETD2'protein_coding'940AELoss-6.6516EU ES CE I8_SR133.33
1611614.36ZNF197'protein_coding'619AELoss-6.022EU AB E10_Da0
1621624.35ZNF397OS'protein_coding'418AELoss-5.652AB E5_Aa0
1631634.35TXNRD1'protein_coding'623AELoss-5.515EU CE I3_AR40.00
1641644.35B4GALT5'protein_coding'19AELoss-5.398EU CE I1_AR10.00
1651654.34ERMP1'protein_coding'729AEGain6.582AB CE E17_Aa0
1661664.34INO80B'protein_coding'1237AEGain6.621EU ER1d0
1671674.34EXOC4'protein_coding'2461AELoss-5.088EU AB CE I21_AR1166.67
1681684.34FARP1'protein_coding'839AELoss-5.8012EU AB ER20a44.44
1691694.34CCDC150'protein_coding'2471AEGain16.3716EU ES AB ER11a30.77
1701704.34RNase_MRP'misc_RNA'11DELoss-20.240N/ARNase_MRPN/A
1711714.34GINS1'protein_coding'516AELoss-5.931AB E7_Aa0
1721724.33RASSF6'protein_coding'418AEGain5.303EU AB CE ENST000003957770
1731734.33CYBRD1'protein_coding'716AELoss-5.444EU AB ER4a0
1741744.33KDM5A'protein_coding'431AELoss-3.7619EU AB I27_SR175.00
1751754.33NRCAM'protein_coding'2071DEGain20.080N/ANRCAMN/A
1761764.33ZDHHC17'protein_coding'321AEGain11.0727EU ES AB IR CE E5a_E6a70.59
1771774.32CSTF2'protein_coding'629AELoss-6.671EU ER1b0
1781784.32RBL2'protein_coding'224AELoss-3.2517EU AB CE ER8a64.29
1791794.31PHLDB2'protein_coding'1850AELoss-6.318EU AB ER26b16.67
1801804.30AFF1'protein_coding'426AELoss-5.8515EU AB CE I2_AR1620.00
1811814.30IGKV4-1'IG_V_gene'12DELoss-19.660N/AIGKV4-1N/A
1821824.29SRPK1'protein_coding'621AELoss-5.125EU CE I5_AR266.67
1831834.29USP34'protein_coding'27142AELoss-5.1278EU ES AB CE I1_AR365.71
1841844.29TRIP10'protein_coding'1135AELoss-9.573EU AB ER1c100.00
1851854.29BMPR2'protein_coding'625AELoss-3.7819EU AB CE I6_AR380.00
1861864.29ATF7'protein_coding'515AELoss-5.178EU AB CE I2_AR10
1871874.29NFS1'protein_coding'1439AEGain5.194EU ES AB E7_Aa50.00
1881884.27ANKRD28'protein_coding'1758AELoss-5.5116EU ES AB CE I11_SR250.00
1891894.27C20orf194'protein_coding'342AELoss-6.298EU AB CE I2_AR10.00
1901904.27GLS'protein_coding'1547AELoss-4.7713EU AB CE ENST0000040942837.50
1911914.26ATXN7'protein_coding'1236AELoss-5.716EU AB CE I1_AR250.00
1921924.26IFT88'protein_coding'943AEGain8.346EU E6a_E7a40.00
1931934.25NMNAT1'protein_coding'615AEGain5.502AB E6_Aa0
1941944.25G0S2'protein_coding'12DELoss-19.040N/AG0S2N/A
1951954.25MACF1'protein_coding'31160AELoss-4.2161EU AB ER8a52.63
1961964.25MDM2'protein_coding'2236AEGain5.687EU ES E6a_E7a33.33
1971974.25SSBP3'protein_coding'828AELoss-5.001CE I4_AR140
1981984.25ZBTB10'protein_coding'514AEGain7.767EU E4a_E5a66.67
1991994.25NR2C2'protein_coding'1541AELoss-4.685EU ES AB CE I5_AR20.00
2002004.24UBA6'protein_coding'235AEGain11.5229EU E6a_E7a78.57
2012014.24STAG1'protein_coding'849AELoss-5.0012EU ES AB CE I3_AR342.86
2022024.24LRRN3'protein_coding'511DEGain18.880N/ALRRN3N/A
2032034.23SDR39U1'protein_coding'39AEGain5.304EU ES AB E4_Da50.00
2042044.22ZNF589'protein_coding'1024AELoss-6.973EU AB ER6j0
2052054.22YIPF6'protein_coding'719AELoss-5.083EU AB ER1c100.00
2062064.22KIF20B'protein_coding'846AEGain13.1134EU AB E2a_E3a71.88
2072074.21EHBP1'protein_coding'2163AEGain12.7518EU ES AB E10a_E12a28.57
2082084.21BAZ1B'protein_coding'324AELoss-5.231CE I1_AR30
2092094.21TRNT1'protein_coding'1233AELoss-4.909EU AB ER1d50.00
2102104.21AC006504.2'lincRNA'12AEGain6.051CE I1_AR70
2112114.20ATRN'protein_coding'435AEGain8.2415EU AB E1a_E2a61.54
2122124.20APBA3'protein_coding'213AEGain5.181EU E6a_E7b0
2132134.19RNF25'protein_coding'623AELoss-10.782EU ER1c100.00
2142144.19HDAC3'protein_coding'1441AELoss-7.053EU AB E1_Ac100.00
2152154.18USP15'protein_coding'427AELoss-6.027EU ES I8_SR140.00
2162164.18ECHDC2'protein_coding'2052AELoss-3.0739EU AB IR E6_Dc54.17
2172174.18FANCG'protein_coding'830AELoss-5.481EU E1a_E1e0
2182184.17HCK'protein_coding'624DELoss-18.030N/AHCKN/A
2192194.17TRIO'protein_coding'259AELoss-5.0118EU CE I34_AR550.00
2202204.17GPC4'protein_coding'19DELoss-18.000N/AGPC4N/A
2212214.17CCNL2'protein_coding'2158AELoss-12.9410EU AB ER1e57.14
2222224.17AGAP3'protein_coding'2869AEGain6.211AB E2_Ad0
2232234.17HIPK3'protein_coding'319AELoss-4.8322EU ES CE I2_AR673.68
2242244.17HECTD1'protein_coding'451AEGain23.0143EU ES AB E6a_E7a87.80
2252254.16C3orf59'protein_coding'23DELoss-17.930N/AC3orf59N/A
2262264.16RSRC2'protein_coding'620AEGain6.853IR I3_SR10
2272274.16UCHL1'protein_coding'416DEGain17.894EU UCHL133.33
2282284.16RERE'protein_coding'1650AELoss-10.4113EU ES CE I22_SR640.00
2292294.16RNF157'protein_coding'322DELoss-17.8212EU RNF15718.18
2302304.15MAD1L1'protein_coding'2659AEGain5.542EU ENST000004378770.00
2312314.15VPS41'protein_coding'1457AEGain17.3830EU ES AB IR E28_Da53.85
2322324.15RCOR1'protein_coding'112AELoss-3.496EU CE I2_AR50.00
2332334.15SCRN3'protein_coding'1128AEGain12.247EU AB ER1g20.00
2342344.15ALMS1'protein_coding'939AELoss-2.327EU ES AB E23a_E25a50.00
2352354.15SGMS1'protein_coding'619AELoss-4.021CE I4_AR40
2362364.14ZNF292'protein_coding'620AELoss-3.4113EU ES AB CE ER10a55.56
2372374.14BCL2'protein_coding'35AELoss-6.1915AB CE I1_AR30
2382384.13C1orf58'protein_coding'626AEGain5.0911EU AB ER8a62.50
2392394.13JAM3'protein_coding'29DEGain17.530N/AJAM3N/A
2402404.13ANGEL2'protein_coding'819AELoss-3.746EU ES AB E6b_E6b100.00
2412414.13TBC1D20'protein_coding'519AELoss-5.672AB CE I1_AR30
2422424.13ABLIM1'protein_coding'2157AEGain5.433EU E27a_E28a0.00
2432434.12ELF2'protein_coding'616AELoss-4.802AB CE I7_AR10
2442444.12PLA2G16'protein_coding'37DELoss-17.340N/APLA2G16N/A
2452454.11P2RY11'protein_coding'24AEGain6.661ES E1a_E3a0
2462464.11PPP3CA'protein_coding'420AELoss-4.6012EU ES CE I1_SR637.50
2472474.11SNX6'protein_coding'419AELoss-5.612IR I120
2482484.10RSF1'protein_coding'521AELoss-4.905AB CE I1_AR30
2492494.10INTS6'protein_coding'2564AELoss-5.1517EU ES AB CE I6_AR445.45
2502504.10AUTS2'protein_coding'1648DEGain17.120N/AAUTS2N/A
2512514.09PDIK1L'protein_coding'38AEGain8.784EU AB E5_Da100.00


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1214.81LL22NC03-80A10.2'protein_coding'418AELoss-823.045EU AB CE E12_Da0
289.44BCRL4'protein_coding'211AELoss-279.246EU IR Ix50.00
3116.67NSD1'protein_coding'632AELoss-12.7414EU CE I4_AR642.86
4126.32MTPN'protein_coding'39AELoss-6.632EU ER4e100.00
5155.82TAOK1'protein_coding'120AELoss-7.068EU IR I1_AR50
6165.80ANO6'protein_coding'628AELoss-5.6533EU ES CE I1_SR580.00
7185.74TMEM53'protein_coding'917AEGain6.453EU ENST00000372243100.00
8195.64CRKRS'protein_coding'319AELoss-8.562EU CE I2_AR10
9215.57ASH1L'protein_coding'537AELoss-8.4415EU AB IR CE I2_SR30.00
10225.48CCDC51'protein_coding'816AEGain9.662EU AB E3_Ac0
11235.48KIAA2026'protein_coding'211AELoss-8.002CE I4_AR20
12245.48NIPBL'protein_coding'248AEGain26.6015EU E9a_E10a64.29
13255.47AC004687.2'lincRNA'412AELoss-10.2711EU AB IR I3_AR50
14265.45DYRK1A'protein_coding'1337AELoss-5.8230EU ES AB CE I4_AR268.00
15275.42MAP3K1'protein_coding'222AELoss-6.1424EU CE I1_AR277.27
16285.40TBL1XR1'protein_coding'1748AELoss-9.0025EU ES AB IR CE I2_AR116.67
17295.38CDK6'protein_coding'516AELoss-6.5622EU AB CE I5_AR1384.62
18305.37SBNO1'protein_coding'435AELoss-8.605EU AB E15_Da0.00
19315.35ATP6AP1'protein_coding'1130AELoss-17.086EU AB ER1d100.00
20325.33CSGALNACT2'protein_coding'29AELoss-8.002EU I5_SR10
21335.32TLE4'protein_coding'3478AELoss-9.0010EU ES AB CE I18_AR320.00
22345.32IWS1'protein_coding'1654AELoss-8.905EU ES AB ER18b50.00
23355.31CYTH4'protein_coding'1850AELoss-6.1810EU AB E11_Ab40.00
24365.30FAM116A'protein_coding'938AEGain11.069EU AB E10a_E11a33.33
25375.27LUZP1'protein_coding'614AELoss-7.502CE I2_AR60
26385.24ZNF609'protein_coding'211AELoss-7.1220EU CE I1_AR40
27395.24YTHDC2'protein_coding'130AEGain17.3530EU E4a_E5a75.86
28415.22IKZF2'protein_coding'2035AELoss-6.1538EU ES AB CE I7_AR372.00
29425.21DAG1'protein_coding'1948AEGain9.791AB E8_De0
30435.21GNA13'protein_coding'28AELoss-4.146EU CE I2_AR7100.00
31445.19CASD1'protein_coding'830AEGain15.1412EU ER2c54.55
32455.19NUTF2'protein_coding'15AEGain7.642EU CE I4_AR20
33465.15NLE1'protein_coding'626AELoss-11.002EU ER1b100.00
34475.12AC140134.2'protein_coding'210AELoss-8.184EU AB E2_Aa0
35485.10CASC5'protein_coding'329AELoss-4.0011EU ES AB E11_Dc42.86
36495.10SFMBT2'protein_coding'528AELoss-7.6326EU AB IR CE I6_AR40.00
37505.09NFKBIZ'protein_coding'1130AELoss-7.1411EU ES AB IR CE I2_AR233.33
38515.08F13A1'protein_coding'932DEGain33.9314EU ES AB F13A154.55
39525.06ZMYM4'protein_coding'744AELoss-7.0012EU AB CE I31_AR750.00
40535.05CBLB'protein_coding'1134AELoss-8.019EU CE I4_AR950.00
41545.04RAPGEF6'protein_coding'539AELoss-5.186EU ES CE I4_AR10.00
42555.02MYO9B'protein_coding'243AELoss-9.353EU ER37a100.00
43565.00SIPA1L3'protein_coding'224AELoss-8.029AB CE I11_AR120
44575.00MUC13'protein_coding'524DELoss-31.915EU AB MUC130.00
45584.99SFRS12'protein_coding'317AEGain13.9227EU ES AB IR I3_AR460.00
46604.98PUS10'protein_coding'627AEGain6.967EU AB CE E6_Da75.00
47624.97WAC'protein_coding'1857AELoss-7.929EU IR CE I6_SR30
48634.97TEP1'protein_coding'362AELoss-6.5510EU AB E8_Aa14.29
49644.95KIAA0556'protein_coding'230AELoss-9.113EU AB ER16a0.00
50654.95AMBRA1'protein_coding'623AEGain9.642EU CE ER2a0
51664.94UBA5'protein_coding'1438AEGain6.5912EU AB E2_Df40.00
52674.92RUNDC1'protein_coding'15AEGain9.181EU E1a_E2a0
53684.91MLLT4'protein_coding'1865AELoss-5.7428EU ES AB IR E9a_E25a71.43
54694.88NCOA2'protein_coding'224AELoss-4.032EU CE I1_AR90
55704.87MLL'protein_coding'745AELoss-4.076EU AB E14_Aa0.00
56714.86ARHGEF7'protein_coding'2156AELoss-6.4113EU ES IR CE I7_SR133.33
57724.85TUSC4'protein_coding'2058AEGain5.728EU AB E1_Di83.33
58734.84TOP2A'protein_coding'557AELoss-4.2422EU ES AB E15a_E16a57.89
59744.82NFATC3'protein_coding'414AELoss-6.393CE I3_AR20
60754.81ALDH9A1'protein_coding'518AEGain16.403EU AB E1_Ab0.00
61764.81IFI16'protein_coding'1329AELoss-5.143EU ER14b50.00
62774.81GSK3B'protein_coding'417AELoss-6.332EU CE I1_AR60
63784.81PPP2CB'protein_coding'312AEGain14.496EU AB E1_Da66.67
64794.80FAR1'protein_coding'215AEGain11.9624EU ES AB IR I6_AR150.00
65804.80JMJD1C'protein_coding'1044AELoss-3.8226EU AB CE I2_AR493.75
66814.79RIF1'protein_coding'1874AELoss-5.3245EU AB CE E8_Aa52.63
67834.78DENND4A'protein_coding'334AELoss-8.078EU AB CE I1_AR100.00
68844.76PHTF2'protein_coding'1441AELoss-5.9628EU ES AB CE ER21d56.52
69854.75FNBP1'protein_coding'1643AELoss-6.7136EU ES AB IR CE I10.00
70864.74MDN1'protein_coding'7111AELoss-3.9532EU AB E36_Aa41.38
71874.73TNIK'protein_coding'1756AELoss-5.799EU CE I3_AR60.00
72884.73ZNF518A'protein_coding'619AEGain16.9014EU AB ER7a33.33
73894.71ATR'protein_coding'247AEGain17.9130EU E8a_E9a75.86
74914.70MTMR3'protein_coding'1346AELoss-7.8511EU ES IR CE Ix33.33
75924.68ARL8B'protein_coding'925AEGain8.795EU AB E3_Da100.00
76934.68TMEM86B'protein_coding'13AEGain7.311AB E2_Aa0
77944.66PPIL2'protein_coding'1658AELoss-9.092EU ER9f100.00
78954.66SLC4A7'protein_coding'2150AELoss-3.527EU ES AB I1_SR20.00
79964.66AAGAB'protein_coding'110AELoss-7.001CE I1_AR50
80974.66ITCH'protein_coding'638AELoss-7.322EU CE I2_AR40
81984.65CIR1'protein_coding'827AEGain5.102EU ER1c100.00
82994.64CCDC152'protein_coding'29AEGain5.0314EU E3a_E4a84.62
831004.64AC069234.1'protein_coding'316AELoss-8.334CE I1_AR70
841024.63GPM6A'protein_coding'310AELoss-4.525EU ENST0000039365875.00
851034.62ATP13A3'protein_coding'1358AELoss-4.3115EU AB E12_Aa25.00
861044.62MPP1'protein_coding'1952AELoss-13.055EU AB ER14e100.00
871054.62UFM1'protein_coding'719AEGain7.842AB E5_Da0
881064.61MLL3'protein_coding'1899AELoss-4.6937EU ES AB CE E15_Da15.00
891074.61ZNF148'protein_coding'1133AELoss-7.3317EU ES AB CE I1_AR1314.29
901094.59KBTBD8'protein_coding'713AEGain10.3516EU AB ER1a45.45
911104.58ATM'protein_coding'568AELoss-4.3958EU CE I5_AR166.07
921114.58FGFR1OP2'protein_coding'311AEGain16.521CE I5_AR30
931134.57SSH1'protein_coding'418AELoss-5.232CE I2_AR30
941144.57QKI'protein_coding'814AELoss-4.9512EU ES AB CE I4_AR362.50
951154.56AC020915.2'processed_transcript'39AEGain5.873EU AB E2_Da0
961164.56HLTF'protein_coding'1250AELoss-3.6444EU ES AB E17_Da76.32
971174.55TRNAU1AP'protein_coding'1029AELoss-12.576EU AB ER1e50.00
981184.55C10orf137'protein_coding'1143AELoss-5.1227EU AB ER26d82.61
991214.54CCNL1'protein_coding'2662AEGain22.2231EU AB IR E4_Aa33.33
1001224.52DOCK11'protein_coding'358AELoss-2.9044EU AB CE I52_AR565.85
1011234.52FANCD2'protein_coding'1467AELoss-5.7319EU AB E28_Da43.75
1021244.52CD274'protein_coding'518AEGain15.2814EU AB IR E5_Db0.00
1031254.52AC096663.2'pseudogene'24AELoss-6.603EU AB E1_Da0
1041264.51MCOLN2'protein_coding'318AEGain8.538EU AB IR E11_Da100.00
1051274.50POLR2D'protein_coding'512AELoss-5.603EU ER1c100.00
1061294.50CTDSPL2'protein_coding'215AELoss-5.2012EU CE I11_AR160.00
1071304.49BRAF'protein_coding'528AELoss-6.6715IR CE I8_SR10
1081314.47RPS4Y1'protein_coding'310AEGain6.288IR I5_AR10
1091324.46MAML2'protein_coding'27AELoss-5.1832EU CE I1_AR330
1101344.46SCP2'protein_coding'1230AEGain8.0819EU ES E11a_E12a61.11
1111354.46PUM1'protein_coding'1449AELoss-5.8210EU ES CE I2_AR150.00
1121364.45MAN1B1'protein_coding'623AEGain6.722AB E10_Da0
1131374.45MED13'protein_coding'234AELoss-4.7628EU AB IR I3_SR10.00
1141384.45ZNF367'protein_coding'15AELoss-4.298EU CE I1_AR275.00
1151394.45PM20D2'protein_coding'17AEGain17.068EU E4a_E5a71.43
1161404.44SIK2'protein_coding'115AELoss-4.825EU CE I3_AR220.00
1171414.43AFF4'protein_coding'1039AELoss-5.5025EU ES AB IR ER6c52.94
1181424.43NCOA3'protein_coding'736AELoss-6.057EU ES CE I1_SR20.00
1191434.42FAM13B'protein_coding'326AELoss-4.7921EU ES IR I10_AR375.00
1201444.42UFD1L'protein_coding'1339AELoss-8.816EU AB ER1f100.00
1211454.42FAM133B'protein_coding'1133AEGain7.624EU AB ER12c0.00
1221464.42C3orf62'protein_coding'410AEGain5.951EU ER1b0
1231474.41SOD2'protein_coding'512AELoss-5.641EU ER1c0
1241484.41R3HDM2'protein_coding'1241AELoss-5.7519EU AB IR I2_AR550.00
1251494.41KIAA1267'protein_coding'216AELoss-6.815EU CE I2_AR40
1261504.39LRBA'protein_coding'158AELoss-7.0043EU CE I2_AR564.86
1271514.39NUP98'protein_coding'1355AELoss-5.2210EU ENST0000048328522.22
1281524.38NUP205'protein_coding'1374AELoss-3.6144EU ES AB ER48e77.50
1291534.38KIAA0240'protein_coding'319AELoss-4.137EU AB IR E13_Aa33.33
1301544.38CHSY1'protein_coding'13AELoss-4.631CE I2_AR30
1311554.37PRPSAP2'protein_coding'1634AEGain5.269EU AB E5_Ae42.86
1321574.37EIF5'protein_coding'213AEGain9.035EU ES E1a_E4a100.00
1331584.37C22orf39'protein_coding'37AEGain6.036EU ES AB E3_Da50.00
1341594.37ERBB2IP'protein_coding'733AELoss-3.7938EU CE I1_AR891.43
1351604.36SETD2'protein_coding'940AELoss-6.6516EU ES CE I8_SR133.33
1361614.36ZNF197'protein_coding'619AELoss-6.022EU AB E10_Da0
1371624.35ZNF397OS'protein_coding'418AELoss-5.652AB E5_Aa0
1381634.35TXNRD1'protein_coding'623AELoss-5.515EU CE I3_AR40.00
1391644.35B4GALT5'protein_coding'19AELoss-5.398EU CE I1_AR10.00
1401654.34ERMP1'protein_coding'729AEGain6.582AB CE E17_Aa0
1411664.34INO80B'protein_coding'1237AEGain6.621EU ER1d0
1421674.34EXOC4'protein_coding'2461AELoss-5.088EU AB CE I21_AR1166.67
1431684.34FARP1'protein_coding'839AELoss-5.8012EU AB ER20a44.44
1441694.34CCDC150'protein_coding'2471AEGain16.3716EU ES AB ER11a30.77
1451714.34GINS1'protein_coding'516AELoss-5.931AB E7_Aa0
1461724.33RASSF6'protein_coding'418AEGain5.303EU AB CE ENST000003957770
1471734.33CYBRD1'protein_coding'716AELoss-5.444EU AB ER4a0
1481744.33KDM5A'protein_coding'431AELoss-3.7619EU AB I27_SR175.00
1491764.33ZDHHC17'protein_coding'321AEGain11.0727EU ES AB IR CE E5a_E6a70.59
1501774.32CSTF2'protein_coding'629AELoss-6.671EU ER1b0
1511784.32RBL2'protein_coding'224AELoss-3.2517EU AB CE ER8a64.29
1521794.31PHLDB2'protein_coding'1850AELoss-6.318EU AB ER26b16.67
1531804.30AFF1'protein_coding'426AELoss-5.8515EU AB CE I2_AR1620.00
1541824.29SRPK1'protein_coding'621AELoss-5.125EU CE I5_AR266.67
1551834.29USP34'protein_coding'27142AELoss-5.1278EU ES AB CE I1_AR365.71
1561844.29TRIP10'protein_coding'1135AELoss-9.573EU AB ER1c100.00
1571854.29BMPR2'protein_coding'625AELoss-3.7819EU AB CE I6_AR380.00
1581864.29ATF7'protein_coding'515AELoss-5.178EU AB CE I2_AR10
1591874.29NFS1'protein_coding'1439AEGain5.194EU ES AB E7_Aa50.00
1601884.27ANKRD28'protein_coding'1758AELoss-5.5116EU ES AB CE I11_SR250.00
1611894.27C20orf194'protein_coding'342AELoss-6.298EU AB CE I2_AR10.00
1621904.27GLS'protein_coding'1547AELoss-4.7713EU AB CE ENST0000040942837.50
1631914.26ATXN7'protein_coding'1236AELoss-5.716EU AB CE I1_AR250.00
1641924.26IFT88'protein_coding'943AEGain8.346EU E6a_E7a40.00
1651934.25NMNAT1'protein_coding'615AEGain5.502AB E6_Aa0
1661954.25MACF1'protein_coding'31160AELoss-4.2161EU AB ER8a52.63
1671964.25MDM2'protein_coding'2236AEGain5.687EU ES E6a_E7a33.33
1681974.25SSBP3'protein_coding'828AELoss-5.001CE I4_AR140
1691984.25ZBTB10'protein_coding'514AEGain7.767EU E4a_E5a66.67
1701994.25NR2C2'protein_coding'1541AELoss-4.685EU ES AB CE I5_AR20.00
1712004.24UBA6'protein_coding'235AEGain11.5229EU E6a_E7a78.57
1722014.24STAG1'protein_coding'849AELoss-5.0012EU ES AB CE I3_AR342.86
1732034.23SDR39U1'protein_coding'39AEGain5.304EU ES AB E4_Da50.00
1742044.22ZNF589'protein_coding'1024AELoss-6.973EU AB ER6j0
1752054.22YIPF6'protein_coding'719AELoss-5.083EU AB ER1c100.00
1762064.22KIF20B'protein_coding'846AEGain13.1134EU AB E2a_E3a71.88
1772074.21EHBP1'protein_coding'2163AEGain12.7518EU ES AB E10a_E12a28.57
1782084.21BAZ1B'protein_coding'324AELoss-5.231CE I1_AR30
1792094.21TRNT1'protein_coding'1233AELoss-4.909EU AB ER1d50.00
1802104.21AC006504.2'lincRNA'12AEGain6.051CE I1_AR70
1812114.20ATRN'protein_coding'435AEGain8.2415EU AB E1a_E2a61.54
1822124.20APBA3'protein_coding'213AEGain5.181EU E6a_E7b0
1832134.19RNF25'protein_coding'623AELoss-10.782EU ER1c100.00
1842144.19HDAC3'protein_coding'1441AELoss-7.053EU AB E1_Ac100.00
1852154.18USP15'protein_coding'427AELoss-6.027EU ES I8_SR140.00
1862164.18ECHDC2'protein_coding'2052AELoss-3.0739EU AB IR E6_Dc54.17
1872174.18FANCG'protein_coding'830AELoss-5.481EU E1a_E1e0
1882194.17TRIO'protein_coding'259AELoss-5.0118EU CE I34_AR550.00
1892214.17CCNL2'protein_coding'2158AELoss-12.9410EU AB ER1e57.14
1902224.17AGAP3'protein_coding'2869AEGain6.211AB E2_Ad0
1912234.17HIPK3'protein_coding'319AELoss-4.8322EU ES CE I2_AR673.68
1922244.17HECTD1'protein_coding'451AEGain23.0143EU ES AB E6a_E7a87.80
1932264.16RSRC2'protein_coding'620AEGain6.853IR I3_SR10
1942274.16UCHL1'protein_coding'416DEGain17.894EU UCHL133.33
1952284.16RERE'protein_coding'1650AELoss-10.4113EU ES CE I22_SR640.00
1962294.16RNF157'protein_coding'322DELoss-17.8212EU RNF15718.18
1972304.15MAD1L1'protein_coding'2659AEGain5.542EU ENST000004378770.00
1982314.15VPS41'protein_coding'1457AEGain17.3830EU ES AB IR E28_Da53.85
1992324.15RCOR1'protein_coding'112AELoss-3.496EU CE I2_AR50.00
2002334.15SCRN3'protein_coding'1128AEGain12.247EU AB ER1g20.00
2012344.15ALMS1'protein_coding'939AELoss-2.327EU ES AB E23a_E25a50.00
2022354.15SGMS1'protein_coding'619AELoss-4.021CE I4_AR40
2032364.14ZNF292'protein_coding'620AELoss-3.4113EU ES AB CE ER10a55.56
2042374.14BCL2'protein_coding'35AELoss-6.1915AB CE I1_AR30
2052384.13C1orf58'protein_coding'626AEGain5.0911EU AB ER8a62.50
2062404.13ANGEL2'protein_coding'819AELoss-3.746EU ES AB E6b_E6b100.00
2072414.13TBC1D20'protein_coding'519AELoss-5.672AB CE I1_AR30
2082424.13ABLIM1'protein_coding'2157AEGain5.433EU E27a_E28a0.00
2092434.12ELF2'protein_coding'616AELoss-4.802AB CE I7_AR10
2102454.11P2RY11'protein_coding'24AEGain6.661ES E1a_E3a0
2112464.11PPP3CA'protein_coding'420AELoss-4.6012EU ES CE I1_SR637.50
2122474.11SNX6'protein_coding'419AELoss-5.612IR I120
2132484.10RSF1'protein_coding'521AELoss-4.905AB CE I1_AR30
2142494.10INTS6'protein_coding'2564AELoss-5.1517EU ES AB CE I6_AR445.45
2152514.09PDIK1L'protein_coding'38AEGain8.784EU AB E5_Da100.00
2162524.09MYST4'protein_coding'630AELoss-4.595EU CE ER18c100.00
2172534.08SLC12A8'protein_coding'1955AELoss-2.2211EU AB CE E3_Da14.29
2182544.08DNAJC1'protein_coding'622AEGain5.811AB E1_Ae0
2192554.07NEK7'protein_coding'621AEGain11.1321EU ES AB E8a_E9a73.68
2202564.07PHF6'protein_coding'619AEGain10.6116EU AB E1a_E2a58.33
2212574.06NFE2L2'protein_coding'1333AELoss-4.873CE I6_AR10
2222594.06AHNAK'protein_coding'310DEGain16.626EU AB AHNAK33.33
2232604.06AL035420.2'lincRNA'12AELoss-3.191EU ER2a0
2242614.05USP33'protein_coding'1040AELoss-5.839EU ES AB CE I6_AR10.00
2252624.05LGR4'protein_coding'628AEGain8.1334EU AB CE ER2a77.42
2262634.05MAP3K2'protein_coding'321AELoss-3.5626EU AB CE E17_Aa81.82
2272654.05VKORC1L1'protein_coding'25AELoss-4.914AB CE I1_AR20
2282664.05LRCH4'protein_coding'1348AELoss-5.954EU AB E8a_E8b0
2292674.05UTP14C'protein_coding'49AEGain9.854EU AB E4_Da100.00
2302684.05HISPPD1'protein_coding'434AEGain11.2431EU E6a_E7a76.67
2312694.04HIVEP1'protein_coding'826AELoss-4.796EU AB E7_Da50.00
2322704.03WHSC1L1'protein_coding'529AELoss-4.168EU AB E6_Aa20.00
2332714.03CCHCR1'protein_coding'2153AEGain4.591EU ER2b0
2342724.03NSUN4'protein_coding'1026AELoss-4.692EU ER1d100.00
2352734.02LHFPL3'protein_coding'38AEGain5.622AB IR Ix0
2362744.02RAD54L'protein_coding'1239AELoss-5.304EU AB E1_Ae0.00
2372754.02OGT'protein_coding'1246AEGain9.4015EU ES AB E6b_E6d33.33
2382764.01ABCC5'protein_coding'1659AELoss-4.758EU AB ER35c50.00
2392774.01C20orf111'protein_coding'27AEGain6.249AB CE E2_Da0
2402794.01ZNF318'protein_coding'211AELoss-3.171CE I4_AR30
2412804.01R3HDM1'protein_coding'2367AELoss-4.9327EU ES AB CE ER32c57.14
2422814.00CLDND1'protein_coding'710AEGain6.074IR CE I3_AR20
2432824.00UBR1'protein_coding'249AELoss-4.026EU AB E13_Aa25.00
2442834.00FMR1'protein_coding'1340AELoss-4.5117EU ES AB CE ENST0000037047525.00
2452843.99TTC3'protein_coding'2589AELoss-3.9371EU ES AB IR E7_Db72.88
2462853.99UEVLD'protein_coding'514AELoss-4.493EU CE ER7a0.00
2472863.99NUP50'protein_coding'2350AELoss-4.8510EU ES AB E4_Aa66.67
2482873.99KIF3A'protein_coding'1037AELoss-4.937EU AB ER22f0.00
2492883.99RASSF3'protein_coding'25AELoss-3.7711IR I1_AR160
2502893.98TET2'protein_coding'515AELoss-3.389EU AB IR I6_SR10.00
2512903.98ZNFX1'protein_coding'828AELoss-4.704EU AB E13_Aa0.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1313.35IGLV2-23'IG_V_gene'24DEGain10411.210N/AIGLV2-23N/A
2511.56IGHV3-33'IG_V_gene'12DEGain3009.840N/AIGHV3-33N/A
3610.68IGHV5-51'IG_V_gene'12DEGain1642.460N/AIGHV5-51N/A
479.93IGLV3-19'IG_V_gene'12DEGain975.510N/AIGLV3-19N/A
599.27IGLV1-40'IG_V_gene'12DEGain615.360N/AIGLV1-40N/A
6107.54IGLV2-14'IG_V_gene'12DEGain186.620N/AIGLV2-14N/A
7136.25NLRP2'protein_coding'415DEGain76.270N/ANLRP2N/A
8145.82EMILIN1'protein_coding'29DEGain56.590N/AEMILIN1N/A
9185.74TMEM53'protein_coding'917AEGain6.453EU ENST00000372243100.00
10225.48CCDC51'protein_coding'816AEGain9.662EU AB E3_Ac0
11245.48NIPBL'protein_coding'248AEGain26.6015EU E9a_E10a64.29
12365.30FAM116A'protein_coding'938AEGain11.069EU AB E10a_E11a33.33
13395.24YTHDC2'protein_coding'130AEGain17.3530EU E4a_E5a75.86
14405.24FUT7'protein_coding'12DEGain37.710N/AFUT7N/A
15425.21DAG1'protein_coding'1948AEGain9.791AB E8_De0
16445.19CASD1'protein_coding'830AEGain15.1412EU ER2c54.55
17455.19NUTF2'protein_coding'15AEGain7.642EU CE I4_AR20
18515.08F13A1'protein_coding'932DEGain33.9314EU ES AB F13A154.55
19584.99SFRS12'protein_coding'317AEGain13.9227EU ES AB IR I3_AR460.00
20604.98PUS10'protein_coding'627AEGain6.967EU AB CE E6_Da75.00
21654.95AMBRA1'protein_coding'623AEGain9.642EU CE ER2a0
22664.94UBA5'protein_coding'1438AEGain6.5912EU AB E2_Df40.00
23674.92RUNDC1'protein_coding'15AEGain9.181EU E1a_E2a0
24724.85TUSC4'protein_coding'2058AEGain5.728EU AB E1_Di83.33
25754.81ALDH9A1'protein_coding'518AEGain16.403EU AB E1_Ab0.00
26784.81PPP2CB'protein_coding'312AEGain14.496EU AB E1_Da66.67
27794.80FAR1'protein_coding'215AEGain11.9624EU ES AB IR I6_AR150.00
28884.73ZNF518A'protein_coding'619AEGain16.9014EU AB ER7a33.33
29894.71ATR'protein_coding'247AEGain17.9130EU E8a_E9a75.86
30924.68ARL8B'protein_coding'925AEGain8.795EU AB E3_Da100.00
31934.68TMEM86B'protein_coding'13AEGain7.311AB E2_Aa0
32984.65CIR1'protein_coding'827AEGain5.102EU ER1c100.00
33994.64CCDC152'protein_coding'29AEGain5.0314EU E3a_E4a84.62
341014.64EIF6'protein_coding'920AEGain5.980N/AENST00000374436N/A
351054.62UFM1'protein_coding'719AEGain7.842AB E5_Da0
361084.59ITGB3'protein_coding'216DEGain24.170N/AITGB3N/A
371094.59KBTBD8'protein_coding'713AEGain10.3516EU AB ER1a45.45
381114.58FGFR1OP2'protein_coding'311AEGain16.521CE I5_AR30
391154.56AC020915.2'processed_transcript'39AEGain5.873EU AB E2_Da0
401194.55ZMIZ1'protein_coding'735DEGain23.370N/AZMIZ1N/A
411214.54CCNL1'protein_coding'2662AEGain22.2231EU AB IR E4_Aa33.33
421244.52CD274'protein_coding'518AEGain15.2814EU AB IR E5_Db0.00
431264.51MCOLN2'protein_coding'318AEGain8.538EU AB IR E11_Da100.00
441314.47RPS4Y1'protein_coding'310AEGain6.288IR I5_AR10
451344.46SCP2'protein_coding'1230AEGain8.0819EU ES E11a_E12a61.11
461364.45MAN1B1'protein_coding'623AEGain6.722AB E10_Da0
471394.45PM20D2'protein_coding'17AEGain17.068EU E4a_E5a71.43
481454.42FAM133B'protein_coding'1133AEGain7.624EU AB ER12c0.00
491464.42C3orf62'protein_coding'410AEGain5.951EU ER1b0
501554.37PRPSAP2'protein_coding'1634AEGain5.269EU AB E5_Ae42.86
511564.37IGHV4-34'IG_V_gene'12DEGain20.700N/AIGHV4-34N/A
521574.37EIF5'protein_coding'213AEGain9.035EU ES E1a_E4a100.00
531584.37C22orf39'protein_coding'37AEGain6.036EU ES AB E3_Da50.00
541654.34ERMP1'protein_coding'729AEGain6.582AB CE E17_Aa0
551664.34INO80B'protein_coding'1237AEGain6.621EU ER1d0
561694.34CCDC150'protein_coding'2471AEGain16.3716EU ES AB ER11a30.77
571724.33RASSF6'protein_coding'418AEGain5.303EU AB CE ENST000003957770
581754.33NRCAM'protein_coding'2071DEGain20.080N/ANRCAMN/A
591764.33ZDHHC17'protein_coding'321AEGain11.0727EU ES AB IR CE E5a_E6a70.59
601874.29NFS1'protein_coding'1439AEGain5.194EU ES AB E7_Aa50.00
611924.26IFT88'protein_coding'943AEGain8.346EU E6a_E7a40.00
621934.25NMNAT1'protein_coding'615AEGain5.502AB E6_Aa0
631964.25MDM2'protein_coding'2236AEGain5.687EU ES E6a_E7a33.33
641984.25ZBTB10'protein_coding'514AEGain7.767EU E4a_E5a66.67
652004.24UBA6'protein_coding'235AEGain11.5229EU E6a_E7a78.57
662024.24LRRN3'protein_coding'511DEGain18.880N/ALRRN3N/A
672034.23SDR39U1'protein_coding'39AEGain5.304EU ES AB E4_Da50.00
682064.22KIF20B'protein_coding'846AEGain13.1134EU AB E2a_E3a71.88
692074.21EHBP1'protein_coding'2163AEGain12.7518EU ES AB E10a_E12a28.57
702104.21AC006504.2'lincRNA'12AEGain6.051CE I1_AR70
712114.20ATRN'protein_coding'435AEGain8.2415EU AB E1a_E2a61.54
722124.20APBA3'protein_coding'213AEGain5.181EU E6a_E7b0
732224.17AGAP3'protein_coding'2869AEGain6.211AB E2_Ad0
742244.17HECTD1'protein_coding'451AEGain23.0143EU ES AB E6a_E7a87.80
752264.16RSRC2'protein_coding'620AEGain6.853IR I3_SR10
762274.16UCHL1'protein_coding'416DEGain17.894EU UCHL133.33
772304.15MAD1L1'protein_coding'2659AEGain5.542EU ENST000004378770.00
782314.15VPS41'protein_coding'1457AEGain17.3830EU ES AB IR E28_Da53.85
792334.15SCRN3'protein_coding'1128AEGain12.247EU AB ER1g20.00
802384.13C1orf58'protein_coding'626AEGain5.0911EU AB ER8a62.50
812394.13JAM3'protein_coding'29DEGain17.530N/AJAM3N/A
822424.13ABLIM1'protein_coding'2157AEGain5.433EU E27a_E28a0.00
832454.11P2RY11'protein_coding'24AEGain6.661ES E1a_E3a0
842504.10AUTS2'protein_coding'1648DEGain17.120N/AAUTS2N/A
852514.09PDIK1L'protein_coding'38AEGain8.784EU AB E5_Da100.00
862544.08DNAJC1'protein_coding'622AEGain5.811AB E1_Ae0
872554.07NEK7'protein_coding'621AEGain11.1321EU ES AB E8a_E9a73.68
882564.07PHF6'protein_coding'619AEGain10.6116EU AB E1a_E2a58.33
892584.06CDC42BPA'protein_coding'1557DEGain16.690N/ACDC42BPAN/A
902594.06AHNAK'protein_coding'310DEGain16.626EU AB AHNAK33.33
912624.05LGR4'protein_coding'628AEGain8.1334EU AB CE ER2a77.42
922644.05FYN'protein_coding'1949DEGain16.570N/AFYNN/A
932674.05UTP14C'protein_coding'49AEGain9.854EU AB E4_Da100.00
942684.05HISPPD1'protein_coding'434AEGain11.2431EU E6a_E7a76.67
952714.03CCHCR1'protein_coding'2153AEGain4.591EU ER2b0
962734.02LHFPL3'protein_coding'38AEGain5.622AB IR Ix0
972754.02OGT'protein_coding'1246AEGain9.4015EU ES AB E6b_E6d33.33
982774.01C20orf111'protein_coding'27AEGain6.249AB CE E2_Da0
992814.00CLDND1'protein_coding'710AEGain6.074IR CE I3_AR20
1002913.98GMEB1'protein_coding'620AEGain5.981AB E10_Db0
1012943.97CEP170'protein_coding'2158AEGain17.4227EU AB CE E7a_E8a65.00
1022973.97OGDHL'protein_coding'631DEGain15.690N/AOGDHLN/A
1032983.97AC130686.3'protein_coding'517AEGain5.362EU AB ER6a0
1043013.95STARD13'protein_coding'925DEGain15.500N/ASTARD13N/A
1053163.92FOXN2'protein_coding'414AEGain22.2417EU AB E3_Ab75.00
1063203.91SEC61A2'protein_coding'1641AEGain5.589EU AB CE E7_Da0.00
1073253.90GAS2L3'protein_coding'18DEGain14.950N/AGAS2L3N/A
1083263.90SNX22'protein_coding'28AEGain6.011AB E3_Da0
1093273.90FAM3C'protein_coding'724AEGain5.193CE I10_AR20
1103323.89APAF1'protein_coding'427AEGain9.5420EU E17a_E18a52.63
1113333.89TUG1'protein_coding'410AEGain10.8315EU ES AB E1_Ab75.00
1123343.89CRY1'protein_coding'215DEGain14.820N/ACRY1N/A
1133373.88CCBL1'protein_coding'1137AEGain5.733EU AB ER18b0.00
1143383.88SLC39A10'protein_coding'1031AEGain13.8629EU ES AB CE ER8a52.38
1153403.88GLI4'protein_coding'412AEGain4.731AB E2_Ab0
1163413.88MGLL'protein_coding'1429AEGain4.770N/AENST00000398104N/A
1173493.86LY9'protein_coding'1541AEGain5.301EU E6b_E7a0
1183513.86RGS20'protein_coding'38DEGain14.540N/ARGS20N/A
1193563.86GUSBL2'processed_transcript'616AEGain5.483EU AB E1_Ac0.00
1203603.85LYPLAL1'protein_coding'1223AEGain4.139EU CE I6_AR766.67
1213613.85SMARCA2'protein_coding'2168AEGain10.457EU E8c_E9a33.33
1223623.85TASP1'protein_coding'822AEGain5.251EU E8a_E9a0
1233673.83MPP5'protein_coding'115AEGain7.356EU CE E10a_E11a75.00
1243703.83AGBL5'protein_coding'1137AEGain6.234EU IR ER4c100.00
1253713.83RP11-397O8.2'processed_transcript'13DEGain14.220N/ARP11-397O8.2N/A
1263763.82KLHL13'protein_coding'716DEGain14.160N/AKLHL13N/A
1273773.82C7orf50'protein_coding'1022AEGain3.627EU AB E6_Da100.00
1283783.82CAPN2'protein_coding'1443AEGain10.379EU ER3b25.00
1293823.80ZFY'protein_coding'817AEGain9.4012EU AB E4b_E5a55.56
1303833.80NARG1'protein_coding'733AEGain6.9517EU ES AB E6a_E7a73.33
1313843.80CEP120'protein_coding'425AEGain14.3911EU ES AB E7a_E8a66.67
1323853.80ALPL'protein_coding'622DEGain13.920N/AALPLN/A
1333883.79ARHGAP20'protein_coding'319DEGain13.830N/AARHGAP20N/A
1343903.78GK'protein_coding'1542AEGain9.5016EU ES AB E5a_E9a28.57
1353953.78RPL28'protein_coding'59AEGain4.953EU E2a_E3a0.00
1363963.77NT5C2'protein_coding'1641AEGain4.434EU ES I14_SR150.00
1373983.77AC016683.1'processed_transcript'822DEGain13.650N/AAC016683.1N/A
1384013.77C3orf64'protein_coding'833AEGain13.8910EU AB CE E3a_E4a40.00
1394023.77C21orf66'protein_coding'1138AEGain10.9425EU AB IR I6_AR150.00
1404073.76FAM101B'protein_coding'12DEGain13.540N/AFAM101BN/A
1414083.76TTC37'protein_coding'143AEGain8.2834EU E13a_E14a84.85
1424093.76EFCAB7'protein_coding'726AEGain5.618EU ES AB E1_Da25.00
1434103.76C10orf18'protein_coding'1239AEGain19.7740EU AB ENST0000048083973.53
1444113.75AC106782.7'protein_coding'214AEGain4.731EU ER7a0
1454173.75AC008850.2'processed_transcript'12AEGain4.791AB E2_Aa0
1464243.73GIMAP6'protein_coding'613DEGain13.290N/AGIMAP6N/A
1474263.72C14orf43'protein_coding'1233AEGain8.561AB E16_Da0
1484273.72TTLL3'protein_coding'40100AEGain4.836EU ES AB E12d_E17b0.00
1494283.72RTTN'protein_coding'350AEGain15.5928EU E17a_E18a66.67
1504323.72ASPM'protein_coding'535AEGain27.6238EU AB E11a_E12a85.71
1514333.70LRP12'protein_coding'27AEGain4.880N/AENST00000276654N/A
1524343.70MICA'protein_coding'1224AEGain3.941AB E2_Aa0
1534423.69HELLS'protein_coding'1442AEGain4.269EU AB IR E2_Ab0.00
1544463.68TEAD4'protein_coding'416DEGain12.830N/ATEAD4N/A
1554573.66ASXL1'protein_coding'829AEGain10.576EU ES E9a_E10a40.00
1564583.66HAUS6'protein_coding'424AEGain11.1611EU AB E14a_E15a55.56
1574613.66RAB9A'protein_coding'25AEGain5.300N/AENST00000243325N/A
1584623.65MDFIC'protein_coding'717AEGain11.455EU AB CE I7_SR50
1594633.65ANKRD49'protein_coding'13AEGain4.952EU AB E2_Da0
1604653.65LAX1'protein_coding'411DEGain12.560N/ALAX1N/A
1614673.65TMEM2'protein_coding'837DEGain12.5515EU AB TMEM261.54
1624683.65ZNF195'protein_coding'716AEGain4.541AB E5_Da0
1634693.65MTX3'protein_coding'314AEGain10.8014EU AB E6a_E7a60.00
1644703.64NFYB'protein_coding'18AEGain5.172CE I1_AR20
1654713.63SFRS11'protein_coding'2052AEGain6.7633EU AB IR E4_Da45.45
1664743.62VEGFC'protein_coding'17DEGain12.340N/AVEGFCN/A
1674763.62CHD1'protein_coding'237AEGain8.4528EU E4a_E5a88.89
1684793.62WDR27'protein_coding'1546AEGain8.499EU AB IR CE E5_Da0
1694803.62ZFP161'protein_coding'25AEGain7.602EU ER2a100.00
1704823.61DPP8'protein_coding'929AEGain10.988EU E12a_E13a42.86
1714833.61AGL'protein_coding'942AEGain9.1640EU ES AB E18a_E19a73.68
1724843.61ITGAV'protein_coding'944AEGain16.2949EU ES AB E13a_E14a67.39
1734853.60TBC1D12'protein_coding'318AEGain6.277EU ES E8a_E9b16.67
1744863.60ETNK1'protein_coding'312AEGain4.378EU CE I5_AR60
1754873.60C20orf12'protein_coding'1245AEGain7.643EU AB ER1c0.00
1764883.59ZFAT'protein_coding'422AEGain4.917EU E6a_E7a50.00
1774903.59NR1D2'protein_coding'619AEGain7.405EU ES E6b_E8b50.00
1784913.59PDCD6IP'protein_coding'1855AEGain6.8237EU ES AB IR E9_Aa52.63
1794923.59PAPOLG'protein_coding'837AEGain7.8715EU AB E18a_E19a33.33
1804943.59TGFB1I1'protein_coding'314DEGain12.020N/ATGFB1I1N/A
1814953.59CA5BP'protein_coding'819AEGain5.274EU AB E12_Dc100.00
1824963.58CENPE'protein_coding'352AEGain18.7729EU E11a_E12a82.14
1834993.58BEX4'protein_coding'25DEGain11.920N/ABEX4N/A
1845063.56ERCC3'protein_coding'1342AEGain8.059EU AB E4_Aa0.00
1855103.56UBAC2'protein_coding'1327AEGain4.662EU AB E14_Da0
1865123.56FAM128B'protein_coding'817AEGain4.251AB E1_Db0
1875133.55ATG16L2'protein_coding'321AEGain5.104AB CE E4_Aa0
1885173.54PPP1R12B'protein_coding'2256AEGain4.693EU AB ER9b0.00
1895183.54CYP1A1'protein_coding'411DEGain11.640N/ACYP1A1N/A
1905233.54GEN1'protein_coding'216AEGain7.1024EU E4a_E5a95.65
1915263.53TOP2B'protein_coding'852AEGain13.2432EU AB IR E2_Ac55.56
1925273.53GPD2'protein_coding'1239AEGain8.7231EU ES AB E17a_E18a73.08
1935283.53VAMP3'protein_coding'38AEGain4.021I1_SR10
1945293.52SLC25A36'protein_coding'412AEGain7.6418EU AB IR CE I5_AR191.67
1955303.52DMXL2'protein_coding'347DEGain7.0538EU DMXL275.68
1965313.52PHOSPHO2'protein_coding'514AEGain3.921EU ER4a0
1975333.52DRAM2'protein_coding'1132AEGain3.837EU IR CE I7_SR10
1985343.52SPAG1'protein_coding'220AEGain5.426EU E3a_E4a60.00
1995363.52DDHD2'protein_coding'322AEGain8.3411EU ES E1a_E3a60.00
2005373.52C6orf170'protein_coding'851AEGain7.606EU E2a_E3a20.00
2015383.52ATP8A1'protein_coding'341AEGain14.5155EU ES IR E5a_E6a84.00
2025403.52EEF1E1'protein_coding'38AEGain3.868CE I4_AR40
2035423.51RNASET2'protein_coding'1240AEGain4.226EU AB E14_Ac50.00
2045433.51NUDT5'protein_coding'927AEGain4.342EU AB E11_Aa0
2055443.51CCDC132'protein_coding'2069AEGain8.1323EU ES AB E4a_E5a52.38
2065493.50ZNF813'protein_coding'38AEGain8.912EU AB ER1b0
2075503.50TCF4'protein_coding'426AEGain10.837EU ES CE ER9a60.00
2085543.50ARHGEF12'protein_coding'241AEGain20.8250EU ES ENST0000035664175.51
2095593.50SP110'protein_coding'1751AEGain8.316EU AB ER25d50.00
2105603.49PTBP2'protein_coding'1432AEGain4.828EU AB CE E10_Ac60.00
2115613.49UBE4A'protein_coding'223AEGain8.5618EU E9a_E10a64.71
2125633.49RNF2'protein_coding'413AEGain7.181EU ER1b0
2135693.48UROD'protein_coding'2247AEGain3.983EU AB E1_Ah100.00
2145703.47BRCA2'protein_coding'230AEGain19.1718EU AB ER6a68.75
2155713.47ZKSCAN2'protein_coding'17AEGain5.652EU E2a_E3a100.00
2165723.47CYorf15B'protein_coding'310AEGain8.339EU AB IR E3_Da0.00
2175733.47CLASP2'protein_coding'2590AEGain10.6351EU ES AB CE E16_Db57.78
2185743.47HMGN1'protein_coding'2146AEGain9.5520EU AB E4_Dd20.00
2195763.47AMMECR1'protein_coding'516AEGain8.9810EU ES AB E10_Db37.50
2205783.47C1orf27'protein_coding'621AEGain3.703EU E3a_E4a0.00
2215803.46HNRNPA3'protein_coding'1137AEGain5.5517EU AB E1_Ah58.33
2225863.45LRRK2'protein_coding'968AEGain4.1957EU AB IR CE E8a_E9a65.22
2235873.45CAMK2D'protein_coding'1032AEGain7.889EU ES AB ENST0000045426557.14
2245903.45AP005117.2'protein_coding'19DEGain10.921EU AP005117.20
2255913.45C14orf106'protein_coding'935AEGain12.7716EU AB E1_Ad58.33
2265943.44PDCD6'protein_coding'420AEGain13.1819EU ES AB CE ENST0000044894987.50
2275963.44IBTK'protein_coding'537AEGain8.2623EU ER3a95.45
2285973.44HHEX'protein_coding'38DEGain10.841EU HHEX0
2295983.44TDRD7'protein_coding'321AEGain6.945EU E2a_E3a25.00
2305993.44RAPGEF5'protein_coding'1453AEGain9.5920EU ES AB ER28b33.33
2316013.44TRA2A'protein_coding'928AEGain7.1516EU AB IR ER1c0.00
2326023.43STAU2'protein_coding'317AEGain10.807EU ES E4a_E5a16.67
2336033.43CD44'protein_coding'1725AEGain12.224EU AB E19_Db0.00
2346043.43FUS'protein_coding'1236AEGain4.019EU AB IR CE E8_Da0
2356083.42DENND4C'protein_coding'846AEGain6.8336EU AB E16a_E17a76.47
2366093.42TSC1'protein_coding'833AEGain8.076EU AB E7_Aa0.00
2376163.42SACS'protein_coding'920DEGain10.670N/ASACSN/A
2386173.42CR1'protein_coding'1055DEGain10.670N/ACR1N/A
2396183.41DLG4'protein_coding'1447AEGain11.243EU AB ENST000004917530.00
2406213.41DCP2'protein_coding'211AEGain12.7115EU E3a_E4a85.71
2416223.41MYNN'protein_coding'39AEGain8.211AB E5_Da0
2426233.41ARHGEF17'protein_coding'121DEGain10.610N/AARHGEF17N/A
2436243.41SLFN11'protein_coding'819DEGain6.614EU AB CE SLFN11100.00
2446263.40SLITRK5'protein_coding'12DEGain10.580N/ASLITRK5N/A
2456273.40DLEU2'processed_transcript'823AEGain4.6512EU ES AB IR E2_Ad66.67
2466283.40AC092580.2'processed_transcript'12DEGain10.570N/AAC092580.2N/A
2476303.40B4GALT6'protein_coding'311AEGain8.1113EU AB ER2a90.91
2486323.40PHF16'protein_coding'518DEGain10.550N/APHF16N/A
2496333.40SLC41A3'protein_coding'620AEGain3.941CE I6_AR20
2506363.40AC103702.2'processed_transcript'17AEGain4.401AB E6_Aa0
2516403.39SCML1'protein_coding'818AEGain8.0213EU AB IR I2_AR225.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1114.91IGLV1-44'IG_V_gene'12DELoss-30784.850N/AIGLV1-44N/A
2214.81LL22NC03-80A10.2'protein_coding'418AELoss-823.045EU AB CE E12_Da0
3413.22IGHV3-23'IG_V_gene'12DELoss-9554.590N/AIGHV3-23N/A
489.44BCRL4'protein_coding'211AELoss-279.246EU IR Ix50.00
5116.67NSD1'protein_coding'632AELoss-12.7414EU CE I4_AR642.86
6126.32MTPN'protein_coding'39AELoss-6.632EU ER4e100.00
7155.82TAOK1'protein_coding'120AELoss-7.068EU IR I1_AR50
8165.80ANO6'protein_coding'628AELoss-5.6533EU ES CE I1_SR580.00
9175.80TUBB2B'protein_coding'25DELoss-55.660N/ATUBB2BN/A
10195.64CRKRS'protein_coding'319AELoss-8.562EU CE I2_AR10
11205.63BCHE'protein_coding'511DELoss-49.390N/ABCHEN/A
12215.57ASH1L'protein_coding'537AELoss-8.4415EU AB IR CE I2_SR30.00
13235.48KIAA2026'protein_coding'211AELoss-8.002CE I4_AR20
14255.47AC004687.2'lincRNA'412AELoss-10.2711EU AB IR I3_AR50
15265.45DYRK1A'protein_coding'1337AELoss-5.8230EU ES AB CE I4_AR268.00
16275.42MAP3K1'protein_coding'222AELoss-6.1424EU CE I1_AR277.27
17285.40TBL1XR1'protein_coding'1748AELoss-9.0025EU ES AB IR CE I2_AR116.67
18295.38CDK6'protein_coding'516AELoss-6.5622EU AB CE I5_AR1384.62
19305.37SBNO1'protein_coding'435AELoss-8.605EU AB E15_Da0.00
20315.35ATP6AP1'protein_coding'1130AELoss-17.086EU AB ER1d100.00
21325.33CSGALNACT2'protein_coding'29AELoss-8.002EU I5_SR10
22335.32TLE4'protein_coding'3478AELoss-9.0010EU ES AB CE I18_AR320.00
23345.32IWS1'protein_coding'1654AELoss-8.905EU ES AB ER18b50.00
24355.31CYTH4'protein_coding'1850AELoss-6.1810EU AB E11_Ab40.00
25375.27LUZP1'protein_coding'614AELoss-7.502CE I2_AR60
26385.24ZNF609'protein_coding'211AELoss-7.1220EU CE I1_AR40
27415.22IKZF2'protein_coding'2035AELoss-6.1538EU ES AB CE I7_AR372.00
28435.21GNA13'protein_coding'28AELoss-4.146EU CE I2_AR7100.00
29465.15NLE1'protein_coding'626AELoss-11.002EU ER1b100.00
30475.12AC140134.2'protein_coding'210AELoss-8.184EU AB E2_Aa0
31485.10CASC5'protein_coding'329AELoss-4.0011EU ES AB E11_Dc42.86
32495.10SFMBT2'protein_coding'528AELoss-7.6326EU AB IR CE I6_AR40.00
33505.09NFKBIZ'protein_coding'1130AELoss-7.1411EU ES AB IR CE I2_AR233.33
34525.06ZMYM4'protein_coding'744AELoss-7.0012EU AB CE I31_AR750.00
35535.05CBLB'protein_coding'1134AELoss-8.019EU CE I4_AR950.00
36545.04RAPGEF6'protein_coding'539AELoss-5.186EU ES CE I4_AR10.00
37555.02MYO9B'protein_coding'243AELoss-9.353EU ER37a100.00
38565.00SIPA1L3'protein_coding'224AELoss-8.029AB CE I11_AR120
39575.00MUC13'protein_coding'524DELoss-31.915EU AB MUC130.00
40594.99NRP1'protein_coding'1841DELoss-31.680N/ANRP1N/A
41614.98IGLV1-47'IG_V_gene'12DELoss-31.470N/AIGLV1-47N/A
42624.97WAC'protein_coding'1857AELoss-7.929EU IR CE I6_SR30
43634.97TEP1'protein_coding'362AELoss-6.5510EU AB E8_Aa14.29
44644.95KIAA0556'protein_coding'230AELoss-9.113EU AB ER16a0.00
45684.91MLLT4'protein_coding'1865AELoss-5.7428EU ES AB IR E9a_E25a71.43
46694.88NCOA2'protein_coding'224AELoss-4.032EU CE I1_AR90
47704.87MLL'protein_coding'745AELoss-4.076EU AB E14_Aa0.00
48714.86ARHGEF7'protein_coding'2156AELoss-6.4113EU ES IR CE I7_SR133.33
49734.84TOP2A'protein_coding'557AELoss-4.2422EU ES AB E15a_E16a57.89
50744.82NFATC3'protein_coding'414AELoss-6.393CE I3_AR20
51764.81IFI16'protein_coding'1329AELoss-5.143EU ER14b50.00
52774.81GSK3B'protein_coding'417AELoss-6.332EU CE I1_AR60
53804.80JMJD1C'protein_coding'1044AELoss-3.8226EU AB CE I2_AR493.75
54814.79RIF1'protein_coding'1874AELoss-5.3245EU AB CE E8_Aa52.63
55824.78IGLV6-57'IG_V_gene'12DELoss-27.560N/AIGLV6-57N/A
56834.78DENND4A'protein_coding'334AELoss-8.078EU AB CE I1_AR100.00
57844.76PHTF2'protein_coding'1441AELoss-5.9628EU ES AB CE ER21d56.52
58854.75FNBP1'protein_coding'1643AELoss-6.7136EU ES AB IR CE I10.00
59864.74MDN1'protein_coding'7111AELoss-3.9532EU AB E36_Aa41.38
60874.73TNIK'protein_coding'1756AELoss-5.799EU CE I3_AR60.00
61904.71CCR9'protein_coding'511DELoss-26.090N/ACCR9N/A
62914.70MTMR3'protein_coding'1346AELoss-7.8511EU ES IR CE Ix33.33
63944.66PPIL2'protein_coding'1658AELoss-9.092EU ER9f100.00
64954.66SLC4A7'protein_coding'2150AELoss-3.527EU ES AB I1_SR20.00
65964.66AAGAB'protein_coding'110AELoss-7.001CE I1_AR50
66974.66ITCH'protein_coding'638AELoss-7.322EU CE I2_AR40
671004.64AC069234.1'protein_coding'316AELoss-8.334CE I1_AR70
681024.63GPM6A'protein_coding'310AELoss-4.525EU ENST0000039365875.00
691034.62ATP13A3'protein_coding'1358AELoss-4.3115EU AB E12_Aa25.00
701044.62MPP1'protein_coding'1952AELoss-13.055EU AB ER14e100.00
711064.61MLL3'protein_coding'1899AELoss-4.6937EU ES AB CE E15_Da15.00
721074.61ZNF148'protein_coding'1133AELoss-7.3317EU ES AB CE I1_AR1314.29
731104.58ATM'protein_coding'568AELoss-4.3958EU CE I5_AR166.07
741124.58ANXA1'protein_coding'927DELoss-23.870N/AANXA1N/A
751134.57SSH1'protein_coding'418AELoss-5.232CE I2_AR30
761144.57QKI'protein_coding'814AELoss-4.9512EU ES AB CE I4_AR362.50
771164.56HLTF'protein_coding'1250AELoss-3.6444EU ES AB E17_Da76.32
781174.55TRNAU1AP'protein_coding'1029AELoss-12.576EU AB ER1e50.00
791184.55C10orf137'protein_coding'1143AELoss-5.1227EU AB ER26d82.61
801204.54IGHV1-24'IG_V_gene'12DELoss-23.310N/AIGHV1-24N/A
811224.52DOCK11'protein_coding'358AELoss-2.9044EU AB CE I52_AR565.85
821234.52FANCD2'protein_coding'1467AELoss-5.7319EU AB E28_Da43.75
831254.52AC096663.2'pseudogene'24AELoss-6.603EU AB E1_Da0
841274.50POLR2D'protein_coding'512AELoss-5.603EU ER1c100.00
851284.50ZNF503'protein_coding'514DELoss-22.610N/AZNF503N/A
861294.50CTDSPL2'protein_coding'215AELoss-5.2012EU CE I11_AR160.00
871304.49BRAF'protein_coding'528AELoss-6.6715IR CE I8_SR10
881324.46MAML2'protein_coding'27AELoss-5.1832EU CE I1_AR330
891334.467SK'misc_RNA'11DELoss-22.040N/A7SKN/A
901354.46PUM1'protein_coding'1449AELoss-5.8210EU ES CE I2_AR150.00
911374.45MED13'protein_coding'234AELoss-4.7628EU AB IR I3_SR10.00
921384.45ZNF367'protein_coding'15AELoss-4.298EU CE I1_AR275.00
931404.44SIK2'protein_coding'115AELoss-4.825EU CE I3_AR220.00
941414.43AFF4'protein_coding'1039AELoss-5.5025EU ES AB IR ER6c52.94
951424.43NCOA3'protein_coding'736AELoss-6.057EU ES CE I1_SR20.00
961434.42FAM13B'protein_coding'326AELoss-4.7921EU ES IR I10_AR375.00
971444.42UFD1L'protein_coding'1339AELoss-8.816EU AB ER1f100.00
981474.41SOD2'protein_coding'512AELoss-5.641EU ER1c0
991484.41R3HDM2'protein_coding'1241AELoss-5.7519EU AB IR I2_AR550.00
1001494.41KIAA1267'protein_coding'216AELoss-6.815EU CE I2_AR40
1011504.39LRBA'protein_coding'158AELoss-7.0043EU CE I2_AR564.86
1021514.39NUP98'protein_coding'1355AELoss-5.2210EU ENST0000048328522.22
1031524.38NUP205'protein_coding'1374AELoss-3.6144EU ES AB ER48e77.50
1041534.38KIAA0240'protein_coding'319AELoss-4.137EU AB IR E13_Aa33.33
1051544.38CHSY1'protein_coding'13AELoss-4.631CE I2_AR30
1061594.37ERBB2IP'protein_coding'733AELoss-3.7938EU CE I1_AR891.43
1071604.36SETD2'protein_coding'940AELoss-6.6516EU ES CE I8_SR133.33
1081614.36ZNF197'protein_coding'619AELoss-6.022EU AB E10_Da0
1091624.35ZNF397OS'protein_coding'418AELoss-5.652AB E5_Aa0
1101634.35TXNRD1'protein_coding'623AELoss-5.515EU CE I3_AR40.00
1111644.35B4GALT5'protein_coding'19AELoss-5.398EU CE I1_AR10.00
1121674.34EXOC4'protein_coding'2461AELoss-5.088EU AB CE I21_AR1166.67
1131684.34FARP1'protein_coding'839AELoss-5.8012EU AB ER20a44.44
1141704.34RNase_MRP'misc_RNA'11DELoss-20.240N/ARNase_MRPN/A
1151714.34GINS1'protein_coding'516AELoss-5.931AB E7_Aa0
1161734.33CYBRD1'protein_coding'716AELoss-5.444EU AB ER4a0
1171744.33KDM5A'protein_coding'431AELoss-3.7619EU AB I27_SR175.00
1181774.32CSTF2'protein_coding'629AELoss-6.671EU ER1b0
1191784.32RBL2'protein_coding'224AELoss-3.2517EU AB CE ER8a64.29
1201794.31PHLDB2'protein_coding'1850AELoss-6.318EU AB ER26b16.67
1211804.30AFF1'protein_coding'426AELoss-5.8515EU AB CE I2_AR1620.00
1221814.30IGKV4-1'IG_V_gene'12DELoss-19.660N/AIGKV4-1N/A
1231824.29SRPK1'protein_coding'621AELoss-5.125EU CE I5_AR266.67
1241834.29USP34'protein_coding'27142AELoss-5.1278EU ES AB CE I1_AR365.71
1251844.29TRIP10'protein_coding'1135AELoss-9.573EU AB ER1c100.00
1261854.29BMPR2'protein_coding'625AELoss-3.7819EU AB CE I6_AR380.00
1271864.29ATF7'protein_coding'515AELoss-5.178EU AB CE I2_AR10
1281884.27ANKRD28'protein_coding'1758AELoss-5.5116EU ES AB CE I11_SR250.00
1291894.27C20orf194'protein_coding'342AELoss-6.298EU AB CE I2_AR10.00
1301904.27GLS'protein_coding'1547AELoss-4.7713EU AB CE ENST0000040942837.50
1311914.26ATXN7'protein_coding'1236AELoss-5.716EU AB CE I1_AR250.00
1321944.25G0S2'protein_coding'12DELoss-19.040N/AG0S2N/A
1331954.25MACF1'protein_coding'31160AELoss-4.2161EU AB ER8a52.63
1341974.25SSBP3'protein_coding'828AELoss-5.001CE I4_AR140
1351994.25NR2C2'protein_coding'1541AELoss-4.685EU ES AB CE I5_AR20.00
1362014.24STAG1'protein_coding'849AELoss-5.0012EU ES AB CE I3_AR342.86
1372044.22ZNF589'protein_coding'1024AELoss-6.973EU AB ER6j0
1382054.22YIPF6'protein_coding'719AELoss-5.083EU AB ER1c100.00
1392084.21BAZ1B'protein_coding'324AELoss-5.231CE I1_AR30
1402094.21TRNT1'protein_coding'1233AELoss-4.909EU AB ER1d50.00
1412134.19RNF25'protein_coding'623AELoss-10.782EU ER1c100.00
1422144.19HDAC3'protein_coding'1441AELoss-7.053EU AB E1_Ac100.00
1432154.18USP15'protein_coding'427AELoss-6.027EU ES I8_SR140.00
1442164.18ECHDC2'protein_coding'2052AELoss-3.0739EU AB IR E6_Dc54.17
1452174.18FANCG'protein_coding'830AELoss-5.481EU E1a_E1e0
1462184.17HCK'protein_coding'624DELoss-18.030N/AHCKN/A
1472194.17TRIO'protein_coding'259AELoss-5.0118EU CE I34_AR550.00
1482204.17GPC4'protein_coding'19DELoss-18.000N/AGPC4N/A
1492214.17CCNL2'protein_coding'2158AELoss-12.9410EU AB ER1e57.14
1502234.17HIPK3'protein_coding'319AELoss-4.8322EU ES CE I2_AR673.68
1512254.16C3orf59'protein_coding'23DELoss-17.930N/AC3orf59N/A
1522284.16RERE'protein_coding'1650AELoss-10.4113EU ES CE I22_SR640.00
1532294.16RNF157'protein_coding'322DELoss-17.8212EU RNF15718.18
1542324.15RCOR1'protein_coding'112AELoss-3.496EU CE I2_AR50.00
1552344.15ALMS1'protein_coding'939AELoss-2.327EU ES AB E23a_E25a50.00
1562354.15SGMS1'protein_coding'619AELoss-4.021CE I4_AR40
1572364.14ZNF292'protein_coding'620AELoss-3.4113EU ES AB CE ER10a55.56
1582374.14BCL2'protein_coding'35AELoss-6.1915AB CE I1_AR30
1592404.13ANGEL2'protein_coding'819AELoss-3.746EU ES AB E6b_E6b100.00
1602414.13TBC1D20'protein_coding'519AELoss-5.672AB CE I1_AR30
1612434.12ELF2'protein_coding'616AELoss-4.802AB CE I7_AR10
1622444.12PLA2G16'protein_coding'37DELoss-17.340N/APLA2G16N/A
1632464.11PPP3CA'protein_coding'420AELoss-4.6012EU ES CE I1_SR637.50
1642474.11SNX6'protein_coding'419AELoss-5.612IR I120
1652484.10RSF1'protein_coding'521AELoss-4.905AB CE I1_AR30
1662494.10INTS6'protein_coding'2564AELoss-5.1517EU ES AB CE I6_AR445.45
1672524.09MYST4'protein_coding'630AELoss-4.595EU CE ER18c100.00
1682534.08SLC12A8'protein_coding'1955AELoss-2.2211EU AB CE E3_Da14.29
1692574.06NFE2L2'protein_coding'1333AELoss-4.873CE I6_AR10
1702604.06AL035420.2'lincRNA'12AELoss-3.191EU ER2a0
1712614.05USP33'protein_coding'1040AELoss-5.839EU ES AB CE I6_AR10.00
1722634.05MAP3K2'protein_coding'321AELoss-3.5626EU AB CE E17_Aa81.82
1732654.05VKORC1L1'protein_coding'25AELoss-4.914AB CE I1_AR20
1742664.05LRCH4'protein_coding'1348AELoss-5.954EU AB E8a_E8b0
1752694.04HIVEP1'protein_coding'826AELoss-4.796EU AB E7_Da50.00
1762704.03WHSC1L1'protein_coding'529AELoss-4.168EU AB E6_Aa20.00
1772724.03NSUN4'protein_coding'1026AELoss-4.692EU ER1d100.00
1782744.02RAD54L'protein_coding'1239AELoss-5.304EU AB E1_Ae0.00
1792764.01ABCC5'protein_coding'1659AELoss-4.758EU AB ER35c50.00
1802784.01IGLV1-36'IG_V_gene'12DELoss-16.080N/AIGLV1-36N/A
1812794.01ZNF318'protein_coding'211AELoss-3.171CE I4_AR30
1822804.01R3HDM1'protein_coding'2367AELoss-4.9327EU ES AB CE ER32c57.14
1832824.00UBR1'protein_coding'249AELoss-4.026EU AB E13_Aa25.00
1842834.00FMR1'protein_coding'1340AELoss-4.5117EU ES AB CE ENST0000037047525.00
1852843.99TTC3'protein_coding'2589AELoss-3.9371EU ES AB IR E7_Db72.88
1862853.99UEVLD'protein_coding'514AELoss-4.493EU CE ER7a0.00
1872863.99NUP50'protein_coding'2350AELoss-4.8510EU ES AB E4_Aa66.67
1882873.99KIF3A'protein_coding'1037AELoss-4.937EU AB ER22f0.00
1892883.99RASSF3'protein_coding'25AELoss-3.7711IR I1_AR160
1902893.98TET2'protein_coding'515AELoss-3.389EU AB IR I6_SR10.00
1912903.98ZNFX1'protein_coding'828AELoss-4.704EU AB E13_Aa0.00
1922923.98THADA'protein_coding'2484AELoss-5.4426EU AB CE I47_AR866.67
1932933.98DST'protein_coding'18137AELoss-3.9185EU ES AB IR ER109b70.51
1942953.97STIL'protein_coding'1236AELoss-4.136EU AB E8_Aa0.00
1952963.97ARHGAP18'protein_coding'419AELoss-3.858EU CE I1_AR883.33
1962993.96KIAA1310'protein_coding'2465AELoss-4.674EU ES AB E13_Aa0.00
1973003.96XPO4'protein_coding'534AELoss-4.5919EU CE I8_AR252.94
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