Summary page for 'GRM8' (ENSG00000179603) - Project: MDS


| Show/Hide All Content


Basic Gene Stats

Species: Human
Gene Name: 'GRM8' (HUGO: GRM8)
ALEXA Gene ID: 15027 (ALEXA_hs_60_37e)
EnsEMBL Gene ID: ENSG00000179603
Entrez Gene Record(s): GRM8
Ensembl Gene Record: ENSG00000179603
Evidence: Known Gene
Gene Type: protein_coding
Location: chr7 126078652-126893348 (-): 7q31.3-q32.1
Size (bp): 814697
Description: glutamate receptor, metabotropic 8 [Source:HGNC Symbol;Acc:4600]



Data links for each library (displays expression data in UCSC Genome Browser)

Comparison: HS3018_vs_HS3017
MDS019_T2 (HS3017) has 0 total reads for 'GRM8'. UCSC data links: (C | P)
MDS019_T3 (HS3018) has 0 total reads for 'GRM8'. UCSC data links: (C | P)

Comparison: HS3018_vs_HS3016
MDS019_T1 (HS3016) has 0 total reads for 'GRM8'. UCSC data links: (C | P)
MDS019_T3 (HS3018) has 0 total reads for 'GRM8'. UCSC data links: (C | P)

Comparison: HS3017_vs_HS3016
MDS019_T1 (HS3016) has 0 total reads for 'GRM8'. UCSC data links: (C | P)
MDS019_T2 (HS3017) has 0 total reads for 'GRM8'. UCSC data links: (C | P)



Link to other genes in the same chromosome region as 'GRM8'

chr7_5



Features defined for this gene: 699

Gene: 1
Transcript: 16
ExonRegion: 48
Junction: 460
    KnownJunction: 31
    NovelJunction: 429
Boundary: 69
    KnownBoundary: 15
    NovelBoundary: 54
Intron: 35
ActiveIntronRegion: 17
SilentIntronRegion: 50
Intergenic: 2
SilentIntergenicRegion: 2



Summary of transcript specific features for 'GRM8' (ENSG00000179603)

ENST00000435661:NA
ENST00000495315:NA
ENST00000480995:ER7a, E7a_E9a, E10a_E16a
ENST00000358373:ER2a, E2a_E5a
ENST00000339582:ER1a, ER27g
ENST00000448250:ER6a, E6a_E9a
ENST00000472701:E25c_E26a, ER26a, E26a_E27a
ENST00000465800:ER11a, E11a_E12a, E12b_E13a, ER12b, ER13a, E13a_E14a, ER14a
ENST00000412160:ER4a, E4a_E5a
ENST00000489939:ER23a, E23a_E24a
ENST00000473254:E7a_E8a, ER8a, E8a_E9a, E10a_E12a
ENST00000444921:NA
ENST00000341617:NA
ENST00000405249:NA
ENST00000465844:E9a_E15a, ER15a
ENST00000457830:ER3a, E3a_E5a


Summary of known expressed features

Expressed above background

LibraryExon Regions
(Expressed/Total)
Known Junctions
(Expressed/Total)
MDS019_T1:0/480/31
MDS019_T2:0/480/31
MDS019_T3:0/480/31

Detected at any level above 0

LibraryExon Regions
(Detected/Total)
Known Junctions
(Detected/Total)
MDS019_T1:0/480/31
MDS019_T2:0/480/31
MDS019_T3:0/480/31


Normalized expression data for each known or novel expressed feature of 'GRM8'

The following table summarizes the expression values of all known features of the gene 'GRM8' in each library. Known features (i.e. those that correspond to one or more EnsEMBL transcripts) are included regardless of their expression level. Novel features are only reported in this table if they are expressed above the level of intergenic background noise. The 'FID' column reports the unique Feature ID for the gene, transcript, exon region, exon junction, etc. The 'Name' column reports the Feature Name for the feature (e.g. E5a_E6a is the name of an exon junction corresponding to the connection of exons 5 and 6). The 'Type' column reports the type of the feature and may be one of the following: Gene, Transcript, Exon Region, Known Junction, Novel Junction, Known Boundary, Novel Boundary, Silent or Active Intronic Regions, and Silent or Active Intergenic Regions (see our manuscript for more details). The 'Base Count' column reports the number of nucleotide bases for the feature followed by the percent of these that do NOT correspond to repeats and the percent that are known to be protein coding in one or more EnsEMBL transcripts. The 'Supporting ESTs/mRNAs' column reports the number of ESTs and mRNAs that when aligned to the human genome support the expression of a feature (i.e. the sequence alignment coordinates match an exon junction or boundaries of an exon, retained intron, etc.). The 'Conserved Species' column reports the number of 'other' species for which there was at least 1 supporting EST/mRNA alignment. Finally, the remaining columns report the log2 expression value for each feature in each library. Bold values indicate expression above background. Each expression value is also a hyperlink to a view of the feature's corresponding genomic region in the UCSC genome browser. Expression data will automatically be loaded as custom GFF and wiggle tracks.


FIDNameTypeBase Count
(% unmasked |
% coding)
Supporting
Human
ESTs/mRNAs
Conserved
Species
MDS019_T1 Log2
Expression
MDS019_T2 Log2
Expression
MDS019_T3 Log2
Expression
G15027GRM8Gene6183 (95% | 48%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90322ENST00000339582Transcript219 (100% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90333ENST00000472701Transcript342 (100% | 17%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90324ENST00000358373Transcript315 (100% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90330ENST00000457830Transcript117 (100% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90326ENST00000412160Transcript240 (100% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90323ENST00000341617TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)
T90325ENST00000405249TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)
T90327ENST00000435661TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)
T90328ENST00000444921TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)
T90329ENST00000448250Transcript114 (100% | 27%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90335ENST00000480995Transcript159 (58% | 39%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90334ENST00000473254Transcript332 (91% | 9%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90332ENST00000465844Transcript334 (91% | 54%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90331ENST00000465800Transcript572 (100% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90336ENST00000489939Transcript131 (24% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)
T90337ENST00000495315TranscriptN/A (N/A% | N/A%)N/AN/ANA (C | P)NA (C | P)NA (C | P)
ER412990ER1aExonRegion202 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463700E1_AbKnownBoundary62 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412991ER1bExonRegion296 (91% | 0%)300.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2831865E1a_E5aKnownJunction62 (100% | 0%)700.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412992ER2aExonRegion253 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2831895E2a_E5aKnownJunction62 (100% | 0%)500.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412993ER3aExonRegion55 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2831924E3a_E5aKnownJunction62 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412994ER4aExonRegion178 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2831952E4a_E5aKnownJunction62 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412995ER5aExonRegion297 (100% | 0%)1000.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463710E5_AbKnownBoundary62 (100% | 26%)1020.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463711E5_AcKnownBoundary62 (100% | 50%)1020.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412996ER5bExonRegion15 (100% | 7%)1820.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412997ER5cExonRegion61 (100% | 100%)1920.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463708E5_DaKnownBoundary62 (100% | 100%)1820.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412998ER5dExonRegion448 (100% | 100%)1420.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832009E5b_E9aKnownJunction62 (100% | 100%)1500.00 (C | P)0.00 (C | P)0.00 (C | P)
ER412999ER6aExonRegion52 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832033E6a_E9aKnownJunction62 (100% | 50%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413000ER7aExonRegion35 (0% | 0%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463716E7_AbKnownBoundary62 (0% | 0%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413001ER7bExonRegion117 (0% | 0%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832054E7a_E8aKnownJunction62 (50% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832055E7a_E9aKnownJunction62 (50% | 50%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413002ER8aExonRegion146 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832076E8a_E9aKnownJunction62 (100% | 50%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413003ER9aExonRegion61 (100% | 100%)1760.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463721E9_AbKnownBoundary62 (100% | 100%)1760.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413004ER9bExonRegion156 (100% | 100%)1460.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832097E9a_E10aKnownJunction62 (100% | 50%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832102E9a_E15aKnownJunction62 (100% | 100%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832103E9a_E16aKnownJunction62 (100% | 100%)1200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413005ER10aExonRegion75 (100% | 0%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832117E10a_E12aKnownJunction62 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832121E10a_E16aKnownJunction62 (100% | 50%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413006ER11aExonRegion146 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832134E11a_E12aKnownJunction62 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413007ER12aExonRegion91 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832167E12b_E13aKnownJunction62 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413008ER12bExonRegion14 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413009ER13aExonRegion99 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832183E13a_E14aKnownJunction62 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413010ER14aExonRegion127 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413011ER15aExonRegion272 (89% | 44%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413012ER16aExonRegion136 (100% | 100%)1360.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832225E16a_E17aKnownJunction62 (100% | 100%)1300.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413013ER17aExonRegion18 (100% | 100%)1360.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413014ER17bExonRegion137 (100% | 100%)1350.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832237E17b_E18aKnownJunction62 (100% | 100%)1300.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413015ER18aExonRegion138 (100% | 100%)1360.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832248E18a_E19aKnownJunction62 (100% | 100%)1300.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413016ER19aExonRegion145 (100% | 100%)1370.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463743E19_DaKnownBoundary62 (100% | 100%)1360.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413017ER19bExonRegion56 (100% | 100%)1370.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832267E19b_E20aKnownJunction62 (100% | 100%)300.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832268E19b_E21aKnownJunction62 (100% | 100%)1000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413018ER20aExonRegion71 (100% | 100%)300.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832276E20a_E21aKnownJunction62 (100% | 100%)200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413019ER21aExonRegion5 (100% | 100%)1210.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413020ER21bExonRegion73 (100% | 100%)1280.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463747E21_DbKnownBoundary62 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413021ER21cExonRegion59 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832291E21c_E22aKnownJunction62 (100% | 100%)1200.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413022ER22aExonRegion110 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463751E22_AbKnownBoundary62 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413023ER22bExonRegion727 (100% | 100%)1340.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463752E22_DaKnownBoundary62 (100% | 100%)1250.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413024ER22cExonRegion99 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832305E22b_E25aKnownJunction62 (100% | 100%)1100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413025ER23aExonRegion69 (0% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832308E23a_E24aKnownJunction62 (50% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413026ER24aExonRegion53 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832312E24a_E25aKnownJunction62 (100% | 50%)000.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413027ER25aExonRegion247 (100% | 100%)1260.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463760E25_DaKnownBoundary62 (100% | 100%)640.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832316E25a_E27aKnownJunction62 (100% | 100%)600.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413028ER25bExonRegion50 (100% | 100%)450.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832319E25c_E26aKnownJunction62 (100% | 42%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832320E25c_E27aKnownJunction62 (100% | 92%)300.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413029ER25cExonRegion5 (100% | 0%)400.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413030ER26aExonRegion218 (100% | 0%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
EJ2832321E26a_E27aKnownJunction62 (100% | 50%)100.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413031ER27aExonRegion50 (100% | 100%)750.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463766E27_DaKnownBoundary62 (100% | 50%)730.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413032ER27bExonRegion42 (100% | 0%)940.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463765E27_DbKnownBoundary62 (100% | 0%)840.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413033ER27cExonRegion384 (98% | 0%)300.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463764E27_DcKnownBoundary62 (100% | 0%)520.00 (C | P)0.00 (C | P)0.00 (C | P)
EB463767E27_DdKnownBoundary62 (100% | 0%)520.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413034ER27dExonRegion1 (100% | 0%)730.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413035ER27eExonRegion64 (100% | 0%)500.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413036ER27fExonRegion13 (100% | 0%)500.00 (C | P)0.00 (C | P)0.00 (C | P)
ER413037ER27gExonRegion17 (100% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)


DE and AE features of 'GRM8'

The following table displays the log2 difference and splicing index (SI) values at the level of the gene and for each known transcript. Following these values are the log2 difference and SI values for each individual sequence feature (exon, junction, etc.) that was found to be significantly differentially or alternatively expressed. Features that did not pass the significance threshhold are not displayed. For more details on each feature, including absolute expression levels in each library, refer to the expression table above. To visualize the differences in expression refer to the figures below.


FIDNameTypeMDS019_T3_vs_MDS019_T2
(Log2 Diff | SI Value)
MDS019_T3_vs_MDS019_T1
(Log2 Diff | SI Value)
MDS019_T2_vs_MDS019_T1
(Log2 Diff | SI Value)


Insufficient data to create figures