Summary page for comparison: 'MDS019_T3_vs_MDS019_T2' (HS3018_vs_HS3017) - Project: MDS


Download complete candidate list as tab delimited text file: MDS019_T3_vs_MDS019_T2.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 10,483 (of 50,727 possible genes)

DE Genes: 4,529

AE Genes: 7,793

Alternative Exon Usage (EU) Genes: 6,025

Alernative Exon Skipping (ES) Genes: 2,694

Alternative Exon Boundary (AB) Genes: 5,069

Intron Retention (IR) Genes: 599

Cryptic Exon (CE) Genes: 822


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1112.67CTSG'protein_coding'15DELoss-6504.700N/ACTSGN/A
2211.80LMO4'protein_coding'411AELoss-374.1611EU AB IR E2_Da100.00
3311.28SAMSN1'protein_coding'618AELoss-71.021ES E7b_E9a0
4411.11GNL3'protein_coding'1437AELoss-161.5515EU ES AB E2d_E3a60.00
5511.09MAPK8IP3'protein_coding'234AEGain75.055EU AB CE I1_AR30
6610.58ISCA1'protein_coding'512AELoss-45.944EU ES AB E5_Da100.00
7710.50IGHV5-78'IG_V_pseudogene'11DELoss-1446.380N/AIGHV5-78N/A
8810.48NLRC5'protein_coding'452AEGain34.9116EU ES AB IR CE E18_Aa66.67
9910.19CNOT8'protein_coding'2560AELoss-42.0211EU AB E3_Ab60.00
101010.08HBB'protein_coding'411DELoss-1083.640N/AHBBN/A
111110.05MLLT3'protein_coding'1028AELoss-27.5711EU ES AB E8a_E10a100.00
121210.03NET1'protein_coding'722AELoss-47.521AB E12_Aa0
13139.98HHLA2'protein_coding'1029AELoss-13.2116EU ES AB E1_Da58.33
14149.87ANTXR2'protein_coding'1142AELoss-73.8411EU ES AB E6a_E9a28.57
15159.65TIAL1'protein_coding'1445AELoss-81.8713EU AB E14_Dd62.50
16169.64HLA-DPB1'protein_coding'1022AELoss-53.061EU E2a_E2d0
17179.58C4orf43'protein_coding'921AELoss-20.905EU AB E2_Da50.00
18189.54CD46'protein_coding'2736AELoss-111.7113EU AB E5_Ad57.14
19199.47FAM69B'protein_coding'26AELoss-34.632AB IR E2_Aa0
20209.46LSM5'protein_coding'1021AELoss-28.023EU ES AB E1_Da100.00
21219.45MTCH2'protein_coding'113AELoss-57.523EU ES AB E9_Da0.00
22229.37YY1'protein_coding'15AELoss-64.031AB E4_Aa0
23239.35CLDND1'protein_coding'3568AELoss-43.584EU AB E4_Db0
24249.28CD36'protein_coding'2050AELoss-18.057EU AB E17_Aa0.00
25259.27PFKL'protein_coding'1243AELoss-65.002EU AB ER13d0
26269.16PARP9'protein_coding'824AELoss-48.9710EU AB E4_Db25.00
27279.15DCTN4'protein_coding'1541AELoss-34.616EU ES AB E8_Aa33.33
28289.13POLR2H'protein_coding'1433AELoss-47.3710EU ES AB E4_Ac20.00
29299.10CACNA2D2'protein_coding'1053AELoss-34.4020EU ES AB E37_Da56.25
30309.09STK38'protein_coding'217AELoss-74.714EU AB E10_Aa100.00
31319.03ARFGAP2'protein_coding'522AELoss-157.503AB CE E12_Aa0
32328.87RP11-439E19.3'processed_transcript'515AELoss-28.0816EU AB IR E1b_E2a33.33
33338.87PHF11'protein_coding'1944AELoss-59.8720EU ES AB IR E8_Aa44.44
34348.84PTPRC'protein_coding'1854AELoss-142.636EU ES E4a_E9a60.00
35358.84TSNAX'protein_coding'616AELoss-47.312EU AB E3_Ab0
36368.82TGOLN2'protein_coding'615AELoss-152.717EU AB CE E4_Ac0.00
37378.80XPO1'protein_coding'2678AELoss-53.4217EU ES AB E8d_E8e30.00
38388.79STAT5B'protein_coding'730AELoss-55.354EU ES AB E10_Ac0.00
39398.73PTMA'protein_coding'1439AELoss-66.579EU ES AB ENST0000041006440.00
40408.70ARPC5L'protein_coding'310AELoss-34.9312EU AB IR CE E3_Da0
41418.67UHRF2'protein_coding'1342AELoss-78.1117EU ES AB E15_Ab66.67
42428.65HBA1'protein_coding'48DELoss-401.610N/AHBA1N/A
43438.63LILRB4'protein_coding'1339AELoss-19.764EU AB E14_Ac100.00
44448.62DPYD'protein_coding'735AELoss-38.102ES AB E3_Da0
45458.62TTF2'protein_coding'841AELoss-46.057EU ES AB E14_Aa0.00
46468.61FUBP1'protein_coding'1746AELoss-47.328EU AB IR ER20c0.00
47478.60SFRS6'protein_coding'39AELoss-29.715EU AB E2a_E3a66.67
48488.60NIT2'protein_coding'723AELoss-26.376EU AB E5_Ab0.00
49498.53MARCH6'protein_coding'1454AELoss-84.128EU AB E14_Ab75.00
50508.52HMGN1'protein_coding'2146AELoss-41.9919EU AB ER4k53.33
51518.49STAT3'protein_coding'942AELoss-48.691AB E20_Ad0
52528.46ILF2'protein_coding'420AELoss-44.211ES E9a_E11a0
53538.45TEX261'protein_coding'821AELoss-49.102EU ER5c0.00
54548.44RP11-1280I22.1'protein_coding'1122AELoss-1020.2622EU AB E1_Da76.47
55558.43THOC2'protein_coding'2387AELoss-46.5011EU ES AB ER31f42.86
56568.42C19orf61'protein_coding'114AELoss-43.441AB E9_Da0
57578.40IDH3B'protein_coding'1441AELoss-70.453EU AB E6_Ab100.00
58588.34TMEM41A'protein_coding'720AELoss-35.5811EU ES AB E7_Aa0.00
59598.33SFRS11'protein_coding'2052AELoss-67.1440EU ES AB IR E5_Af73.68
60608.32AP2A2'protein_coding'635AELoss-27.421AB E18_Aa0
61618.31PITPNB'protein_coding'1337AELoss-35.044EU ES AB E4a_E7c0.00
62628.31WDR6'protein_coding'2149AELoss-172.449EU AB E6_Dp25.00
63638.30PHPT1'protein_coding'718AELoss-41.652EU AB E3_Da0
64648.28CD47'protein_coding'722AELoss-33.1715EU AB IR E8_Aa50.00
65658.27SATB1'protein_coding'1949AEGain29.417EU ES AB E15_Aa0.00
66668.26HBA2'protein_coding'48DELoss-305.760N/AHBA2N/A
67678.23C17orf85'protein_coding'315AELoss-47.527EU ES AB IR E8_Da75.00
68688.19NUP188'protein_coding'1369AELoss-40.452EU AB E25_Aa0
69698.16CTAGE5'protein_coding'736AELoss-152.606EU ES ENST0000034174940.00
70708.16AJ006998.2'processed_transcript'17DELoss-285.770N/AAJ006998.2N/A
71718.15CPEB3'protein_coding'314AELoss-180.715EU AB E3_Aa0.00
72728.14DDX17'protein_coding'1640AELoss-150.4918EU ES AB ER14c63.64
73738.14KAT2A'protein_coding'221AELoss-58.923EU AB E6b_E7a100.00
74748.11DGKA'protein_coding'731AELoss-40.614EU ES AB E15_Aa0.00
75758.11C15orf29'protein_coding'110AELoss-27.812AB E8_Da0
76768.09COPS5'protein_coding'1340AELoss-33.2712EU ES AB E11_Da22.22
77778.06DDX3X'protein_coding'629AELoss-39.193ES E16a_E19a0.00
78788.03HOXA7'protein_coding'37DELoss-262.280N/AHOXA7N/A
79798.03TADA3'protein_coding'621AELoss-23.051CE I5_AR10
80808.03NOL11'protein_coding'118AELoss-34.034EU ES AB E9a_E11a0.00
81818.01HOXA9'protein_coding'925DELoss-258.580N/AHOXA9N/A
82828.01AC009113.2'protein_coding'110DELoss-257.200N/AAC009113.2N/A
83838.00KIAA1967'protein_coding'1447AELoss-40.298EU ES AB E13_Aa0.00
84848.00SRP54'protein_coding'116AELoss-89.972ES AB E14_Aa0
85857.96MINA'protein_coding'1132AELoss-29.4910EU AB CE ER7a60.00
86867.95FAF2'protein_coding'623AELoss-33.472AB E6_Db0
87877.94KIAA0406'protein_coding'618AELoss-38.824EU ES AB E5_Aa50.00
88887.93GBP5'protein_coding'723AELoss-14.096EU AB E1_Af100.00
89897.92AZU1'protein_coding'27DELoss-242.220N/AAZU1N/A
90907.91CLC'protein_coding'14DELoss-240.840N/ACLCN/A
91917.91TMEM165'protein_coding'1128AELoss-99.2926EU AB IR CE E8_Ad37.50
92927.87EPX'protein_coding'113DELoss-234.380N/AEPXN/A
93937.86RP11-439E19.8'protein_coding'214AELoss-7.849EU ES AB E7_Da33.33
94947.85ITGA4'protein_coding'1250AELoss-59.686EU ES E13a_E15c60.00
95957.83GPM6B'protein_coding'1128AELoss-24.906EU ES AB ER14b0.00
96967.83NGFRAP1'protein_coding'511DELoss-226.860N/ANGFRAP1N/A
97977.82B4GALT6'protein_coding'311AELoss-27.521AB E3_Aa0
98987.81NBN'protein_coding'1138AELoss-27.871AB E5_Da0
99997.80IGHV3-43'IG_V_gene'12AELoss-21.471EU ER1a0
1001007.80LPAR5'protein_coding'35AELoss-50.262EU ES E1a_E3a100.00
1011017.79PDE4DIP'protein_coding'29100AEGain16.5756EU ES AB E8a_E9f53.19
1021027.78KCNN4'protein_coding'211AELoss-31.553EU AB E1_Da0
1031037.78AC068580.3'protein_coding'49AELoss-34.0010EU AB IR CE E1_Da33.33
1041047.77DNAJB6'protein_coding'2257AELoss-25.0616EU ES AB CE E10a_E10c20.00
1051057.76PRTN3'protein_coding'15DELoss-217.311EU PRTN30
1061067.75ZNF259'protein_coding'827AELoss-30.843EU AB E7_Aa0
1071077.75PABPC1'protein_coding'2468AELoss-20.914EU AB ENST00000517921100.00
1081087.75AC004410.1'protein_coding'427AELoss-93.815EU AB E11_Dc100.00
1091097.74MLF1IP'protein_coding'623AELoss-22.482ES AB E13_Aa0
1101107.72HK1'protein_coding'2460AELoss-133.218EU ES AB E10_Ab75.00
1111117.71ADPGK'protein_coding'514AELoss-76.133ES AB E5_Aa0.00
1121127.70RMND5A'protein_coding'415AELoss-20.581AB E7_Aa0
1131137.67CREB1'protein_coding'1743AELoss-28.057EU ES AB E1_Dc0.00
1141147.66PSME4'protein_coding'1269AELoss-30.154EU AB E43_Aa0
1151157.66MAT2A'protein_coding'1029AELoss-26.4523EU ES AB E3b_E3e18.18
1161167.65PPTC7'protein_coding'16AELoss-26.912AB E4_Da0
1171177.64RDH11'protein_coding'29AELoss-84.341AB E2_Da0
1181187.62UBA7'protein_coding'1143AELoss-128.6520EU ES AB E8_Dc25.00
1191197.62UBE2J2'protein_coding'2249AELoss-31.669EU ES AB E7_Db25.00
1201207.61EEF1D'protein_coding'916AELoss-25.154EU ES E4a_E5b33.33
1211217.61C17orf28'protein_coding'323DELoss-195.810N/AC17orf28N/A
1221227.60ADRM1'protein_coding'620AELoss-14.045EU ES AB IR E2a_E5a0.00
1231237.60SSBP1'protein_coding'1433AELoss-22.316EU CE E1d_E2a0.00
1241247.59THRAP3'protein_coding'522AELoss-25.951ES E3a_E5a0
1251257.57SFXN3'protein_coding'927AELoss-63.7910EU AB ER9d40.00
1261267.56MED12L'protein_coding'958AELoss-14.2031EU AB E6a_E7a52.17
1271277.56UNC45A'protein_coding'1244AELoss-83.665EU AB E7a_E7b33.33
1281287.55GGA2'protein_coding'117AELoss-31.062AB E3_Da0
1291297.54RIOK3'protein_coding'316AELoss-28.853EU AB E11_Aa0.00
1301307.53AC107016.2'protein_coding'29DELoss-185.380N/AAC107016.2N/A
1311317.53APIP'protein_coding'310AELoss-13.972EU ES ER2a100.00
1321327.53SFT2D1'protein_coding'619AELoss-31.535EU AB CE E6_Da0.00
1331337.52TBC1D10B'protein_coding'824AELoss-31.762EU AB E2_Aa0
1341347.52SRPK2'protein_coding'1857AEGain21.9921EU ES AB IR CE E26_Aa54.55
1351357.51SERPINB9'protein_coding'17AELoss-23.362EU AB E4_Da0
1361367.50LPAR6'protein_coding'923AEGain20.385EU ES E4a_E5a25.00
1371377.49LOXL3'protein_coding'1032AELoss-16.955EU ES AB E3_Aa0.00
1381387.48NT5C3'protein_coding'1231AELoss-31.0510EU ES AB E2a_E3a71.43
1391397.46ECD'protein_coding'724AELoss-24.945EU AB E6_Aa0.00
1401407.46TOP3A'protein_coding'835AELoss-31.298EU AB E5_Aa33.33
1411417.45CDC7'protein_coding'721AELoss-17.227EU AB E1_Da100.00
1421427.44HSPG2'protein_coding'19132AEGain10.8126EU AB E78_Aa22.22
1431437.44SULT1A1'protein_coding'718AELoss-31.2618EU ES AB E2_Da84.62
1441447.44PPP3CB'protein_coding'826AELoss-21.372EU AB E13_Aa0
1451457.43ACSL4'protein_coding'1240AELoss-28.637EU ES AB E5_Ab33.33
1461467.42TSPAN32'protein_coding'2042AEGain9.1727EU AB E10i_E11c52.94
1471477.41DTYMK'protein_coding'822AELoss-19.238EU AB E7_Da0.00
1481487.40RNASET2'protein_coding'1650AELoss-63.7224EU ES AB ER12c50.00
1491497.39TBRG1'protein_coding'720AELoss-54.1815EU ES AB IR E5_Da25.00
1501507.38TAPT1'protein_coding'1962AELoss-64.6317EU ES AB E18_Aa30.00
1511517.37LMAN1'protein_coding'113AELoss-91.592EU CE I5_AR40
1521527.36HBG1'protein_coding'37DELoss-164.290N/AHBG1N/A
1531537.35ZNF273'protein_coding'721AELoss-85.477EU ES AB E6_Aa50.00
1541547.35KIAA1147'protein_coding'212AELoss-26.783AB E10_Aa0
1551557.35MYO1F'protein_coding'335AELoss-72.761AB E8_Da0
1561567.35GLMN'protein_coding'627AELoss-18.486EU AB CE E17_Aa0.00
1571577.33ACSS1'protein_coding'519AELoss-29.114ES AB E13_Aa0.00
1581587.31CELF2'protein_coding'1026AELoss-18.522ES AB E15a_E16b0
1591597.31AP1G1'protein_coding'634AELoss-27.1311EU ES AB E19_Aa20.00
1601607.31SLC30A5'protein_coding'1035AELoss-16.185EU AB E9_Da100.00
1611617.31C7orf50'protein_coding'920AEGain28.799EU AB IR E3_Da50.00
1621627.30KIF9'protein_coding'1549AEGain18.0618EU ES AB IR E7_Aa45.45
1631637.30MDM4'protein_coding'1256AEGain5.4115EU ES AB E17a_E18a36.36
1641647.29FAM116B'protein_coding'734AELoss-16.207EU AB ER6d20.00
1651657.29NR3C1'protein_coding'1939AELoss-18.106EU ES AB E18_Da0.00
1661667.29ATP6AP1'protein_coding'1130AELoss-27.383EU AB E1_Db0.00
1671677.27ENOSF1'protein_coding'422AEGain19.2927EU ES AB IR I15_SR145.45
1681687.27CD9'protein_coding'616DELoss-56.446EU ES AB CD933.33
1691697.27AK3'protein_coding'616AELoss-67.096EU AB ER5a0.00
1701707.25LRCH3'protein_coding'1958AELoss-92.9811EU ES AB E22_Aa20.00
1711717.25EXOC3'protein_coding'1139AELoss-47.1931EU ES AB IR E9_Ab72.22
1721727.25AC135983.5'protein_coding'16AEGain19.281AB E2_Aa0
1731737.24RP11-397P14.3'pseudogene'215AEGain8.346EU ES AB E8a_E10a75.00
1741747.24EIF4G3'protein_coding'1663AELoss-23.952ES E12a_E15b0.00
1751757.24EIF5'protein_coding'213AELoss-63.3210ES AB IR CE E6_Aa0
1761767.22IVNS1ABP'protein_coding'1031AELoss-30.908EU AB E10_Aa75.00
1771777.21COMMD3'protein_coding'2040AELoss-38.777EU AB ER4m50.00
1781787.21COX17'protein_coding'718AELoss-17.404EU ES AB E6_Da0.00
1791797.21ARHGAP30'protein_coding'1036AEGain20.073EU ES E6a_E7b50.00
1801807.21LIMS1'protein_coding'1534AELoss-13.977EU ES AB ENST0000047403820.00
1811817.20RPL23A'protein_coding'718AEGain20.922EU ES ENST000003557310.00
1821827.20HGSNAT'protein_coding'1343AELoss-30.1312EU AB IR ENST0000052067866.67
1831837.20SIVA1'protein_coding'24AELoss-22.501AB E3_Da0
1841847.19VPRBP'protein_coding'536AELoss-25.037EU ES IR E3a_E5a25.00
1851857.19FAM104A'protein_coding'37AELoss-14.313EU ES AB E1a_E4a100.00
1861867.18RUFY1'protein_coding'1651AELoss-21.7513EU AB E18_Aa42.86
1871877.17RIPK1'protein_coding'519AELoss-29.954EU AB E6_Da0.00
1881887.17HS2ST1'protein_coding'1131AELoss-18.6618EU ES AB ER11b50.00
1891897.16ARID5A'protein_coding'820AELoss-25.423EU AB E2_Da0
1901907.16TRABD'protein_coding'622AELoss-66.777EU E2a_E3b33.33
1911917.16CALCOCO1'protein_coding'622AELoss-123.061AB E13_Da0
1921927.16WHAMML2'lincRNA'318AELoss-47.1316EU ES AB CE E1c_E2a66.67
1931937.15ORC3L'protein_coding'630AELoss-23.693ES AB E16_Da0
1941947.15SHMT1'protein_coding'726AELoss-14.454EU ES AB E14_Da100.00
1951957.15MIER3'protein_coding'1235AELoss-23.394EU E8b_E9a33.33
1961967.13POLE'protein_coding'556AELoss-65.355EU AB E16_Da0.00
1971977.13RARS'protein_coding'935AELoss-18.599EU AB IR I650.00
1981987.13MTERFD1'protein_coding'518AELoss-22.183EU AB CE E2_Aa0
1991997.13VPS52'protein_coding'1344AELoss-58.639EU AB E15_Aa33.33
2002007.13YIPF3'protein_coding'2055AELoss-24.504EU ER3b33.33
2012017.13RNF123'protein_coding'1475AELoss-80.8512EU AB E32_Db33.33
2022027.13MLH1'protein_coding'2768AELoss-16.548EU ES AB E1_Al60.00
2032037.12OTUD6B'protein_coding'413AELoss-24.818EU ES AB E2_Da50.00
2042047.11CDC16'protein_coding'1237AELoss-72.8714EU ES AB IR E9_Aa40.00
2052057.11RP11-347C12.1'protein_coding'316AEGain8.594EU CE I1_SR100
2062067.10TRPT1'protein_coding'311AELoss-20.614AB IR E5_Da0
2072077.09LIN52'protein_coding'16AELoss-21.731AB E1_Da0
2082087.08DECR1'protein_coding'1950AELoss-24.636EU ES AB E2_Aa25.00
2092097.07SIRT2'protein_coding'2055AELoss-31.2113EU AB IR E2_Ac75.00
2102107.07ARV1'protein_coding'716AELoss-15.418EU ES AB ER1c50.00
2112117.07RAB34'protein_coding'2256AELoss-21.375EU ES AB E6f_E6d0.00
2122127.06PMPCA'protein_coding'621AELoss-30.835EU AB ER6d100.00
2132137.05NCBP1'protein_coding'530AELoss-17.893ES AB E9b_E11a0
2142147.04STX7'protein_coding'622AELoss-15.391AB E4_Db0
2152157.04UTP18'protein_coding'831AELoss-15.481AB E8_Da0
2162167.03WRN'protein_coding'339AELoss-22.5310EU AB CE E20_Da0.00
2172177.02INTS3'protein_coding'1250AELoss-156.988EU AB E20_Aa20.00
2182187.02ST3GAL6'protein_coding'2867AELoss-24.7427EU ES AB CE E11_Da21.43
2192197.00ADRBK1'protein_coding'222AELoss-24.241EU E12a_E13a0
2202206.99DCTN6'protein_coding'617AELoss-17.582EU AB E5_Da0
2212216.99AC006427.1'lincRNA'13AEGain15.336AB CE I1_AR40
2222226.98SCAPER'protein_coding'235AEGain23.5215EU E24a_E25a42.86
2232236.98CDK8'protein_coding'520AELoss-23.102EU AB E10_Ab0
2242246.97SUGP1'protein_coding'216AELoss-61.116EU ES E2a_E4a40.00
2252256.95CCDC99'protein_coding'1854AELoss-14.323EU AB E3_Da0
2262266.95AC058791.2'processed_transcript'823AEGain15.1115EU ES AB CE I6_AR250.00
2272276.94PRDM15'protein_coding'1756AEGain15.4916EU ES AB E32_Df33.33
2282286.94FAM78A'protein_coding'49AELoss-19.984ES AB E2_Db0
2292296.93MATR3'protein_coding'48110AELoss-15.3225EU ES AB E6a_E15b68.42
2302306.93RALGAPA2'protein_coding'1154AEGain22.008EU AB CE I33_AR50.00
2312316.93TOP2A'protein_coding'557AELoss-19.533EU ES AB E23a_E25a0.00
2322326.93STK25'protein_coding'3379AELoss-65.4713EU ES AB E8_De42.86
2332336.93COPG2'protein_coding'416AELoss-24.036EU AB E11_Aa0.00
2342346.92SUZ12'protein_coding'421AELoss-14.073EU AB E8a_E9b0.00
2352356.92TBCB'protein_coding'411AELoss-20.691AB E2_Da0
2362366.92AOAH'protein_coding'1039AELoss-14.613EU AB E1_Ab0.00
2372376.92ZNF691'protein_coding'1019AELoss-43.9810EU AB ER2b71.43
2382386.91HLA-H'pseudogene'29AELoss-18.925EU AB IR E2_Aa0
2392396.90ZFAND2B'protein_coding'2048AELoss-107.0523EU AB E5_Da18.18
2402406.89LSS'protein_coding'1138AELoss-107.897EU AB IR E20_Aa0
2412416.89HBG2'protein_coding'718DELoss-118.810N/AHBG2N/A
2422426.89MYLK'protein_coding'2265AELoss-56.0310EU AB ENST0000050824025.00
2432436.89GSPT1'protein_coding'419AELoss-15.021ES E7a_E9a0
2442446.89PKMYT1'protein_coding'518AELoss-23.503AB IR E4_Aa0
2452456.88RP11-262H14.1'processed_transcript'310AEGain10.7120EU ES AB IR ER4a50.00
2462466.88FUS'protein_coding'1135AELoss-56.623EU ES AB E4_Da0.00
2472476.88TMEM106A'protein_coding'19AEGain12.935ES AB CE I4_SR10
2482486.87SLC2A5'protein_coding'1236AELoss-67.167EU ES AB E12_Dc75.00
2492496.87CSF3R'protein_coding'2042AELoss-66.523EU AB E3_Da0
2502506.87ZMIZ2'protein_coding'1646AELoss-130.4719EU AB IR E6_Da28.57
2512516.86NAB1'protein_coding'1133AELoss-19.9516EU ES AB E4_Da37.50


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1211.80LMO4'protein_coding'411AELoss-374.1611EU AB IR E2_Da100.00
2311.28SAMSN1'protein_coding'618AELoss-71.021ES E7b_E9a0
3411.11GNL3'protein_coding'1437AELoss-161.5515EU ES AB E2d_E3a60.00
4511.09MAPK8IP3'protein_coding'234AEGain75.055EU AB CE I1_AR30
5610.58ISCA1'protein_coding'512AELoss-45.944EU ES AB E5_Da100.00
6810.48NLRC5'protein_coding'452AEGain34.9116EU ES AB IR CE E18_Aa66.67
7910.19CNOT8'protein_coding'2560AELoss-42.0211EU AB E3_Ab60.00
81110.05MLLT3'protein_coding'1028AELoss-27.5711EU ES AB E8a_E10a100.00
91210.03NET1'protein_coding'722AELoss-47.521AB E12_Aa0
10139.98HHLA2'protein_coding'1029AELoss-13.2116EU ES AB E1_Da58.33
11149.87ANTXR2'protein_coding'1142AELoss-73.8411EU ES AB E6a_E9a28.57
12159.65TIAL1'protein_coding'1445AELoss-81.8713EU AB E14_Dd62.50
13169.64HLA-DPB1'protein_coding'1022AELoss-53.061EU E2a_E2d0
14179.58C4orf43'protein_coding'921AELoss-20.905EU AB E2_Da50.00
15189.54CD46'protein_coding'2736AELoss-111.7113EU AB E5_Ad57.14
16199.47FAM69B'protein_coding'26AELoss-34.632AB IR E2_Aa0
17209.46LSM5'protein_coding'1021AELoss-28.023EU ES AB E1_Da100.00
18219.45MTCH2'protein_coding'113AELoss-57.523EU ES AB E9_Da0.00
19229.37YY1'protein_coding'15AELoss-64.031AB E4_Aa0
20239.35CLDND1'protein_coding'3568AELoss-43.584EU AB E4_Db0
21249.28CD36'protein_coding'2050AELoss-18.057EU AB E17_Aa0.00
22259.27PFKL'protein_coding'1243AELoss-65.002EU AB ER13d0
23269.16PARP9'protein_coding'824AELoss-48.9710EU AB E4_Db25.00
24279.15DCTN4'protein_coding'1541AELoss-34.616EU ES AB E8_Aa33.33
25289.13POLR2H'protein_coding'1433AELoss-47.3710EU ES AB E4_Ac20.00
26299.10CACNA2D2'protein_coding'1053AELoss-34.4020EU ES AB E37_Da56.25
27309.09STK38'protein_coding'217AELoss-74.714EU AB E10_Aa100.00
28319.03ARFGAP2'protein_coding'522AELoss-157.503AB CE E12_Aa0
29328.87RP11-439E19.3'processed_transcript'515AELoss-28.0816EU AB IR E1b_E2a33.33
30338.87PHF11'protein_coding'1944AELoss-59.8720EU ES AB IR E8_Aa44.44
31348.84PTPRC'protein_coding'1854AELoss-142.636EU ES E4a_E9a60.00
32358.84TSNAX'protein_coding'616AELoss-47.312EU AB E3_Ab0
33368.82TGOLN2'protein_coding'615AELoss-152.717EU AB CE E4_Ac0.00
34378.80XPO1'protein_coding'2678AELoss-53.4217EU ES AB E8d_E8e30.00
35388.79STAT5B'protein_coding'730AELoss-55.354EU ES AB E10_Ac0.00
36398.73PTMA'protein_coding'1439AELoss-66.579EU ES AB ENST0000041006440.00
37408.70ARPC5L'protein_coding'310AELoss-34.9312EU AB IR CE E3_Da0
38418.67UHRF2'protein_coding'1342AELoss-78.1117EU ES AB E15_Ab66.67
39438.63LILRB4'protein_coding'1339AELoss-19.764EU AB E14_Ac100.00
40448.62DPYD'protein_coding'735AELoss-38.102ES AB E3_Da0
41458.62TTF2'protein_coding'841AELoss-46.057EU ES AB E14_Aa0.00
42468.61FUBP1'protein_coding'1746AELoss-47.328EU AB IR ER20c0.00
43478.60SFRS6'protein_coding'39AELoss-29.715EU AB E2a_E3a66.67
44488.60NIT2'protein_coding'723AELoss-26.376EU AB E5_Ab0.00
45498.53MARCH6'protein_coding'1454AELoss-84.128EU AB E14_Ab75.00
46508.52HMGN1'protein_coding'2146AELoss-41.9919EU AB ER4k53.33
47518.49STAT3'protein_coding'942AELoss-48.691AB E20_Ad0
48528.46ILF2'protein_coding'420AELoss-44.211ES E9a_E11a0
49538.45TEX261'protein_coding'821AELoss-49.102EU ER5c0.00
50548.44RP11-1280I22.1'protein_coding'1122AELoss-1020.2622EU AB E1_Da76.47
51558.43THOC2'protein_coding'2387AELoss-46.5011EU ES AB ER31f42.86
52568.42C19orf61'protein_coding'114AELoss-43.441AB E9_Da0
53578.40IDH3B'protein_coding'1441AELoss-70.453EU AB E6_Ab100.00
54588.34TMEM41A'protein_coding'720AELoss-35.5811EU ES AB E7_Aa0.00
55598.33SFRS11'protein_coding'2052AELoss-67.1440EU ES AB IR E5_Af73.68
56608.32AP2A2'protein_coding'635AELoss-27.421AB E18_Aa0
57618.31PITPNB'protein_coding'1337AELoss-35.044EU ES AB E4a_E7c0.00
58628.31WDR6'protein_coding'2149AELoss-172.449EU AB E6_Dp25.00
59638.30PHPT1'protein_coding'718AELoss-41.652EU AB E3_Da0
60648.28CD47'protein_coding'722AELoss-33.1715EU AB IR E8_Aa50.00
61658.27SATB1'protein_coding'1949AEGain29.417EU ES AB E15_Aa0.00
62678.23C17orf85'protein_coding'315AELoss-47.527EU ES AB IR E8_Da75.00
63688.19NUP188'protein_coding'1369AELoss-40.452EU AB E25_Aa0
64698.16CTAGE5'protein_coding'736AELoss-152.606EU ES ENST0000034174940.00
65718.15CPEB3'protein_coding'314AELoss-180.715EU AB E3_Aa0.00
66728.14DDX17'protein_coding'1640AELoss-150.4918EU ES AB ER14c63.64
67738.14KAT2A'protein_coding'221AELoss-58.923EU AB E6b_E7a100.00
68748.11DGKA'protein_coding'731AELoss-40.614EU ES AB E15_Aa0.00
69758.11C15orf29'protein_coding'110AELoss-27.812AB E8_Da0
70768.09COPS5'protein_coding'1340AELoss-33.2712EU ES AB E11_Da22.22
71778.06DDX3X'protein_coding'629AELoss-39.193ES E16a_E19a0.00
72798.03TADA3'protein_coding'621AELoss-23.051CE I5_AR10
73808.03NOL11'protein_coding'118AELoss-34.034EU ES AB E9a_E11a0.00
74838.00KIAA1967'protein_coding'1447AELoss-40.298EU ES AB E13_Aa0.00
75848.00SRP54'protein_coding'116AELoss-89.972ES AB E14_Aa0
76857.96MINA'protein_coding'1132AELoss-29.4910EU AB CE ER7a60.00
77867.95FAF2'protein_coding'623AELoss-33.472AB E6_Db0
78877.94KIAA0406'protein_coding'618AELoss-38.824EU ES AB E5_Aa50.00
79887.93GBP5'protein_coding'723AELoss-14.096EU AB E1_Af100.00
80917.91TMEM165'protein_coding'1128AELoss-99.2926EU AB IR CE E8_Ad37.50
81937.86RP11-439E19.8'protein_coding'214AELoss-7.849EU ES AB E7_Da33.33
82947.85ITGA4'protein_coding'1250AELoss-59.686EU ES E13a_E15c60.00
83957.83GPM6B'protein_coding'1128AELoss-24.906EU ES AB ER14b0.00
84977.82B4GALT6'protein_coding'311AELoss-27.521AB E3_Aa0
85987.81NBN'protein_coding'1138AELoss-27.871AB E5_Da0
86997.80IGHV3-43'IG_V_gene'12AELoss-21.471EU ER1a0
871007.80LPAR5'protein_coding'35AELoss-50.262EU ES E1a_E3a100.00
881017.79PDE4DIP'protein_coding'29100AEGain16.5756EU ES AB E8a_E9f53.19
891027.78KCNN4'protein_coding'211AELoss-31.553EU AB E1_Da0
901037.78AC068580.3'protein_coding'49AELoss-34.0010EU AB IR CE E1_Da33.33
911047.77DNAJB6'protein_coding'2257AELoss-25.0616EU ES AB CE E10a_E10c20.00
921057.76PRTN3'protein_coding'15DELoss-217.311EU PRTN30
931067.75ZNF259'protein_coding'827AELoss-30.843EU AB E7_Aa0
941077.75PABPC1'protein_coding'2468AELoss-20.914EU AB ENST00000517921100.00
951087.75AC004410.1'protein_coding'427AELoss-93.815EU AB E11_Dc100.00
961097.74MLF1IP'protein_coding'623AELoss-22.482ES AB E13_Aa0
971107.72HK1'protein_coding'2460AELoss-133.218EU ES AB E10_Ab75.00
981117.71ADPGK'protein_coding'514AELoss-76.133ES AB E5_Aa0.00
991127.70RMND5A'protein_coding'415AELoss-20.581AB E7_Aa0
1001137.67CREB1'protein_coding'1743AELoss-28.057EU ES AB E1_Dc0.00
1011147.66PSME4'protein_coding'1269AELoss-30.154EU AB E43_Aa0
1021157.66MAT2A'protein_coding'1029AELoss-26.4523EU ES AB E3b_E3e18.18
1031167.65PPTC7'protein_coding'16AELoss-26.912AB E4_Da0
1041177.64RDH11'protein_coding'29AELoss-84.341AB E2_Da0
1051187.62UBA7'protein_coding'1143AELoss-128.6520EU ES AB E8_Dc25.00
1061197.62UBE2J2'protein_coding'2249AELoss-31.669EU ES AB E7_Db25.00
1071207.61EEF1D'protein_coding'916AELoss-25.154EU ES E4a_E5b33.33
1081227.60ADRM1'protein_coding'620AELoss-14.045EU ES AB IR E2a_E5a0.00
1091237.60SSBP1'protein_coding'1433AELoss-22.316EU CE E1d_E2a0.00
1101247.59THRAP3'protein_coding'522AELoss-25.951ES E3a_E5a0
1111257.57SFXN3'protein_coding'927AELoss-63.7910EU AB ER9d40.00
1121267.56MED12L'protein_coding'958AELoss-14.2031EU AB E6a_E7a52.17
1131277.56UNC45A'protein_coding'1244AELoss-83.665EU AB E7a_E7b33.33
1141287.55GGA2'protein_coding'117AELoss-31.062AB E3_Da0
1151297.54RIOK3'protein_coding'316AELoss-28.853EU AB E11_Aa0.00
1161317.53APIP'protein_coding'310AELoss-13.972EU ES ER2a100.00
1171327.53SFT2D1'protein_coding'619AELoss-31.535EU AB CE E6_Da0.00
1181337.52TBC1D10B'protein_coding'824AELoss-31.762EU AB E2_Aa0
1191347.52SRPK2'protein_coding'1857AEGain21.9921EU ES AB IR CE E26_Aa54.55
1201357.51SERPINB9'protein_coding'17AELoss-23.362EU AB E4_Da0
1211367.50LPAR6'protein_coding'923AEGain20.385EU ES E4a_E5a25.00
1221377.49LOXL3'protein_coding'1032AELoss-16.955EU ES AB E3_Aa0.00
1231387.48NT5C3'protein_coding'1231AELoss-31.0510EU ES AB E2a_E3a71.43
1241397.46ECD'protein_coding'724AELoss-24.945EU AB E6_Aa0.00
1251407.46TOP3A'protein_coding'835AELoss-31.298EU AB E5_Aa33.33
1261417.45CDC7'protein_coding'721AELoss-17.227EU AB E1_Da100.00
1271427.44HSPG2'protein_coding'19132AEGain10.8126EU AB E78_Aa22.22
1281437.44SULT1A1'protein_coding'718AELoss-31.2618EU ES AB E2_Da84.62
1291447.44PPP3CB'protein_coding'826AELoss-21.372EU AB E13_Aa0
1301457.43ACSL4'protein_coding'1240AELoss-28.637EU ES AB E5_Ab33.33
1311467.42TSPAN32'protein_coding'2042AEGain9.1727EU AB E10i_E11c52.94
1321477.41DTYMK'protein_coding'822AELoss-19.238EU AB E7_Da0.00
1331487.40RNASET2'protein_coding'1650AELoss-63.7224EU ES AB ER12c50.00
1341497.39TBRG1'protein_coding'720AELoss-54.1815EU ES AB IR E5_Da25.00
1351507.38TAPT1'protein_coding'1962AELoss-64.6317EU ES AB E18_Aa30.00
1361517.37LMAN1'protein_coding'113AELoss-91.592EU CE I5_AR40
1371537.35ZNF273'protein_coding'721AELoss-85.477EU ES AB E6_Aa50.00
1381547.35KIAA1147'protein_coding'212AELoss-26.783AB E10_Aa0
1391557.35MYO1F'protein_coding'335AELoss-72.761AB E8_Da0
1401567.35GLMN'protein_coding'627AELoss-18.486EU AB CE E17_Aa0.00
1411577.33ACSS1'protein_coding'519AELoss-29.114ES AB E13_Aa0.00
1421587.31CELF2'protein_coding'1026AELoss-18.522ES AB E15a_E16b0
1431597.31AP1G1'protein_coding'634AELoss-27.1311EU ES AB E19_Aa20.00
1441607.31SLC30A5'protein_coding'1035AELoss-16.185EU AB E9_Da100.00
1451617.31C7orf50'protein_coding'920AEGain28.799EU AB IR E3_Da50.00
1461627.30KIF9'protein_coding'1549AEGain18.0618EU ES AB IR E7_Aa45.45
1471637.30MDM4'protein_coding'1256AEGain5.4115EU ES AB E17a_E18a36.36
1481647.29FAM116B'protein_coding'734AELoss-16.207EU AB ER6d20.00
1491657.29NR3C1'protein_coding'1939AELoss-18.106EU ES AB E18_Da0.00
1501667.29ATP6AP1'protein_coding'1130AELoss-27.383EU AB E1_Db0.00
1511677.27ENOSF1'protein_coding'422AEGain19.2927EU ES AB IR I15_SR145.45
1521687.27CD9'protein_coding'616DELoss-56.446EU ES AB CD933.33
1531697.27AK3'protein_coding'616AELoss-67.096EU AB ER5a0.00
1541707.25LRCH3'protein_coding'1958AELoss-92.9811EU ES AB E22_Aa20.00
1551717.25EXOC3'protein_coding'1139AELoss-47.1931EU ES AB IR E9_Ab72.22
1561727.25AC135983.5'protein_coding'16AEGain19.281AB E2_Aa0
1571737.24RP11-397P14.3'pseudogene'215AEGain8.346EU ES AB E8a_E10a75.00
1581747.24EIF4G3'protein_coding'1663AELoss-23.952ES E12a_E15b0.00
1591757.24EIF5'protein_coding'213AELoss-63.3210ES AB IR CE E6_Aa0
1601767.22IVNS1ABP'protein_coding'1031AELoss-30.908EU AB E10_Aa75.00
1611777.21COMMD3'protein_coding'2040AELoss-38.777EU AB ER4m50.00
1621787.21COX17'protein_coding'718AELoss-17.404EU ES AB E6_Da0.00
1631797.21ARHGAP30'protein_coding'1036AEGain20.073EU ES E6a_E7b50.00
1641807.21LIMS1'protein_coding'1534AELoss-13.977EU ES AB ENST0000047403820.00
1651817.20RPL23A'protein_coding'718AEGain20.922EU ES ENST000003557310.00
1661827.20HGSNAT'protein_coding'1343AELoss-30.1312EU AB IR ENST0000052067866.67
1671837.20SIVA1'protein_coding'24AELoss-22.501AB E3_Da0
1681847.19VPRBP'protein_coding'536AELoss-25.037EU ES IR E3a_E5a25.00
1691857.19FAM104A'protein_coding'37AELoss-14.313EU ES AB E1a_E4a100.00
1701867.18RUFY1'protein_coding'1651AELoss-21.7513EU AB E18_Aa42.86
1711877.17RIPK1'protein_coding'519AELoss-29.954EU AB E6_Da0.00
1721887.17HS2ST1'protein_coding'1131AELoss-18.6618EU ES AB ER11b50.00
1731897.16ARID5A'protein_coding'820AELoss-25.423EU AB E2_Da0
1741907.16TRABD'protein_coding'622AELoss-66.777EU E2a_E3b33.33
1751917.16CALCOCO1'protein_coding'622AELoss-123.061AB E13_Da0
1761927.16WHAMML2'lincRNA'318AELoss-47.1316EU ES AB CE E1c_E2a66.67
1771937.15ORC3L'protein_coding'630AELoss-23.693ES AB E16_Da0
1781947.15SHMT1'protein_coding'726AELoss-14.454EU ES AB E14_Da100.00
1791957.15MIER3'protein_coding'1235AELoss-23.394EU E8b_E9a33.33
1801967.13POLE'protein_coding'556AELoss-65.355EU AB E16_Da0.00
1811977.13RARS'protein_coding'935AELoss-18.599EU AB IR I650.00
1821987.13MTERFD1'protein_coding'518AELoss-22.183EU AB CE E2_Aa0
1831997.13VPS52'protein_coding'1344AELoss-58.639EU AB E15_Aa33.33
1842007.13YIPF3'protein_coding'2055AELoss-24.504EU ER3b33.33
1852017.13RNF123'protein_coding'1475AELoss-80.8512EU AB E32_Db33.33
1862027.13MLH1'protein_coding'2768AELoss-16.548EU ES AB E1_Al60.00
1872037.12OTUD6B'protein_coding'413AELoss-24.818EU ES AB E2_Da50.00
1882047.11CDC16'protein_coding'1237AELoss-72.8714EU ES AB IR E9_Aa40.00
1892057.11RP11-347C12.1'protein_coding'316AEGain8.594EU CE I1_SR100
1902067.10TRPT1'protein_coding'311AELoss-20.614AB IR E5_Da0
1912077.09LIN52'protein_coding'16AELoss-21.731AB E1_Da0
1922087.08DECR1'protein_coding'1950AELoss-24.636EU ES AB E2_Aa25.00
1932097.07SIRT2'protein_coding'2055AELoss-31.2113EU AB IR E2_Ac75.00
1942107.07ARV1'protein_coding'716AELoss-15.418EU ES AB ER1c50.00
1952117.07RAB34'protein_coding'2256AELoss-21.375EU ES AB E6f_E6d0.00
1962127.06PMPCA'protein_coding'621AELoss-30.835EU AB ER6d100.00
1972137.05NCBP1'protein_coding'530AELoss-17.893ES AB E9b_E11a0
1982147.04STX7'protein_coding'622AELoss-15.391AB E4_Db0
1992157.04UTP18'protein_coding'831AELoss-15.481AB E8_Da0
2002167.03WRN'protein_coding'339AELoss-22.5310EU AB CE E20_Da0.00
2012177.02INTS3'protein_coding'1250AELoss-156.988EU AB E20_Aa20.00
2022187.02ST3GAL6'protein_coding'2867AELoss-24.7427EU ES AB CE E11_Da21.43
2032197.00ADRBK1'protein_coding'222AELoss-24.241EU E12a_E13a0
2042206.99DCTN6'protein_coding'617AELoss-17.582EU AB E5_Da0
2052216.99AC006427.1'lincRNA'13AEGain15.336AB CE I1_AR40
2062226.98SCAPER'protein_coding'235AEGain23.5215EU E24a_E25a42.86
2072236.98CDK8'protein_coding'520AELoss-23.102EU AB E10_Ab0
2082246.97SUGP1'protein_coding'216AELoss-61.116EU ES E2a_E4a40.00
2092256.95CCDC99'protein_coding'1854AELoss-14.323EU AB E3_Da0
2102266.95AC058791.2'processed_transcript'823AEGain15.1115EU ES AB CE I6_AR250.00
2112276.94PRDM15'protein_coding'1756AEGain15.4916EU ES AB E32_Df33.33
2122286.94FAM78A'protein_coding'49AELoss-19.984ES AB E2_Db0
2132296.93MATR3'protein_coding'48110AELoss-15.3225EU ES AB E6a_E15b68.42
2142306.93RALGAPA2'protein_coding'1154AEGain22.008EU AB CE I33_AR50.00
2152316.93TOP2A'protein_coding'557AELoss-19.533EU ES AB E23a_E25a0.00
2162326.93STK25'protein_coding'3379AELoss-65.4713EU ES AB E8_De42.86
2172336.93COPG2'protein_coding'416AELoss-24.036EU AB E11_Aa0.00
2182346.92SUZ12'protein_coding'421AELoss-14.073EU AB E8a_E9b0.00
2192356.92TBCB'protein_coding'411AELoss-20.691AB E2_Da0
2202366.92AOAH'protein_coding'1039AELoss-14.613EU AB E1_Ab0.00
2212376.92ZNF691'protein_coding'1019AELoss-43.9810EU AB ER2b71.43
2222386.91HLA-H'pseudogene'29AELoss-18.925EU AB IR E2_Aa0
2232396.90ZFAND2B'protein_coding'2048AELoss-107.0523EU AB E5_Da18.18
2242406.89LSS'protein_coding'1138AELoss-107.897EU AB IR E20_Aa0
2252426.89MYLK'protein_coding'2265AELoss-56.0310EU AB ENST0000050824025.00
2262436.89GSPT1'protein_coding'419AELoss-15.021ES E7a_E9a0
2272446.89PKMYT1'protein_coding'518AELoss-23.503AB IR E4_Aa0
2282456.88RP11-262H14.1'processed_transcript'310AEGain10.7120EU ES AB IR ER4a50.00
2292466.88FUS'protein_coding'1135AELoss-56.623EU ES AB E4_Da0.00
2302476.88TMEM106A'protein_coding'19AEGain12.935ES AB CE I4_SR10
2312486.87SLC2A5'protein_coding'1236AELoss-67.167EU ES AB E12_Dc75.00
2322496.87CSF3R'protein_coding'2042AELoss-66.523EU AB E3_Da0
2332506.87ZMIZ2'protein_coding'1646AELoss-130.4719EU AB IR E6_Da28.57
2342516.86NAB1'protein_coding'1133AELoss-19.9516EU ES AB E4_Da37.50
2352526.86DMTF1'protein_coding'2864AEGain12.3217EU ES AB IR CE I5_SR10.00
2362536.85RYK'protein_coding'930AELoss-16.508EU AB CE E11_Ab66.67
2372546.85WBP1'protein_coding'1542AELoss-37.4118EU AB ER1r72.73
2382556.84ATL2'protein_coding'1744AELoss-19.847EU AB E8_Da33.33
2392566.83STARD3'protein_coding'831AELoss-65.323EU AB E6_Db0
2402576.83TMEM175'protein_coding'2253AELoss-53.1126EU ES AB E3_Db85.71
2412596.82LPCAT4'protein_coding'114AELoss-21.711AB E11_Da0
2422606.81DDX39'protein_coding'519AELoss-21.898EU AB E7_Da0
2432616.81ING4'protein_coding'2346AEGain15.312ES E1a_E4a0.00
2442626.81ZNF91'protein_coding'25AEGain11.953EU AB E3_Da100.00
2452636.80INO80'protein_coding'341AELoss-57.614EU AB E32_Aa0
2462646.80PITPNA'protein_coding'112AELoss-17.172CE I1_SR30
2472656.79EXOC6'protein_coding'833AELoss-15.398EU ES CE E1a_E3a75.00
2482676.79MED1'protein_coding'219AELoss-19.945EU ES AB IR E11a_E13a0.00
2492686.78GTF2I'protein_coding'2170AELoss-21.4713EU ES AB ENST0000048223230.00
2502696.78C3orf64'protein_coding'833AELoss-9.395EU AB E12_Aa100.00
2512706.77CENPT'protein_coding'418AELoss-108.327EU AB IR E9_Db0


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1511.09MAPK8IP3'protein_coding'234AEGain75.055EU AB CE I1_AR30
2810.48NLRC5'protein_coding'452AEGain34.9116EU ES AB IR CE E18_Aa66.67
3658.27SATB1'protein_coding'1949AEGain29.417EU ES AB E15_Aa0.00
41017.79PDE4DIP'protein_coding'29100AEGain16.5756EU ES AB E8a_E9f53.19
51347.52SRPK2'protein_coding'1857AEGain21.9921EU ES AB IR CE E26_Aa54.55
61367.50LPAR6'protein_coding'923AEGain20.385EU ES E4a_E5a25.00
71427.44HSPG2'protein_coding'19132AEGain10.8126EU AB E78_Aa22.22
81467.42TSPAN32'protein_coding'2042AEGain9.1727EU AB E10i_E11c52.94
91617.31C7orf50'protein_coding'920AEGain28.799EU AB IR E3_Da50.00
101627.30KIF9'protein_coding'1549AEGain18.0618EU ES AB IR E7_Aa45.45
111637.30MDM4'protein_coding'1256AEGain5.4115EU ES AB E17a_E18a36.36
121677.27ENOSF1'protein_coding'422AEGain19.2927EU ES AB IR I15_SR145.45
131727.25AC135983.5'protein_coding'16AEGain19.281AB E2_Aa0
141737.24RP11-397P14.3'pseudogene'215AEGain8.346EU ES AB E8a_E10a75.00
151797.21ARHGAP30'protein_coding'1036AEGain20.073EU ES E6a_E7b50.00
161817.20RPL23A'protein_coding'718AEGain20.922EU ES ENST000003557310.00
172057.11RP11-347C12.1'protein_coding'316AEGain8.594EU CE I1_SR100
182216.99AC006427.1'lincRNA'13AEGain15.336AB CE I1_AR40
192226.98SCAPER'protein_coding'235AEGain23.5215EU E24a_E25a42.86
202266.95AC058791.2'processed_transcript'823AEGain15.1115EU ES AB CE I6_AR250.00
212276.94PRDM15'protein_coding'1756AEGain15.4916EU ES AB E32_Df33.33
222306.93RALGAPA2'protein_coding'1154AEGain22.008EU AB CE I33_AR50.00
232456.88RP11-262H14.1'processed_transcript'310AEGain10.7120EU ES AB IR ER4a50.00
242476.88TMEM106A'protein_coding'19AEGain12.935ES AB CE I4_SR10
252526.86DMTF1'protein_coding'2864AEGain12.3217EU ES AB IR CE I5_SR10.00
262616.81ING4'protein_coding'2346AEGain15.312ES E1a_E4a0.00
272626.81ZNF91'protein_coding'25AEGain11.953EU AB E3_Da100.00
282666.79CHN1'protein_coding'1951DEGain110.770N/ACHN1N/A
292716.77ORAOV1'protein_coding'310AEGain44.9810AB CE I3_AR30
302726.77SAT1'protein_coding'1028AEGain14.725EU ES AB E2b_E3f33.33
312766.75DAZAP2'protein_coding'713AEGain21.841EU ENST000004369000
322826.73BOD1L'protein_coding'741AEGain12.165ES AB E5_Da0
332866.72HIST1H2BC'protein_coding'23AEGain20.344EU AB E1_Da50.00
342936.69TRIM23'protein_coding'729AEGain14.9512EU ES AB E7_Da33.33
352996.66AC008280.5'processed_transcript'28AEGain16.146EU AB E4a_E5a100.00
363006.65C1orf9'protein_coding'532AEGain9.067EU ES AB E16a_E19a50.00
373016.65NXT2'protein_coding'511AEGain66.702EU AB ENST000002180040
383026.64SSR4'protein_coding'1329AEGain9.008EU AB E1b_E2c33.33
393086.60REEP4'protein_coding'719AEGain8.863EU ES AB ENST00000334530100.00
403096.60SFRS15'protein_coding'832AEGain13.296EU ES AB E8a_E10a33.33
413146.59ADAMTS10'protein_coding'330AEGain10.2616EU AB E5_Aa30.00
423176.59SLC35B3'protein_coding'619AEGain13.326EU ENST0000041310840.00
433326.56RBM5'protein_coding'2678AEGain6.2221EU ES AB E6d_E19a33.33
443426.52ZNF700'protein_coding'26AEGain8.774EU AB E3_Da0
453446.52HM13'protein_coding'2765AEGain17.644EU ES AB E6b_E7a50.00
463626.47C20orf96'protein_coding'313AEGain9.228EU AB IR CE I3_AR1100.00
473686.45ZNF69'protein_coding'310AEGain6.783EU E4a_E5a50.00
483706.45FAM13A'protein_coding'2466AEGain12.1025EU ES AB E8a_E10a38.89
493856.41AC106782.7'protein_coding'115AEGain5.854EU ES CE I9_SR30.00
503876.41BMP3'protein_coding'36DEGain85.180N/ABMP3N/A
513896.41BAIAP2'protein_coding'724AEGain16.486EU ES E5a_E6a60.00
523956.39AC140134.1'processed_transcript'210AEGain12.374EU ES E6a_E7a0.00
533966.38TIMD4'protein_coding'313AEGain9.893EU ES E3a_E5a0.00
543976.38LRCH1'protein_coding'734AEGain12.346EU AB CE E6_Aa0
554046.37ANKS1A'protein_coding'329AEGain10.913EU AB CE E10_Aa0
564096.36SNRNP27'protein_coding'515AEGain12.994EU ES AB E4a_E6a0.00
574126.35HIP1R'protein_coding'338AEGain18.699EU AB E11a_E12a57.14
584146.35OAS1'protein_coding'512AEGain5.092EU ENST000003616290.00
594166.35CLSTN3'protein_coding'220AEGain7.083EU CE I10_AR10.00
604216.33AD000671.3'protein_coding'443AEGain10.298EU AB E15_Da16.67
614246.33TGIF1'protein_coding'1016AEGain11.338EU AB ER9b0.00
624256.32RP1-111D6.3'processed_transcript'37DEGain80.150N/ARP1-111D6.3N/A
634546.24SSH2'protein_coding'318AEGain34.006EU AB IR CE I2_SR70.00
644596.23RP4-717I23.3'processed_transcript'2364AEGain6.2221EU ES AB E5a_E13a62.50
654606.23ZNF696'protein_coding'616AEGain11.724EU AB E3_Da0
664696.21RPGRIP1L'protein_coding'227AEGain14.0319EU ES CE E26a_E27a62.50
674736.20SLC25A25'protein_coding'923AEGain13.362EU ES E2a_E5b0.00
684776.20KLF7'protein_coding'923AEGain6.164EU ES AB E6g_E8a50.00
694826.19TRAF3IP1'protein_coding'627AEGain10.473EU AB E18_Db0.00
704836.19KBTBD8'protein_coding'610AEGain35.455EU AB E3_Da50.00
714856.19ZNF484'protein_coding'48AEGain13.001AB E1_Da0
724896.18FKBP9'protein_coding'1539AEGain8.425EU ES AB E10_Db50.00
734996.16CLYBL'protein_coding'1021AEGain7.724EU AB E8_Aa100.00
745026.16C19orf55'protein_coding'419AEGain6.915EU AB E4_Aa100.00
755036.16ATAD3B'protein_coding'936AEGain7.578EU AB E8_Db0.00
765086.15SNX13'protein_coding'1557AEGain31.5511EU ES AB CE E23a_E24a16.67
775126.15COL24A1'protein_coding'670AEGain13.2719EU ES AB CE E7_Aa31.25
785166.14ZNF335'protein_coding'639AEGain6.339EU AB IR CE E4_Aa100.00
795316.11PSD3'protein_coding'1956AEGain15.0012EU ES AB CE I21_AR328.57
805326.11ZBTB49'protein_coding'717AEGain7.804EU ES AB E3b_E8a0.00
815406.10ERN1'protein_coding'225AEGain6.4111EU AB E9_Da25.00
825526.09DOT1L'protein_coding'948AEGain10.562EU AB E30c_E31a0
835566.09MRPS27'protein_coding'1848AEGain14.023EU AB E2d_E3a0.00
845596.08DDX12'protein_coding'434AEGain8.9112EU AB CE I5_AR242.86
855636.07CCDC52'protein_coding'730AEGain11.664EU ES AB E7_Aa0.00
865676.06PCNXL2'protein_coding'2580AEGain12.2416EU ES AB E16a_E17a55.56
875766.04KIAA0182'protein_coding'1437AEGain6.057EU AB E16_Da60.00
885936.01TAS2R14'protein_coding'26AEGain13.276EU ES AB CE E2a_E5b50.00
896066.00STXBP2'protein_coding'429AEGain13.943EU ES AB E21_Aa0.00
906175.97DHFRL1'protein_coding'512AEGain13.985AB E3_Dc0
916205.96IQGAP3'protein_coding'445AEGain12.757EU AB E2_Aa0.00
926305.95ISCA2'protein_coding'14AEGain13.171ES E1a_E4a0
936325.94FAM200B'protein_coding'2246AEGain23.594EU AB E4_Ab100.00
946395.93AMZ2'protein_coding'914AEGain11.671ES E1c_E3a0
956475.92XRRA1'protein_coding'522AEGain9.0011EU ES AB E10b_E15a37.50
966555.91RREB1'protein_coding'1251AEGain6.3022EU ES AB CE E6_Aa44.44
976595.91DPP4'protein_coding'1146DEGain60.100N/ADPP4N/A
986615.90POLM'protein_coding'1848AEGain5.928EU AB ENST0000033519516.67
996635.90SNCA'protein_coding'1123AEGain11.004EU ES I6_SR650.00
1006705.88PTGIS'protein_coding'315DEGain59.000N/APTGISN/A
1016735.88NIPBL'protein_coding'962AEGain14.076EU ES IR CE I1_AR10.00
1026765.88AP000688.8'processed_transcript'12DEGain58.850N/AAP000688.8N/A
1036865.87PAX5'protein_coding'1825AEGain13.273EU AB E1_Da0
1046925.86KDM6A'protein_coding'1145AEGain11.9913EU AB IR CE I2_AR80
1056965.85MGAT5'protein_coding'524AEGain13.607EU ES AB CE E1a_E3c33.33
1066985.85KLHL6'protein_coding'415AEGain9.343EU ES AB E1a_E6a0.00
1076995.85SFXN5'protein_coding'2459AEGain9.5914EU ES AB E2a_E11a25.00
1087025.84ZNF141'protein_coding'513AEGain13.265EU ES AB E3a_E6a0.00
1097075.84PUS7'protein_coding'628AEGain10.284EU AB CE E5_Da0.00
1107085.84CTC-281B15.1'processed_transcript'718AEGain9.904EU ES AB E3a_E5b50.00
1117135.83ERGIC3'protein_coding'2256AEGain13.442EU ES E8a_E9c0.00
1127155.83PIGL'protein_coding'922AEGain8.3711EU ES AB CE E2_Da80.00
1137165.83MS4A4A'protein_coding'410AEGain10.323EU ES AB E3a_E6a0.00
1147205.83ARID4B'protein_coding'1457AEGain11.8521EU AB IR CE E11_Aa50.00
1157245.82HERC1'protein_coding'381AEGain9.365EU ES AB E68a_E70a0.00
1167265.81MSR1'protein_coding'1443AEGain44.8326EU ES AB ER11b72.22
1177295.81PIGO'protein_coding'930AEGain10.036EU AB E2_Db0.00
1187315.81PPP1R12B'protein_coding'2258AEGain9.739EU ES AB E13_Aa0.00
1197375.80ZHX3'protein_coding'1331AEGain10.327EU AB E8_Da50.00
1207445.79PEX1'protein_coding'1145AEGain9.4013EU AB E8a_E9a50.00
1217455.78TASP1'protein_coding'822AEGain9.405EU AB E6_Da50.00
1227465.78ZNF845'protein_coding'38AEGain11.941EU E1a_E2a0
1237475.78IGHD'IG_C_gene'17AEGain10.651ES E5a_E7a0
1247495.78STXBP5'protein_coding'736AEGain11.926EU ES AB CE E21a_E23a33.33
1257515.78AFF4'protein_coding'936AEGain10.027EU AB CE E6_Db0.00
1267555.77ANO10'protein_coding'1750AEGain10.264EU ES AB E1a_E11a50.00
1277695.76NUP85'protein_coding'322AEGain12.902EU ES E1a_E3a0.00
1287705.76SMURF1'protein_coding'834AEGain8.749AB CE I1_AR30
1297725.76C20orf194'protein_coding'342AEGain10.1319EU AB CE I16_AR133.33
1307755.75CBLL1'protein_coding'1023AEGain11.513EU ES E3b_E5b50.00
1317765.75SBNO2'protein_coding'547AEGain24.8410EU ES AB E5_Aa50.00
1327835.74MACF1'protein_coding'30158AEGain12.594AB CE I68_SR30
1337895.73SIK3'protein_coding'1651AEGain9.719ES AB CE I1_SR40
1347905.73EAF2'protein_coding'515AEGain9.574ES IR E3a_E5a0.00
1357985.72HLA-K'pseudogene'210AEGain7.244EU ES AB E4_Aa0.00
1368085.71KIAA1468'protein_coding'233AEGain10.699EU AB IR CE I1_AR20.00
1378125.71AC022087.1'lincRNA'24AEGain5.892EU AB E2_Da0
1388185.69MSTN'protein_coding'13DEGain51.710N/AMSTNN/A
1398285.68ZNF764'protein_coding'25AEGain8.561EU E2a_E3b0
1408375.67AC027139.3'protein_coding'15AEGain11.071AB E4_Da0
1418545.63GCAT'protein_coding'723AEGain8.981AB E10_Aa0
1428615.62GPR18'protein_coding'48AEGain11.013EU AB E4_Aa0
1438655.62PCSK7'protein_coding'117AEGain8.754EU ES CE I12_SR40.00
1448785.60NBPF8'processed_transcript'1643AEGain6.3215EU ES AB E5a_E15d30.00
1458815.60C1orf192'protein_coding'15AEGain6.735EU AB CE E2a_E3a100.00
1468835.59SEC61A2'protein_coding'1641AEGain7.3929EU ES AB IR E4_Da54.55
1478845.59AC009961.3'processed_transcript'25AEGain10.482EU AB E2_Aa0
1488875.58ZNF761'processed_transcript'922AEGain8.448EU ES AB E2a_E8b40.00
1499015.57LRRC37B2'processed_transcript'519AEGain8.381EU E4a_E5b0
1509105.55USO1'protein_coding'737AEGain7.972EU E13a_E14a100.00
1519125.55GBGT1'protein_coding'718AEGain10.978EU ES AB CE E5_Aa0.00
1529145.55FBF1'protein_coding'433AEGain7.248EU AB E5_Da60.00
1539295.54ZNF506'protein_coding'28AEGain7.805EU ES AB E3a_E6a100.00
1549305.54DHX32'protein_coding'416AEGain8.513EU AB E7_Aa0.00
1559345.53DLC1'protein_coding'1648AEGain28.168EU AB IR I21_SR1100.00
1569385.53HLA-DOB'protein_coding'413AEGain8.165AB E3_Dc0
1579395.53RNF19A'protein_coding'1644AEGain12.3511EU ES AB CE I7_AR325.00
1589405.53TBCCD1'protein_coding'617AEGain12.123EU ES ER10b0.00
1599425.52RRN3P3'protein_coding'17AEGain9.343AB CE E7_Aa0
1609515.52SLC16A3'protein_coding'38AEGain7.882AB E4_Aa0
1619575.50ALG5'protein_coding'620AEGain7.961EU ENST000004135370
1629625.50ZNF678'protein_coding'513AEGain8.116EU ES AB E2b_E5a0.00
1639695.49DTX2'protein_coding'2558AEGain9.105EU AB E20_Da0.00
1649745.49PROSC'protein_coding'1231AEGain27.781EU ENST000005231870
1659765.48MGLL'protein_coding'1429AEGain36.636EU AB CE E8a_E9b66.67
1669805.48PVT1'lincRNA'2052AEGain10.8322EU ES AB CE I15_AR845.45
1679895.47BAZ2B'protein_coding'1562AEGain7.9815EU ES AB IR CE I6_AR450.00
1689905.47SHOX2'protein_coding'720DEGain44.360N/ASHOX2N/A
16910025.46MLLT10'protein_coding'1753AEGain8.035EU ES AB E25a_E27a0.00
17010075.46C12orf51'protein_coding'477AEGain7.4412EU AB E13_Da60.00
17110125.45MED24'protein_coding'1350AEGain10.001ES E1a_E3a0
17210225.44KIAA1370'protein_coding'215AEGain10.698ES CE E8a_E11a0.00
17310355.43PRKCQ'protein_coding'322AEGain8.003EU ES E17a_E19a0.00
17410395.42LNP1'protein_coding'310AEGain32.894EU AB CE E2_Aa0
17510415.42CHD6'protein_coding'957AEGain7.925EU ES E5b_E7a0.00
17610485.42CEP135'protein_coding'534AEGain12.139EU AB E7_Da33.33
17710525.41ZNF224'protein_coding'16AEGain7.571AB E6_Aa0
17810575.41GIGYF2'protein_coding'48123AEGain11.0417EU ES AB E10_Da50.00
17910765.39SLC6A6'protein_coding'1233AEGain10.287EU ES AB E8_Da0.00
18010955.37INTS6'protein_coding'2566AEGain10.9018EU ES AB IR E24_De0.00
18110965.37C1orf63'protein_coding'718AEGain2.6116EU AB ENST0000024318963.64
18211045.37RBM41'protein_coding'1027AEGain6.335ES AB E5a_E9b100.00
18311095.36XKR4'protein_coding'13AEGain10.003CE I2_AR10
18411105.36SNHG7'processed_transcript'410AEGain8.689EU AB IR Ix0
18511175.36CLCN6'protein_coding'1935AEGain9.4418EU ES AB IR CE I4_AR130.00
18611185.36ARHGAP11B'protein_coding'213AEGain8.144EU AB E8_Da0
18711235.35SMPDL3B'protein_coding'619AEGain6.354EU AB E10_Db0.00
18811255.35NCOR1'protein_coding'1876AEGain10.8713EU ES ER19b41.67
18911385.34LONP2'protein_coding'217AEGain8.773EU ES E2a_E4a0.00
19011485.33CEP250'protein_coding'1866AEGain6.5217EU ES AB IR E14a_E16a27.27
19111525.32ANKRD17'protein_coding'1063AEGain9.124EU ES AB E31_Ab0.00
19211595.31POLK'protein_coding'2044AEGain7.967EU AB E17_Dd50.00
19311655.31TMEM67'protein_coding'2575AEGain8.1923EU ES AB E3_Db26.67
19411775.30THSD1P1'processed_transcript'438AEGain8.114EU AB ER23a0.00
19511815.29LCOR'protein_coding'720AEGain7.823EU ES AB E5a_E10a0.00
19611895.28WBSCR22'protein_coding'2145AEGain7.7220EU ES AB ER11c41.67
19711915.28ELMOD3'protein_coding'2558AEGain7.6728EU AB E11_Ab42.86
19811925.28SETBP1'protein_coding'410AEGain7.454EU ES CE I6_AR40.00
19911955.28IGHV2-70'IG_V_gene'12AEGain4.804EU IR I1_SR1100.00
20011995.27C14orf49'protein_coding'117AEGain7.643EU ES E1a_E3a50.00
20112035.27ZNF440'protein_coding'411AEGain8.973EU AB E2_Da0
20212045.27MIB2'protein_coding'3785AEGain6.8020EU ES AB ER14c22.22
20312095.27RPTOR'protein_coding'134AEGain8.104EU ES E2a_E4a33.33
20412195.26ZCCHC8'protein_coding'114AEGain8.643EU ES E5a_E6a50.00
20512205.25NOTCH2'protein_coding'746AEGain7.883EU ES E17a_E19a0.00
20612225.25MLL5'protein_coding'1964AEGain7.025ES AB E3a_E17a0.00
20712265.25AC139099.1'lincRNA'12AEGain7.261AB E2_Aa0
20812335.25ZNFX1'protein_coding'828AEGain7.245AB CE E15_Da0
20912355.25MLL'protein_coding'745AEGain10.485ES AB CE I2_AR90.00
21012425.24NVL'protein_coding'2563AEGain8.035EU AB E20_Da0.00
21112465.24AL442003.2'lincRNA'14AEGain8.844IR I1_AR10
21212475.24ZC3H12C'protein_coding'27AEGain8.641AB E3_Da0
21312495.23TMEM63B'protein_coding'730AEGain5.679EU AB E7a_E8a20.00
21412505.23NAPB'protein_coding'719AEGain8.148EU ES AB E5_Da25.00
21512515.23ZNF274'protein_coding'312AEGain7.623ES AB E1a_E3a0.00
21612575.23PKNOX1'protein_coding'418AEGain20.217EU AB E10_Da0.00
21712595.22OTUD5'protein_coding'827AEGain8.154EU IR E2b_E3a0.00
21812725.21EHBP1'protein_coding'2163AEGain8.559EU ES AB E20_Db20.00
21912755.21CLK4'protein_coding'1341AEGain6.3515EU ES AB E12_Db50.00
22012825.20GAN'protein_coding'111AEGain10.752EU E6a_E7a0.00
22112855.20ZNF510'protein_coding'513AEGain8.811AB E3_Da0
22212875.20GON4L'protein_coding'2477AEGain8.3313EU ES AB E13a_E15b50.00
22312895.20C15orf40'protein_coding'821AEGain6.347EU ES AB E7_Aa100.00
22412925.20SIPA1L2'protein_coding'631AEGain11.015EU AB E17_Aa0.00
22512945.19RP11-110G21.1'processed_transcript'59AEGain7.232EU ES E1a_E3a0.00
22612985.19HDAC9'protein_coding'2878AEGain9.4315EU ES AB E13_Da27.27
22713065.18FAM188A'protein_coding'826AEGain6.829EU ES AB CE E11a_E15a33.33
22813095.18AL592307.2'protein_coding'1889AEGain3.3010EU ES AB ER69a0.00
22913135.18GNAQ'protein_coding'29AEGain9.831ES E4a_E7a0
23013225.17PTGS1'protein_coding'419AEGain7.242EU ES E1b_E3a0.00
23113285.17R3HDM1'protein_coding'2367AEGain8.663EU ES AB E27a_E30b0.00
23213385.16CA11'protein_coding'19AEGain5.345EU AB E8_Aa33.33
23313405.16MRPS22'protein_coding'1542AEGain10.356EU ES AB E8b_E10c33.33
23413465.15ZBTB5'protein_coding'12AEGain8.121AB E2_Aa0
23513475.15SDCCAG1'protein_coding'235AEGain9.899EU ES AB CE E29a_E31a20.00
23613605.14FANCM'protein_coding'123AEGain9.969EU AB E17_Aa0.00
23713665.14ZNF557'protein_coding'310AEGain6.341AB E2_Da0
23813735.13TBC1D16'protein_coding'215AEGain9.109EU ES AB CE I8_AR160.00
23913755.13RASEF'protein_coding'219DEGain34.970N/ARASEFN/A
24013775.13LMO7'protein_coding'1353AEGain8.2510EU AB E12_Aa0.00
24113855.12GCC2'protein_coding'1653AEGain6.677EU AB CE I23_AR166.67
24213955.11ERP27'protein_coding'17AEGain7.332EU AB E3_Da0
24313975.11GBF1'protein_coding'242AEGain8.535ES IR E6a_E8a0.00
24413985.11ANKRD44'protein_coding'1651AEGain8.7018EU ES AB IR CE E14a_E15b0.00
24514025.11TMTC4'protein_coding'1239AEGain7.2415EU ES AB CE E14_Aa25.00
24614055.11CLP1'protein_coding'24AEGain8.531EU E2a_E3a0
24714115.10PHC3'protein_coding'2051AEGain6.655EU ES AB E8a_E10a50.00
24814175.10WHSC2'protein_coding'1540AEGain7.245EU ES AB ENST000004116490.00
24914205.09TBXAS1'protein_coding'2357AEGain9.071ES E22a_E25a0
25014225.09PWWP2A'protein_coding'618AEGain5.253EU ES AB ENST00000523662100.00
25114255.09AAGAB'protein_coding'110AEGain9.751ES E8a_E10a0


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1112.67CTSG'protein_coding'15DELoss-6504.700N/ACTSGN/A
2211.80LMO4'protein_coding'411AELoss-374.1611EU AB IR E2_Da100.00
3311.28SAMSN1'protein_coding'618AELoss-71.021ES E7b_E9a0
4411.11GNL3'protein_coding'1437AELoss-161.5515EU ES AB E2d_E3a60.00
5610.58ISCA1'protein_coding'512AELoss-45.944EU ES AB E5_Da100.00
6710.50IGHV5-78'IG_V_pseudogene'11DELoss-1446.380N/AIGHV5-78N/A
7910.19CNOT8'protein_coding'2560AELoss-42.0211EU AB E3_Ab60.00
81010.08HBB'protein_coding'411DELoss-1083.640N/AHBBN/A
91110.05MLLT3'protein_coding'1028AELoss-27.5711EU ES AB E8a_E10a100.00
101210.03NET1'protein_coding'722AELoss-47.521AB E12_Aa0
11139.98HHLA2'protein_coding'1029AELoss-13.2116EU ES AB E1_Da58.33
12149.87ANTXR2'protein_coding'1142AELoss-73.8411EU ES AB E6a_E9a28.57
13159.65TIAL1'protein_coding'1445AELoss-81.8713EU AB E14_Dd62.50
14169.64HLA-DPB1'protein_coding'1022AELoss-53.061EU E2a_E2d0
15179.58C4orf43'protein_coding'921AELoss-20.905EU AB E2_Da50.00
16189.54CD46'protein_coding'2736AELoss-111.7113EU AB E5_Ad57.14
17199.47FAM69B'protein_coding'26AELoss-34.632AB IR E2_Aa0
18209.46LSM5'protein_coding'1021AELoss-28.023EU ES AB E1_Da100.00
19219.45MTCH2'protein_coding'113AELoss-57.523EU ES AB E9_Da0.00
20229.37YY1'protein_coding'15AELoss-64.031AB E4_Aa0
21239.35CLDND1'protein_coding'3568AELoss-43.584EU AB E4_Db0
22249.28CD36'protein_coding'2050AELoss-18.057EU AB E17_Aa0.00
23259.27PFKL'protein_coding'1243AELoss-65.002EU AB ER13d0
24269.16PARP9'protein_coding'824AELoss-48.9710EU AB E4_Db25.00
25279.15DCTN4'protein_coding'1541AELoss-34.616EU ES AB E8_Aa33.33
26289.13POLR2H'protein_coding'1433AELoss-47.3710EU ES AB E4_Ac20.00
27299.10CACNA2D2'protein_coding'1053AELoss-34.4020EU ES AB E37_Da56.25
28309.09STK38'protein_coding'217AELoss-74.714EU AB E10_Aa100.00
29319.03ARFGAP2'protein_coding'522AELoss-157.503AB CE E12_Aa0
30328.87RP11-439E19.3'processed_transcript'515AELoss-28.0816EU AB IR E1b_E2a33.33
31338.87PHF11'protein_coding'1944AELoss-59.8720EU ES AB IR E8_Aa44.44
32348.84PTPRC'protein_coding'1854AELoss-142.636EU ES E4a_E9a60.00
33358.84TSNAX'protein_coding'616AELoss-47.312EU AB E3_Ab0
34368.82TGOLN2'protein_coding'615AELoss-152.717EU AB CE E4_Ac0.00
35378.80XPO1'protein_coding'2678AELoss-53.4217EU ES AB E8d_E8e30.00
36388.79STAT5B'protein_coding'730AELoss-55.354EU ES AB E10_Ac0.00
37398.73PTMA'protein_coding'1439AELoss-66.579EU ES AB ENST0000041006440.00
38408.70ARPC5L'protein_coding'310AELoss-34.9312EU AB IR CE E3_Da0
39418.67UHRF2'protein_coding'1342AELoss-78.1117EU ES AB E15_Ab66.67
40428.65HBA1'protein_coding'48DELoss-401.610N/AHBA1N/A
41438.63LILRB4'protein_coding'1339AELoss-19.764EU AB E14_Ac100.00
42448.62DPYD'protein_coding'735AELoss-38.102ES AB E3_Da0
43458.62TTF2'protein_coding'841AELoss-46.057EU ES AB E14_Aa0.00
44468.61FUBP1'protein_coding'1746AELoss-47.328EU AB IR ER20c0.00
45478.60SFRS6'protein_coding'39AELoss-29.715EU AB E2a_E3a66.67
46488.60NIT2'protein_coding'723AELoss-26.376EU AB E5_Ab0.00
47498.53MARCH6'protein_coding'1454AELoss-84.128EU AB E14_Ab75.00
48508.52HMGN1'protein_coding'2146AELoss-41.9919EU AB ER4k53.33
49518.49STAT3'protein_coding'942AELoss-48.691AB E20_Ad0
50528.46ILF2'protein_coding'420AELoss-44.211ES E9a_E11a0
51538.45TEX261'protein_coding'821AELoss-49.102EU ER5c0.00
52548.44RP11-1280I22.1'protein_coding'1122AELoss-1020.2622EU AB E1_Da76.47
53558.43THOC2'protein_coding'2387AELoss-46.5011EU ES AB ER31f42.86
54568.42C19orf61'protein_coding'114AELoss-43.441AB E9_Da0
55578.40IDH3B'protein_coding'1441AELoss-70.453EU AB E6_Ab100.00
56588.34TMEM41A'protein_coding'720AELoss-35.5811EU ES AB E7_Aa0.00
57598.33SFRS11'protein_coding'2052AELoss-67.1440EU ES AB IR E5_Af73.68
58608.32AP2A2'protein_coding'635AELoss-27.421AB E18_Aa0
59618.31PITPNB'protein_coding'1337AELoss-35.044EU ES AB E4a_E7c0.00
60628.31WDR6'protein_coding'2149AELoss-172.449EU AB E6_Dp25.00
61638.30PHPT1'protein_coding'718AELoss-41.652EU AB E3_Da0
62648.28CD47'protein_coding'722AELoss-33.1715EU AB IR E8_Aa50.00
63668.26HBA2'protein_coding'48DELoss-305.760N/AHBA2N/A
64678.23C17orf85'protein_coding'315AELoss-47.527EU ES AB IR E8_Da75.00
65688.19NUP188'protein_coding'1369AELoss-40.452EU AB E25_Aa0
66698.16CTAGE5'protein_coding'736AELoss-152.606EU ES ENST0000034174940.00
67708.16AJ006998.2'processed_transcript'17DELoss-285.770N/AAJ006998.2N/A
68718.15CPEB3'protein_coding'314AELoss-180.715EU AB E3_Aa0.00
69728.14DDX17'protein_coding'1640AELoss-150.4918EU ES AB ER14c63.64
70738.14KAT2A'protein_coding'221AELoss-58.923EU AB E6b_E7a100.00
71748.11DGKA'protein_coding'731AELoss-40.614EU ES AB E15_Aa0.00
72758.11C15orf29'protein_coding'110AELoss-27.812AB E8_Da0
73768.09COPS5'protein_coding'1340AELoss-33.2712EU ES AB E11_Da22.22
74778.06DDX3X'protein_coding'629AELoss-39.193ES E16a_E19a0.00
75788.03HOXA7'protein_coding'37DELoss-262.280N/AHOXA7N/A
76798.03TADA3'protein_coding'621AELoss-23.051CE I5_AR10
77808.03NOL11'protein_coding'118AELoss-34.034EU ES AB E9a_E11a0.00
78818.01HOXA9'protein_coding'925DELoss-258.580N/AHOXA9N/A
79828.01AC009113.2'protein_coding'110DELoss-257.200N/AAC009113.2N/A
80838.00KIAA1967'protein_coding'1447AELoss-40.298EU ES AB E13_Aa0.00
81848.00SRP54'protein_coding'116AELoss-89.972ES AB E14_Aa0
82857.96MINA'protein_coding'1132AELoss-29.4910EU AB CE ER7a60.00
83867.95FAF2'protein_coding'623AELoss-33.472AB E6_Db0
84877.94KIAA0406'protein_coding'618AELoss-38.824EU ES AB E5_Aa50.00
85887.93GBP5'protein_coding'723AELoss-14.096EU AB E1_Af100.00
86897.92AZU1'protein_coding'27DELoss-242.220N/AAZU1N/A
87907.91CLC'protein_coding'14DELoss-240.840N/ACLCN/A
88917.91TMEM165'protein_coding'1128AELoss-99.2926EU AB IR CE E8_Ad37.50
89927.87EPX'protein_coding'113DELoss-234.380N/AEPXN/A
90937.86RP11-439E19.8'protein_coding'214AELoss-7.849EU ES AB E7_Da33.33
91947.85ITGA4'protein_coding'1250AELoss-59.686EU ES E13a_E15c60.00
92957.83GPM6B'protein_coding'1128AELoss-24.906EU ES AB ER14b0.00
93967.83NGFRAP1'protein_coding'511DELoss-226.860N/ANGFRAP1N/A
94977.82B4GALT6'protein_coding'311AELoss-27.521AB E3_Aa0
95987.81NBN'protein_coding'1138AELoss-27.871AB E5_Da0
96997.80IGHV3-43'IG_V_gene'12AELoss-21.471EU ER1a0
971007.80LPAR5'protein_coding'35AELoss-50.262EU ES E1a_E3a100.00
981027.78KCNN4'protein_coding'211AELoss-31.553EU AB E1_Da0
991037.78AC068580.3'protein_coding'49AELoss-34.0010EU AB IR CE E1_Da33.33
1001047.77DNAJB6'protein_coding'2257AELoss-25.0616EU ES AB CE E10a_E10c20.00
1011057.76PRTN3'protein_coding'15DELoss-217.311EU PRTN30
1021067.75ZNF259'protein_coding'827AELoss-30.843EU AB E7_Aa0
1031077.75PABPC1'protein_coding'2468AELoss-20.914EU AB ENST00000517921100.00
1041087.75AC004410.1'protein_coding'427AELoss-93.815EU AB E11_Dc100.00
1051097.74MLF1IP'protein_coding'623AELoss-22.482ES AB E13_Aa0
1061107.72HK1'protein_coding'2460AELoss-133.218EU ES AB E10_Ab75.00
1071117.71ADPGK'protein_coding'514AELoss-76.133ES AB E5_Aa0.00
1081127.70RMND5A'protein_coding'415AELoss-20.581AB E7_Aa0
1091137.67CREB1'protein_coding'1743AELoss-28.057EU ES AB E1_Dc0.00
1101147.66PSME4'protein_coding'1269AELoss-30.154EU AB E43_Aa0
1111157.66MAT2A'protein_coding'1029AELoss-26.4523EU ES AB E3b_E3e18.18
1121167.65PPTC7'protein_coding'16AELoss-26.912AB E4_Da0
1131177.64RDH11'protein_coding'29AELoss-84.341AB E2_Da0
1141187.62UBA7'protein_coding'1143AELoss-128.6520EU ES AB E8_Dc25.00
1151197.62UBE2J2'protein_coding'2249AELoss-31.669EU ES AB E7_Db25.00
1161207.61EEF1D'protein_coding'916AELoss-25.154EU ES E4a_E5b33.33
1171217.61C17orf28'protein_coding'323DELoss-195.810N/AC17orf28N/A
1181227.60ADRM1'protein_coding'620AELoss-14.045EU ES AB IR E2a_E5a0.00
1191237.60SSBP1'protein_coding'1433AELoss-22.316EU CE E1d_E2a0.00
1201247.59THRAP3'protein_coding'522AELoss-25.951ES E3a_E5a0
1211257.57SFXN3'protein_coding'927AELoss-63.7910EU AB ER9d40.00
1221267.56MED12L'protein_coding'958AELoss-14.2031EU AB E6a_E7a52.17
1231277.56UNC45A'protein_coding'1244AELoss-83.665EU AB E7a_E7b33.33
1241287.55GGA2'protein_coding'117AELoss-31.062AB E3_Da0
1251297.54RIOK3'protein_coding'316AELoss-28.853EU AB E11_Aa0.00
1261307.53AC107016.2'protein_coding'29DELoss-185.380N/AAC107016.2N/A
1271317.53APIP'protein_coding'310AELoss-13.972EU ES ER2a100.00
1281327.53SFT2D1'protein_coding'619AELoss-31.535EU AB CE E6_Da0.00
1291337.52TBC1D10B'protein_coding'824AELoss-31.762EU AB E2_Aa0
1301357.51SERPINB9'protein_coding'17AELoss-23.362EU AB E4_Da0
1311377.49LOXL3'protein_coding'1032AELoss-16.955EU ES AB E3_Aa0.00
1321387.48NT5C3'protein_coding'1231AELoss-31.0510EU ES AB E2a_E3a71.43
1331397.46ECD'protein_coding'724AELoss-24.945EU AB E6_Aa0.00
1341407.46TOP3A'protein_coding'835AELoss-31.298EU AB E5_Aa33.33
1351417.45CDC7'protein_coding'721AELoss-17.227EU AB E1_Da100.00
1361437.44SULT1A1'protein_coding'718AELoss-31.2618EU ES AB E2_Da84.62
1371447.44PPP3CB'protein_coding'826AELoss-21.372EU AB E13_Aa0
1381457.43ACSL4'protein_coding'1240AELoss-28.637EU ES AB E5_Ab33.33
1391477.41DTYMK'protein_coding'822AELoss-19.238EU AB E7_Da0.00
1401487.40RNASET2'protein_coding'1650AELoss-63.7224EU ES AB ER12c50.00
1411497.39TBRG1'protein_coding'720AELoss-54.1815EU ES AB IR E5_Da25.00
1421507.38TAPT1'protein_coding'1962AELoss-64.6317EU ES AB E18_Aa30.00
1431517.37LMAN1'protein_coding'113AELoss-91.592EU CE I5_AR40
1441527.36HBG1'protein_coding'37DELoss-164.290N/AHBG1N/A
1451537.35ZNF273'protein_coding'721AELoss-85.477EU ES AB E6_Aa50.00
1461547.35KIAA1147'protein_coding'212AELoss-26.783AB E10_Aa0
1471557.35MYO1F'protein_coding'335AELoss-72.761AB E8_Da0
1481567.35GLMN'protein_coding'627AELoss-18.486EU AB CE E17_Aa0.00
1491577.33ACSS1'protein_coding'519AELoss-29.114ES AB E13_Aa0.00
1501587.31CELF2'protein_coding'1026AELoss-18.522ES AB E15a_E16b0
1511597.31AP1G1'protein_coding'634AELoss-27.1311EU ES AB E19_Aa20.00
1521607.31SLC30A5'protein_coding'1035AELoss-16.185EU AB E9_Da100.00
1531647.29FAM116B'protein_coding'734AELoss-16.207EU AB ER6d20.00
1541657.29NR3C1'protein_coding'1939AELoss-18.106EU ES AB E18_Da0.00
1551667.29ATP6AP1'protein_coding'1130AELoss-27.383EU AB E1_Db0.00
1561687.27CD9'protein_coding'616DELoss-56.446EU ES AB CD933.33
1571697.27AK3'protein_coding'616AELoss-67.096EU AB ER5a0.00
1581707.25LRCH3'protein_coding'1958AELoss-92.9811EU ES AB E22_Aa20.00
1591717.25EXOC3'protein_coding'1139AELoss-47.1931EU ES AB IR E9_Ab72.22
1601747.24EIF4G3'protein_coding'1663AELoss-23.952ES E12a_E15b0.00
1611757.24EIF5'protein_coding'213AELoss-63.3210ES AB IR CE E6_Aa0
1621767.22IVNS1ABP'protein_coding'1031AELoss-30.908EU AB E10_Aa75.00
1631777.21COMMD3'protein_coding'2040AELoss-38.777EU AB ER4m50.00
1641787.21COX17'protein_coding'718AELoss-17.404EU ES AB E6_Da0.00
1651807.21LIMS1'protein_coding'1534AELoss-13.977EU ES AB ENST0000047403820.00
1661827.20HGSNAT'protein_coding'1343AELoss-30.1312EU AB IR ENST0000052067866.67
1671837.20SIVA1'protein_coding'24AELoss-22.501AB E3_Da0
1681847.19VPRBP'protein_coding'536AELoss-25.037EU ES IR E3a_E5a25.00
1691857.19FAM104A'protein_coding'37AELoss-14.313EU ES AB E1a_E4a100.00
1701867.18RUFY1'protein_coding'1651AELoss-21.7513EU AB E18_Aa42.86
1711877.17RIPK1'protein_coding'519AELoss-29.954EU AB E6_Da0.00
1721887.17HS2ST1'protein_coding'1131AELoss-18.6618EU ES AB ER11b50.00
1731897.16ARID5A'protein_coding'820AELoss-25.423EU AB E2_Da0
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