Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PIN4	Gene	0	36.81	30.71	36.81	98.65	131.87	71.49	157.81	88.08	123.50	31.50	37.16	46.16	61.89	38.25	121.25	69.79	39.08	34.54	49.90	55.54	43.77	62.08	55.35	40.05	52.69	140.09	89.58	188.52	108.14
2	373662	Transcript	0	5.07	0.75	3.29	1.77	2.80	2.02	3.12	2.10	2.90	1.22	1.68	2.72	1.54	0.85	3.06	7.33	3.59	1.12	1.09	1.34	3.14	1.10	1.41	2.84	1.22	4.06	2.08	3.56	4.07
3	218432	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	373669	Transcript	0	0.00	0.00	0.00	0.00	1.42	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.77
5	423432	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	475071	Transcript	1	19.14	20.41	5.85	6.79	22.42	17.28	41.18	32.35	24.96	24.75	19.81	25.27	43.61	22.55	61.61	21.87	25.40	15.99	19.07	11.84	12.74	16.10	29.45	21.05	18.17	87.11	80.98	140.07	57.43
7	446576	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	439980	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	496835	Transcript	0	0.33	0.36	0.00	1.11	0.00	1.62	2.80	0.85	2.78	1.34	2.02	0.37	0.00	3.05	0.85	1.15	1.71	1.84	4.94	5.99	0.57	0.28	0.84	1.48	3.94	0.49	0.28	7.22	0.00
10	ER1a	ExonRegion	0	0.56	0.00	0.34	0.68	2.29	0.13	0.48	1.27	0.11	0.72	0.57	0.20	0.97	0.03	1.95	1.49	0.01	0.00	0.00	0.00	0.06	0.03	1.99	0.15	0.16	0.80	0.59	0.34	0.22
11	E1_Ab	KnownBoundary	0	11.56	0.00	2.44	10.78	12.08	3.30	12.19	7.27	2.62	8.79	9.30	4.91	12.36	0.00	15.75	12.09	0.00	0.00	0.00	0.00	1.72	0.00	19.95	4.96	3.33	11.29	15.65	9.12	1.55
12	ER1b	ExonRegion	0	5.46	1.16	5.83	9.89	35.36	11.02	20.59	11.41	8.02	9.20	12.41	13.10	22.97	3.82	47.11	13.30	1.55	7.49	11.63	0.00	4.81	6.72	24.07	3.33	4.04	29.12	23.16	31.74	10.21
13	E1_Ac	KnownBoundary	0	0.00	4.56	8.37	0.00	20.34	16.88	19.17	16.22	4.35	4.71	4.18	12.05	23.53	3.46	42.85	0.00	2.16	28.51	40.46	0.00	12.03	1.99	17.58	0.00	3.52	18.24	24.75	42.15	16.94
14	ER1c	ExonRegion	0	131.65	53.05	144.21	601.93	896.23	169.54	733.97	211.42	370.07	161.10	234.49	204.16	306.00	82.70	314.97	284.69	108.56	95.56	71.13	78.41	103.76	147.29	317.39	86.72	144.13	569.80	577.86	970.21	435.22
15	E1_Ad	KnownBoundary	0	0.00	10.28	23.47	7.55	46.86	2.76	4.98	3.58	2.19	151.11	269.53	7.59	226.54	3.52	48.83	16.29	0.00	22.99	31.47	0.00	0.00	0.00	10.59	3.05	1.36	1.54	3.58	47.99	5.91
16	E1_Ae	KnownBoundary	0	138.03	19.20	317.96	366.03	361.50	346.15	908.69	175.57	1049.67	89.68	89.68	262.37	295.74	175.33	184.97	252.37	347.39	14.26	16.18	54.83	203.92	157.28	258.61	62.27	123.43	397.47	135.18	474.66	850.13
17	ER1d	ExonRegion	0	404.04	248.01	426.95	1930.54	2714.94	811.06	2508.60	639.78	1343.73	389.82	611.72	576.39	757.97	330.62	1111.72	956.62	322.55	390.27	386.96	333.06	466.43	549.84	929.45	344.18	603.89	2032.12	1644.72	2824.04	1516.65
18	ER1e	ExonRegion	0	446.04	336.70	561.32	1966.65	2614.38	1101.28	2693.48	972.09	1690.69	383.19	517.85	624.16	815.01	454.83	1502.36	1103.08	383.82	542.25	627.53	538.95	732.81	802.84	955.38	407.04	816.24	2363.53	1578.84	2971.87	1748.34
19	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	1.53	2.59	0.00	0.00	4.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	1.89	0.00	5.93	0.00
20	E1a_E2a	KnownJunction	0	5.31	0.00	5.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	6.66	3.62	0.00	0.00	0.00	2.05	0.00	0.00	2.63	0.00	0.00	0.00	0.00	3.20
21	E1a_E2b	KnownJunction	0	295.22	397.21	654.02	1276.90	1653.80	1088.60	1867.72	1017.51	1919.21	262.08	318.37	520.92	732.13	504.40	1698.20	862.06	455.75	293.98	307.51	598.16	773.41	768.45	505.10	374.74	805.17	2020.01	911.75	2416.55	1759.16
22	E1a_E3a	NovelJunction	0	54.50	0.00	48.78	0.00	7.37	0.00	2.92	0.00	0.00	26.20	42.61	117.98	102.41	1.13	8.37	94.17	75.34	0.00	0.00	0.00	31.61	0.00	0.00	91.40	8.60	153.29	55.16	0.00	151.99
23	ER1f	ExonRegion	0	0.11	0.14	0.00	0.00	0.31	0.50	0.54	0.51	1.61	0.73	0.05	1.70	0.08	0.04	0.06	0.05	1.83	0.23	0.47	0.00	0.31	0.19	0.09	0.11	0.43	1.28	0.04	0.87	0.68
24	E1_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	1.84	0.00	1.26	0.00	3.67	5.13	0.00	0.00	0.00	0.00	2.19	2.12	0.00	0.00	0.00	0.00	1.89	1.62
25	E1b_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	1.42
26	I1	Intron	0	0.87	0.77	0.92	0.17	0.00	0.59	0.29	0.26	1.17	1.77	0.54	1.90	0.62	0.79	1.88	4.27	7.26	0.14	0.69	0.13	1.09	0.17	0.09	2.06	0.65	1.58	1.71	0.66	1.65
27	I1_AR1	ActiveIntronRegion	0	0.92	0.90	0.99	0.00	0.00	0.40	0.52	0.38	1.55	1.90	0.32	2.19	0.87	0.89	2.99	5.41	9.48	0.20	1.15	0.00	1.38	0.18	0.00	1.58	0.66	1.51	1.70	0.68	1.59
28	I1_SR2	SilentIntronRegion	0	0.95	0.76	0.99	0.48	0.00	0.82	0.13	0.00	0.87	1.76	0.88	2.02	0.59	0.82	1.34	3.25	5.95	0.13	0.42	0.37	1.03	0.24	0.24	3.17	0.85	1.61	2.30	0.43	2.10
29	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	8.20	0.00	1.57	0.00	0.00	1.31	3.44	0.00	2.83	0.00	0.00	0.00	3.14	7.97	0.00	0.00	0.00	3.45	0.00	0.00	2.99	0.00	3.60	0.00	0.00	4.16
30	ER2a	ExonRegion	0	9.33	2.26	3.70	4.62	6.10	5.94	8.89	5.05	8.58	2.93	4.48	6.73	3.65	2.52	7.22	13.84	7.14	3.36	3.26	4.02	7.33	3.27	2.24	5.75	3.51	11.37	5.64	10.35	8.79
31	E2_Ab	KnownBoundary	0	5.01	0.00	2.64	0.00	0.00	0.00	0.00	0.00	0.00	3.95	0.00	4.67	0.00	0.00	0.00	9.33	11.01	0.00	0.00	0.00	3.97	0.00	0.00	6.10	1.74	2.19	0.00	0.00	1.68
32	ER2b	ExonRegion	0	147.05	156.10	260.60	248.93	352.26	510.46	787.80	672.50	910.42	122.48	108.92	192.95	332.74	199.12	464.47	195.56	225.46	98.10	153.13	181.08	335.75	341.78	187.96	156.39	265.07	809.22	229.27	908.33	587.37
33	E2_Da	NovelBoundary	0	0.00	0.00	1.45	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	1.39	0.00	2.13	0.00	3.52	4.41	0.00	0.00	3.14	1.72	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00
34	E2a_E3a	KnownJunction	0	144.16	73.10	15.12	28.69	49.07	106.05	221.59	297.10	184.91	54.77	73.99	91.02	132.12	154.81	391.86	70.07	86.71	37.63	129.48	100.89	47.49	243.77	95.64	177.23	61.83	174.79	137.02	248.56	130.30
35	E3_Aa	NovelBoundary	0	2.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	4.07	0.00	0.00	0.00	0.00	0.00	6.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER3a	ExonRegion	0	382.96	267.70	12.63	99.91	36.91	754.60	1444.95	963.17	1363.94	208.43	228.67	302.93	446.75	358.04	801.60	539.87	271.85	245.78	318.53	528.01	429.38	761.92	349.07	354.97	487.26	919.93	262.79	889.06	802.62
37	E3_Ab	KnownBoundary	0	480.85	501.14	19.13	124.45	81.94	1537.77	4292.71	1382.15	2986.72	419.83	513.81	624.39	819.07	505.19	2210.65	1510.70	485.43	924.57	913.32	769.35	1047.24	954.84	912.35	503.35	1144.25	2399.89	782.59	2902.26	1922.44
38	ER3b	ExonRegion	0	351.88	353.70	43.30	131.63	145.89	818.72	2194.70	959.58	1425.54	416.90	479.49	561.87	889.56	391.51	1546.68	757.67	381.19	478.61	761.54	405.83	543.31	506.39	901.69	427.68	677.91	2291.34	1501.48	3255.12	1590.03
39	E3_Da	KnownBoundary	1	3.01	0.00	0.00	0.00	20.78	1.84	5.15	2.54	1.58	0.00	3.07	1.87	0.00	4.30	16.34	21.65	9.07	4.62	0.00	0.00	0.00	2.48	0.00	10.47	5.30	0.00	2.53	19.37	0.00
40	E3a_E3c	KnownJunction	1	166.81	163.56	83.86	177.30	215.90	81.45	381.85	332.98	236.80	183.11	217.27	279.45	325.70	189.86	532.58	224.06	247.87	111.22	194.22	178.13	111.39	201.28	317.81	269.71	139.38	648.09	924.72	1120.14	462.72
41	E3a_E4a	KnownJunction	1	3.01	3.49	0.00	0.00	0.00	0.00	5.09	1.99	0.00	1.92	9.11	0.00	0.00	4.70	0.00	0.00	6.42	4.62	0.00	3.14	1.68	0.00	0.00	0.00	0.00	0.00	0.00	27.77	1.85
42	E3_Db	KnownBoundary	0	0.00	8.92	0.00	21.57	13.71	13.89	2.35	0.00	5.63	3.67	1.61	2.65	0.00	3.01	15.35	10.33	4.68	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.87	4.09	0.00
43	ER3c	ExonRegion	1	2.95	2.60	0.23	15.84	21.38	7.50	7.14	2.84	3.93	2.47	3.52	5.31	4.76	4.46	21.47	17.93	10.69	6.25	0.38	0.12	0.65	2.03	1.88	4.39	4.41	7.33	8.09	33.01	5.93
44	ER3d	ExonRegion	0	9.75	11.51	0.99	11.16	4.95	10.79	3.69	2.78	3.77	3.41	0.63	4.77	0.00	7.70	18.19	23.32	8.42	9.81	8.66	14.05	1.57	2.65	1.60	3.63	3.35	1.39	0.89	2.78	2.36
45	E3_Dc	KnownBoundary	0	8.67	0.00	0.00	9.92	7.37	8.75	8.41	0.00	11.36	4.91	1.36	0.00	0.00	11.23	33.88	23.26	15.82	4.88	8.09	17.70	3.61	0.00	0.00	5.44	0.00	0.00	0.00	2.07	0.00
46	ER3e	ExonRegion	0	13.07	6.04	0.00	6.79	4.65	9.16	3.08	3.36	5.21	7.88	1.66	1.89	2.13	8.60	25.57	23.05	14.73	9.38	7.23	6.52	2.89	2.55	0.73	7.06	3.19	2.01	1.48	7.14	2.62
47	E3_Dd	KnownBoundary	0	3.01	8.63	0.00	0.00	0.00	1.65	0.00	5.08	0.00	3.79	0.00	0.00	4.39	5.18	17.74	3.82	7.70	0.00	0.00	0.00	2.97	0.00	0.00	0.00	0.00	0.00	0.00	6.29	2.71
48	E3_Ac	KnownBoundary	0	5.49	4.85	0.00	0.00	7.37	3.84	2.52	0.00	2.83	9.67	4.43	1.42	1.97	4.28	7.57	3.21	2.79	5.39	0.00	0.00	0.00	0.00	0.00	0.00	1.93	4.21	0.00	0.00	1.62
49	ER3f	ExonRegion	1	19.14	20.41	5.85	6.79	22.42	17.28	41.18	32.35	24.96	24.75	19.81	25.27	43.61	22.55	61.61	21.87	25.40	15.99	19.07	11.84	12.74	16.10	29.45	21.05	18.17	87.11	80.98	140.07	57.43
50	ER3g	ExonRegion	0	24.60	26.74	74.04	190.05	257.59	22.47	49.08	49.69	42.14	23.16	28.60	39.32	35.44	31.15	121.17	50.55	37.63	26.73	52.43	76.12	11.61	47.51	24.45	43.05	30.23	52.71	67.57	94.97	51.05
51	E3_De	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	6.37	6.98	2.04	20.86	0.00	5.92	10.09	1.88	6.58	45.44	3.21	4.64	0.00	0.00	26.22	1.60	2.38	0.00	13.28	3.75	4.38	12.18	17.48	2.71
52	ER3h	ExonRegion	0	1.29	5.20	0.33	2.93	2.89	5.00	2.54	1.73	6.46	1.47	2.29	5.22	0.14	3.21	20.73	6.44	5.36	2.31	5.13	11.49	1.06	0.59	1.08	5.74	1.35	2.50	5.12	7.68	5.36
53	E3_Df	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	1.96	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
54	E3_Dg	NovelBoundary	0	0.00	9.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.91	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER3i	ExonRegion	0	0.00	0.00	0.00	0.00	1.42	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.77
56	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
57	ER4a	ExonRegion	1	0.60	0.95	0.95	0.16	2.77	4.17	3.20	0.86	1.22	1.35	5.06	0.76	0.00	5.39	2.92	1.35	4.37	0.76	3.47	3.75	0.52	0.00	3.07	1.96	1.79	2.69	0.06	22.15	2.31
58	E4_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	5.42	0.00	0.00	0.00	0.00	4.03	0.00	0.00	3.42	0.00	0.00	11.00	2.05	0.00	0.00	3.05	3.49	0.00	0.00	2.20	0.00
59	ER4b	ExonRegion	0	0.33	0.36	0.00	1.11	0.00	1.62	2.80	0.85	2.78	1.34	2.02	0.37	0.00	3.05	0.85	1.15	1.71	1.84	4.94	5.99	0.57	0.28	0.84	1.48	3.94	0.49	0.28	7.22	0.00