Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TMEM141	Gene	0	267.14	29.85	46.16	151.66	103.18	60.08	203.38	142.98	45.14	72.42	49.69	44.69	83.70	42.47	143.23	54.06	58.59	49.55	59.84	110.60	32.65	144.18	55.64	57.18	51.51	60.03	27.12	42.69	44.56
2	371683	Transcript	0	42.24	0.68	7.33	93.99	53.77	6.31	33.50	11.15	4.53	8.54	5.67	9.39	8.90	4.22	11.86	16.60	6.78	6.90	13.18	12.32	5.96	17.87	7.71	2.53	6.22	14.28	3.02	6.23	4.97
3	290079	Transcript	1	4.29	0.00	0.00	0.00	9.96	0.00	16.13	0.00	1.12	1.44	0.00	0.00	0.00	0.00	16.80	0.00	2.00	0.00	9.05	5.62	0.00	0.00	3.62	0.00	2.86	0.00	0.00	0.00	0.00
4	465017	Transcript	0	36.22	3.59	87.95	16.82	39.50	15.42	24.03	15.88	11.02	13.74	6.45	13.67	30.32	12.43	0.00	5.97	45.24	5.39	0.00	14.89	3.85	29.66	11.38	2.21	9.13	15.58	0.00	14.83	26.71
5	483187	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	479737	Transcript	0	6.14	0.74	1.62	5.39	0.35	1.56	4.78	2.80	2.18	2.22	0.37	0.60	2.67	2.88	4.78	0.63	2.90	1.53	0.69	2.89	1.24	1.79	0.91	1.66	0.73	1.46	0.51	2.14	0.33
7	456614	Transcript	0	0.43	1.02	0.77	0.00	3.96	0.37	0.67	1.16	0.29	0.72	0.24	0.34	0.07	1.37	0.55	1.71	1.93	0.13	0.00	0.02	0.00	0.00	0.77	0.45	0.53	0.08	0.10	0.84	0.80
8	484854	Transcript	0	4.89	1.28	0.83	2.43	1.95	2.55	2.31	1.02	1.74	1.97	0.23	1.34	0.59	1.59	9.93	3.32	5.41	1.99	1.64	0.77	1.84	2.05	0.58	3.81	0.77	1.08	0.02	1.73	0.47
9	489739	Transcript	0	7.52	0.46	2.91	1.72	0.52	1.91	6.48	3.32	1.66	3.17	1.08	1.68	2.00	1.91	6.54	2.62	5.26	4.09	2.95	1.63	1.57	1.66	1.71	1.84	1.46	2.10	0.61	1.51	0.75
10	ER1a	ExonRegion	0	42.24	0.68	7.33	93.99	53.77	6.31	33.50	11.15	4.53	8.54	5.67	9.39	8.90	4.22	11.86	16.60	6.78	6.90	13.18	12.32	5.96	17.87	7.71	2.53	6.22	14.28	3.02	6.23	4.97
11	E1_Ab	KnownBoundary	0	49.67	0.00	2.94	97.28	51.58	9.25	11.33	12.19	1.55	2.04	1.61	6.33	4.87	1.09	15.95	15.30	2.66	5.27	16.18	14.39	0.00	19.59	13.99	0.00	5.46	15.32	0.00	6.56	3.63
12	E1_Ac	KnownBoundary	0	6.02	0.00	0.00	32.14	29.18	1.96	8.75	0.00	0.00	0.00	0.00	0.00	3.60	1.13	0.00	3.82	1.33	0.00	0.00	4.13	2.05	0.00	0.00	0.00	1.93	6.57	7.55	0.00	3.63
13	E1_Ad	KnownBoundary	0	0.00	0.00	4.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Ae	KnownBoundary	0	443.98	53.32	8.07	580.86	433.27	169.35	390.15	121.68	91.57	142.37	92.85	65.57	105.63	29.80	49.83	114.75	7.99	0.00	0.00	86.26	79.62	217.95	127.90	75.91	61.64	167.92	90.80	104.87	69.36
15	ER1b	ExonRegion	0	450.62	42.45	68.10	784.14	532.26	132.39	407.96	130.86	78.65	141.93	98.14	123.78	174.27	51.00	193.01	161.38	84.76	84.60	144.48	139.67	79.22	223.26	129.22	72.15	78.94	184.73	95.52	121.63	101.70
16	E1_Af	KnownBoundary	0	971.08	81.92	327.68	1833.38	1411.52	274.21	1262.33	429.58	143.00	333.03	278.00	311.65	463.46	175.04	596.16	376.91	311.91	215.25	364.16	360.15	174.52	599.84	436.16	140.93	240.27	501.28	241.68	469.08	302.37
17	ER1c	ExonRegion	0	648.94	62.41	125.39	1120.66	815.73	184.89	642.02	189.63	102.80	194.91	152.33	189.86	290.00	88.21	354.24	235.99	122.96	152.83	235.34	222.75	102.70	323.59	183.54	101.64	121.14	295.47	150.19	238.80	163.41
18	ER1d	ExonRegion	0	840.24	82.59	193.48	1476.11	1064.63	243.32	956.62	297.47	139.32	266.69	206.40	248.26	350.92	127.38	500.85	317.06	180.17	202.74	345.26	293.92	145.70	458.15	288.29	123.23	165.19	394.25	192.05	315.06	215.32
19	ER1e	ExonRegion	0	1017.97	108.13	264.15	1840.35	1257.01	309.76	1222.22	419.00	173.58	345.66	255.58	306.64	433.22	167.27	644.54	385.09	264.54	271.32	448.06	352.97	183.77	612.63	415.30	152.37	213.09	483.15	218.56	381.97	292.82
20	ER1f	ExonRegion	0	1075.20	105.62	299.68	1857.98	1244.62	331.93	1275.04	487.18	173.97	382.71	274.55	324.44	464.95	183.50	666.90	378.25	285.11	242.06	354.06	364.09	188.72	674.78	447.06	165.80	227.92	527.58	229.36	409.27	314.58
21	E1_Da	KnownBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	2.92	0.00	2.77	1.88	2.97	1.54	0.00	0.00	0.00	3.52	7.77	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1a_E1h	KnownJunction	0	36.22	3.59	87.95	16.82	39.50	15.42	24.03	15.88	11.02	13.74	6.45	13.67	30.32	12.43	0.00	5.97	45.24	5.39	0.00	14.89	3.85	29.66	11.38	2.21	9.13	15.58	0.00	14.83	26.71
23	E1a_E1i	KnownJunction	0	155.54	13.77	284.60	300.46	125.86	61.27	358.34	189.71	40.81	112.13	87.50	187.77	197.98	89.60	153.28	59.98	287.58	43.02	24.28	101.39	35.22	130.78	76.63	32.12	50.77	129.99	56.85	74.81	163.78
24	E1a_E1j	KnownJunction	0	0.00	0.00	2.69	8.63	0.00	0.00	5.49	0.00	1.52	0.00	0.00	0.00	1.59	2.10	0.00	0.00	1.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E1a_E1k	KnownJunction	0	65.89	0.00	23.64	10.78	13.56	5.29	15.79	48.52	11.39	12.78	4.84	4.49	16.15	11.59	60.99	3.52	17.74	5.39	0.00	14.89	4.85	38.26	6.50	0.00	3.83	4.38	0.00	5.93	12.74
26	E1a_E1l	NovelJunction	0	0.00	0.00	1.07	0.00	0.00	3.61	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
27	ER1g	ExonRegion	0	703.92	55.68	307.84	1166.00	774.63	217.68	1006.06	422.53	111.85	274.61	199.16	272.42	362.75	162.04	432.37	231.56	292.05	125.41	127.85	253.38	127.30	485.39	335.61	96.80	166.73	373.97	147.16	292.84	267.23
28	ER1h	ExonRegion	0	4.89	1.28	0.83	2.43	1.95	2.55	2.31	1.02	1.74	1.97	0.23	1.34	0.59	1.59	9.93	3.32	5.41	1.99	1.64	0.77	1.84	2.05	0.58	3.81	0.77	1.08	0.02	1.73	0.47
29	E1_Ah	KnownBoundary	0	3.01	8.53	2.59	0.00	7.07	3.72	2.92	0.00	2.47	5.47	0.00	4.64	0.00	2.04	0.00	25.78	17.89	0.00	0.00	0.00	0.00	4.81	0.00	0.00	0.00	3.86	0.00	4.27	1.98
30	ER1i	ExonRegion	0	37.80	1.74	20.50	14.97	18.70	9.87	25.61	15.49	7.35	10.80	7.32	9.02	16.90	12.85	22.67	11.02	26.21	8.32	6.87	13.26	4.83	18.62	14.49	5.06	5.40	9.34	3.04	6.85	11.43
31	E1_Ai	KnownBoundary	0	72.67	0.00	9.67	19.20	26.67	17.27	30.44	29.11	15.17	17.94	14.74	11.54	17.04	18.81	43.05	7.27	20.42	9.25	16.18	33.58	4.89	25.67	27.83	16.99	10.23	11.67	0.00	9.53	17.53
32	ER1j	ExonRegion	0	360.27	42.60	110.17	128.41	80.16	100.73	336.14	288.55	73.18	97.06	63.08	100.73	156.41	71.20	135.43	62.88	135.37	47.76	50.33	153.44	62.37	195.24	72.99	72.45	78.72	108.20	43.46	69.94	107.52
33	E1b_E1j	NovelJunction	0	5.01	0.00	1.40	0.00	0.00	1.80	0.00	0.00	1.19	0.00	0.00	1.11	0.00	2.17	0.00	0.00	8.87	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E1b_E1k	KnownJunction	0	460.26	91.52	27.43	160.69	7.22	78.88	288.08	318.75	106.31	119.56	47.58	60.03	142.12	65.38	136.93	103.50	93.86	65.50	64.74	152.08	78.54	282.76	87.07	113.47	109.87	106.43	36.53	51.72	78.87
35	E1b_E1l	NovelJunction	0	27.66	8.92	1.20	0.00	11.35	9.21	25.35	11.50	8.07	2.00	1.61	1.17	4.94	8.42	7.97	6.96	2.61	9.25	15.96	18.11	0.00	22.36	4.88	4.79	1.74	6.91	0.00	12.45	1.91
36	ER1k	ExonRegion	0	12.28	1.49	0.55	2.15	0.70	3.12	4.07	5.60	2.83	4.44	0.74	1.19	3.74	3.65	9.55	1.27	4.53	3.07	1.38	5.77	2.48	3.58	1.83	3.33	1.45	2.91	1.01	4.28	0.66
37	E1_Ak	KnownBoundary	0	8.02	0.00	1.32	0.00	0.00	0.00	7.38	12.69	2.95	2.04	0.00	2.77	4.49	10.13	26.71	6.50	8.24	4.62	16.18	7.44	1.89	3.99	4.83	5.74	3.49	5.41	4.37	2.20	1.32
38	ER1l	ExonRegion	0	888.02	106.46	29.94	125.02	45.37	228.83	639.26	486.53	169.53	219.52	133.36	144.46	274.03	133.76	353.24	217.22	187.14	140.90	177.60	445.54	142.66	511.28	134.23	196.45	188.74	186.85	37.76	95.35	133.75
39	E1_Dc	KnownBoundary	0	3.01	0.00	0.95	0.00	0.00	3.41	0.00	0.00	1.58	2.04	0.00	0.00	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00	1.97	0.00	0.00	2.99	0.00	0.00	0.00	6.38	0.00
40	E1c_E1l	KnownJunction	0	432.19	93.36	36.80	127.69	56.44	296.04	1275.49	361.95	195.93	388.75	232.01	248.91	415.63	128.00	618.69	372.63	289.18	185.58	347.53	225.02	126.79	237.30	161.64	89.78	205.38	248.60	43.44	185.79	166.72
41	ER1m	ExonRegion	0	7.52	0.46	2.91	1.72	0.52	1.91	6.48	3.32	1.66	3.17	1.08	1.68	2.00	1.91	6.54	2.62	5.26	4.09	2.95	1.63	1.57	1.66	1.71	1.84	1.46	2.10	0.61	1.51	0.75
42	E1_Al	KnownBoundary	0	11.38	0.00	2.04	9.06	0.00	3.30	2.40	2.54	2.95	1.80	0.00	0.00	1.43	0.93	23.72	0.00	4.05	4.62	0.00	3.72	1.97	0.00	0.00	4.67	1.52	0.00	0.00	0.00	0.00
43	ER1n	ExonRegion	0	899.24	86.93	129.74	277.96	208.44	197.87	833.78	509.01	169.89	275.15	201.33	213.98	342.53	147.00	446.99	169.91	251.14	154.50	199.61	311.04	104.82	429.83	263.11	166.84	165.08	285.44	135.51	197.85	215.51
44	E1_Dd	NovelBoundary	0	361.76	77.85	106.91	204.69	198.21	81.11	282.64	196.97	75.52	93.67	69.18	56.05	111.14	67.33	257.12	61.58	109.01	88.23	97.11	158.45	42.16	167.54	92.69	122.08	98.12	93.64	73.01	90.31	71.67
45	E1_De	NovelBoundary	0	0.00	0.00	0.00	0.00	7.07	0.00	0.00	2.34	0.00	0.00	0.00	2.95	0.00	0.00	0.00	7.34	0.97	0.00	0.00	4.13	1.76	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
46	E1e_E2a	KnownJunction	0	842.19	92.10	230.71	338.64	456.56	118.36	582.96	427.89	129.85	224.33	125.84	94.88	175.46	99.73	463.42	83.61	169.22	186.35	145.66	255.13	73.64	434.83	184.74	195.18	153.59	96.77	89.06	107.25	109.11
47	E1e_E3a	KnownJunction	0	0.00	3.49	2.27	0.00	13.12	1.76	2.57	3.78	1.55	1.48	0.00	0.00	0.00	3.04	0.00	7.65	7.18	0.00	0.00	0.00	0.00	0.00	2.27	0.00	1.74	0.00	0.00	3.82	3.10
48	ER1o	ExonRegion	0	812.56	116.07	242.55	377.82	406.83	137.35	550.80	414.24	123.59	217.53	137.56	104.83	194.53	114.29	412.58	103.13	182.06	183.99	165.19	279.66	77.38	407.87	191.68	202.92	167.83	127.56	107.45	132.58	124.60
49	Ix	Intron	0	4.28	0.00	0.93	2.38	2.71	2.13	0.89	3.67	0.12	0.80	0.40	0.62	0.29	2.11	3.56	4.05	5.46	3.20	0.71	2.66	1.42	0.80	0.60	0.95	0.32	0.52	0.81	2.71	0.00
50	Ix_AR1	ActiveIntronRegion	0	3.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00
51	Ix_SR1	SilentIntronRegion	0	4.33	0.00	0.95	2.45	2.78	2.19	0.92	3.77	0.13	0.82	0.41	0.63	0.30	2.16	3.65	4.16	5.60	3.27	0.73	2.74	1.46	0.82	0.62	0.98	0.33	0.54	0.83	2.75	0.00
52	E2_Aa	NovelBoundary	0	5.19	0.00	1.32	0.00	0.00	3.68	2.92	4.33	0.00	3.67	0.00	0.00	0.00	1.97	18.94	12.24	2.14	0.00	8.09	0.00	3.57	0.00	0.00	3.05	1.93	0.00	0.00	5.66	0.00
53	ER2a	ExonRegion	0	773.37	114.65	307.01	483.50	441.99	120.62	503.78	412.76	95.21	216.11	150.14	93.95	189.66	115.02	337.46	114.28	155.05	163.70	164.53	312.21	71.46	459.42	144.52	197.91	156.41	91.59	69.20	89.75	107.95
54	E2_Da	KnownBoundary	0	735.61	147.95	289.04	697.33	542.47	146.79	510.93	424.10	111.49	203.00	157.51	88.28	206.54	117.94	354.79	119.80	126.01	140.76	210.40	348.33	83.91	472.66	111.80	192.73	142.60	102.52	50.29	96.83	91.55
55	ER2b	ExonRegion	0	1127.21	129.90	265.80	720.63	585.86	210.24	576.63	607.28	132.81	243.21	191.61	88.83	255.47	141.53	518.31	152.99	136.78	160.28	176.64	432.42	74.73	591.30	159.78	210.94	170.65	161.12	69.43	129.51	89.84
56	E2_Db	KnownBoundary	0	1281.75	94.04	129.31	667.57	595.38	222.57	557.73	595.25	134.90	225.57	162.63	67.17	216.10	114.37	610.52	172.12	96.45	177.36	177.81	431.03	56.48	566.59	151.34	229.33	159.23	163.03	69.68	142.61	70.71
57	ER2c	ExonRegion	0	518.47	56.47	58.72	268.69	153.56	107.33	327.47	267.03	86.53	127.54	87.00	53.32	137.35	77.99	330.33	88.80	81.44	100.70	120.29	231.77	53.23	277.74	76.93	123.03	97.28	73.22	39.57	50.82	54.91
58	E2_Dc	NovelBoundary	0	4.95	0.00	5.33	23.94	0.00	3.18	0.00	0.00	0.00	0.00	2.59	1.17	0.00	5.14	9.17	6.58	1.98	0.00	0.00	0.00	3.57	0.00	0.00	7.12	0.00	0.00	7.60	0.00	1.49
59	E2_Dd	NovelBoundary	0	0.00	0.00	11.01	10.14	6.04	0.00	0.00	0.00	2.95	0.00	0.00	0.00	4.39	1.04	0.00	0.00	12.61	0.00	0.00	0.00	0.00	0.00	0.00	2.87	3.07	0.00	4.67	2.16	0.00
60	ER2d	ExonRegion	0	4.29	0.00	0.00	0.00	9.96	0.00	16.13	0.00	1.12	1.44	0.00	0.00	0.00	0.00	16.80	0.00	2.00	0.00	9.05	5.62	0.00	0.00	3.62	0.00	2.86	0.00	0.00	0.00	0.00
61	Ix	Intron	0	4.74	2.76	4.00	1.82	4.61	3.24	1.02	5.94	1.59	4.29	3.11	2.66	1.48	4.97	9.63	5.26	12.51	5.02	2.67	2.54	2.95	2.16	1.90	5.39	2.85	3.48	1.26	6.86	2.04
62	Ix_SR1	SilentIntronRegion	0	4.91	3.23	4.79	1.38	5.37	3.46	0.82	6.43	1.80	4.71	3.53	3.33	1.69	5.14	6.72	5.53	13.39	5.50	2.66	2.69	3.16	2.03	2.22	5.93	2.00	4.61	1.08	7.52	1.82
63	Ix_AR2	ActiveIntronRegion	0	4.49	2.02	2.77	2.52	3.41	2.90	1.35	5.20	1.26	3.64	2.45	1.61	1.15	4.72	14.24	4.86	11.14	4.27	2.69	2.32	2.62	2.36	1.40	4.53	4.20	1.70	1.55	5.83	2.38
64	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.11	0.00	1.49	0.00	0.00	2.89	0.00	0.00	2.94	3.73	0.00	0.00	6.24	0.00	0.00	1.15	1.46	0.00	3.48	0.00	2.54	0.00	0.00	1.09
65	ER3a	ExonRegion	0	1.93	0.73	1.82	0.00	9.76	0.02	1.45	0.81	0.18	0.59	0.00	0.71	0.01	1.73	1.93	1.12	2.86	0.81	0.00	0.14	0.00	0.00	1.20	2.70	1.01	0.00	0.03	0.75	0.91
66	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER4a	ExonRegion	0	0.00	0.00	0.39	0.00	0.89	0.00	0.00	0.68	0.00	0.96	0.72	0.42	0.39	1.58	0.00	0.75	0.23	0.00	0.00	0.00	0.00	0.00	0.64	0.00	0.00	0.00	0.00	0.49	0.41
68	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER5a	ExonRegion	0	0.64	1.93	0.12	0.00	0.00	0.41	0.00	1.66	0.00	1.30	0.71	0.92	0.00	1.90	1.38	0.74	1.33	0.00	0.00	0.00	0.00	0.00	0.52	0.00	0.43	0.47	0.55	0.00	0.40