Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NIPSNAP3B	Gene	0	36.59	2.20	3.68	37.77	10.06	5.96	4.72	6.42	18.79	3.08	19.45	10.21	15.29	28.08	62.19	8.79	38.45	6.89	9.35	3.99	25.25	2.58	2.71	11.33	12.62	1.73	10.89	12.67	1.52
2	460936	Transcript	0	12.11	0.25	0.66	13.18	5.73	1.54	3.36	2.31	5.82	0.65	8.98	1.68	1.66	9.46	23.36	3.10	12.53	2.58	6.09	1.67	2.75	2.72	0.17	5.12	6.16	0.30	2.88	3.91	1.10
3	374762	Transcript	0	21.34	0.57	2.78	23.17	3.71	5.83	3.95	3.03	16.75	2.67	14.55	10.14	15.06	15.04	57.03	6.21	24.78	8.09	3.81	3.64	27.82	3.00	4.21	4.80	3.71	0.14	5.47	12.49	1.13
4	461177	Transcript	0	27.03	0.00	0.00	28.50	1.35	3.35	0.00	4.98	4.14	1.37	7.15	2.92	1.98	18.97	17.44	2.71	19.43	2.83	0.49	0.00	2.51	0.47	0.28	4.11	6.14	0.00	5.80	1.85	0.01
5	IG12_AR2	ActiveIntergenicRegion	0	21.26	0.00	1.40	16.03	2.05	0.58	2.25	2.06	2.19	0.00	4.16	2.67	4.26	5.25	11.94	1.39	10.22	4.03	3.12	2.09	2.79	1.51	1.77	0.00	2.80	0.88	4.61	13.43	0.93
6	ER1a	ExonRegion	0	8.42	0.00	1.60	4.18	0.00	1.96	0.00	0.00	2.25	1.24	7.74	0.00	1.21	1.81	0.00	1.81	4.94	5.26	3.23	5.42	7.23	4.76	0.39	0.00	1.53	0.00	0.52	0.00	1.92
7	E1_Ac	KnownBoundary	0	44.95	0.00	95.50	63.20	17.68	3.68	2.46	10.45	35.20	7.51	39.80	21.96	47.29	35.52	23.72	10.48	63.50	0.00	0.00	10.50	28.80	13.56	6.55	5.44	6.93	4.98	19.93	9.88	44.96
8	ER1b	ExonRegion	0	23.66	0.00	3.10	22.82	6.97	2.75	0.08	2.80	6.11	4.74	19.66	3.07	5.72	5.73	7.17	5.57	11.86	4.91	4.53	6.75	16.77	8.87	2.53	1.89	5.55	1.13	5.06	2.48	3.49
9	ER1c	ExonRegion	0	39.03	0.00	4.68	65.47	13.71	4.63	3.47	12.31	6.53	3.16	14.89	3.98	12.09	12.85	24.00	6.72	24.36	4.60	4.70	2.01	15.93	6.64	2.32	3.77	8.94	2.29	6.16	14.30	2.93
10	E1a_E2a	KnownJunction	1	59.22	0.00	3.99	59.10	12.97	5.60	2.92	16.62	7.80	0.00	4.56	1.27	4.84	13.18	33.69	3.21	18.59	0.00	0.00	2.98	7.30	12.25	2.51	8.37	7.08	2.06	0.00	27.18	1.55
11	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.53	2.53	0.00	0.00	1.40	0.00	0.00	0.00	3.97	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.07	2.59	0.00	0.00	0.00	0.00	0.00	1.28	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
13	ER2a	ExonRegion	0	46.66	0.84	5.28	49.11	9.18	6.36	6.36	5.12	13.57	4.78	30.87	11.09	17.61	27.99	26.38	7.60	47.17	6.47	16.84	7.02	24.67	4.26	3.62	13.23	24.87	3.55	12.86	20.71	3.49
14	E2_Da	NovelBoundary	0	5.19	0.00	0.00	10.78	0.00	0.00	0.00	0.00	3.11	0.00	1.23	1.54	1.75	1.20	0.00	0.00	1.15	4.62	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	0	47.60	8.34	5.38	67.73	6.48	1.96	10.13	0.00	21.74	3.52	21.61	19.34	24.46	22.22	6.98	7.11	47.27	4.88	8.09	11.58	16.89	4.47	2.51	8.37	15.00	4.08	37.32	33.79	1.55
16	E3_Aa	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	2.35	0.00	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00
17	ER3a	ExonRegion	0	69.01	3.49	9.05	66.00	16.82	5.34	6.24	8.67	22.82	6.81	32.07	16.79	26.57	37.47	48.01	8.90	49.37	7.64	15.14	6.70	30.86	3.59	5.27	13.72	28.33	5.31	25.12	22.15	2.75
18	E3_Da	NovelBoundary	0	2.89	0.00	0.00	9.27	0.00	3.30	0.00	0.00	2.53	1.96	2.53	0.00	0.00	5.03	16.74	0.00	7.81	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	2.06	6.91	0.00	0.00
19	E3a_E4a	KnownJunction	0	57.57	7.66	8.97	62.55	0.00	5.87	6.81	2.44	24.94	4.59	26.26	18.79	16.34	43.18	67.97	10.25	44.93	4.62	16.18	2.98	22.10	4.76	2.17	8.25	22.62	6.09	12.08	18.33	0.00
20	E3a_E6a	KnownJunction	0	5.31	0.00	0.00	0.00	0.00	0.00	8.75	0.00	2.86	0.00	6.23	1.54	0.00	1.37	0.00	3.14	0.00	0.00	16.18	0.00	0.00	2.29	0.00	0.00	4.89	0.00	0.00	2.29	0.00
21	I3	Intron	0	5.28	0.74	0.06	4.35	1.40	0.88	0.36	0.20	2.28	1.03	1.53	1.28	0.46	5.08	7.95	2.08	7.14	1.28	1.03	0.20	1.99	0.00	0.00	1.15	1.17	0.11	1.05	1.40	0.14
22	I3_SR1	SilentIntronRegion	0	5.29	0.74	0.06	4.36	1.40	0.88	0.36	0.20	2.28	1.03	1.53	1.28	0.46	5.09	7.96	2.08	7.15	1.29	1.03	0.20	1.99	0.00	0.00	1.15	1.18	0.11	1.05	1.40	0.14
23	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	10.78	6.78	0.00	0.00	0.00	0.00	0.00	1.49	3.19	1.94	2.26	0.00	0.00	8.51	0.00	0.00	0.00	3.61	0.00	0.00	2.45	1.40	0.00	0.00	0.00	0.00
24	ER4a	ExonRegion	0	69.79	5.15	6.67	51.33	15.28	4.60	7.58	15.77	17.15	6.28	28.84	16.66	30.67	42.20	61.94	9.60	55.70	4.66	10.05	6.15	22.88	3.31	6.84	17.09	20.56	5.31	28.97	22.31	0.49
25	E4_Da	NovelBoundary	0	0.00	0.00	1.25	0.00	0.00	0.00	5.61	0.00	0.00	0.00	0.00	1.51	1.97	6.78	14.95	0.00	12.70	4.62	0.00	0.00	0.00	0.00	0.00	12.02	3.49	0.00	0.00	1.66	0.00
26	E4a_E5a	KnownJunction	0	38.87	0.00	0.00	29.98	0.00	7.17	0.00	7.17	7.19	0.00	2.75	0.00	2.52	23.71	23.72	0.00	31.31	4.62	0.00	0.00	0.00	0.00	0.00	3.05	5.04	0.00	17.74	0.00	0.00
27	E4a_E6a	KnownJunction	0	22.89	0.00	4.09	27.39	0.00	3.68	4.86	4.23	10.32	3.91	17.18	11.42	16.40	8.91	45.25	3.29	19.00	9.25	0.00	3.89	21.54	4.96	6.50	2.63	1.52	0.00	7.40	21.34	1.55
28	I4	Intron	0	2.23	0.00	0.00	0.00	0.00	0.00	1.40	0.00	1.17	0.50	1.65	1.71	0.00	3.46	5.41	0.86	2.07	1.34	3.33	0.00	1.48	1.25	0.00	0.75	0.99	0.00	0.00	1.13	0.00
29	I4_SR1	SilentIntronRegion	0	2.25	0.00	0.00	0.00	0.00	0.00	1.41	0.00	1.18	0.50	1.66	1.72	0.00	3.48	5.45	0.87	2.09	1.35	3.35	0.00	1.49	1.25	0.00	0.75	1.00	0.00	0.00	1.14	0.00
30	E5_Aa	NovelBoundary	0	5.60	0.00	0.00	0.00	21.07	0.00	0.00	0.00	2.31	0.00	2.56	1.48	1.78	6.67	33.88	19.51	12.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.18	0.00
31	ER5a	ExonRegion	0	34.86	0.00	0.00	30.31	5.40	2.57	0.00	8.16	2.36	1.48	10.62	5.89	2.52	28.47	37.65	7.87	26.90	6.71	1.96	0.00	2.30	0.00	1.11	8.11	9.64	0.00	5.45	3.54	0.05
32	E5_Da	NovelBoundary	0	12.80	17.45	0.00	0.00	6.04	3.41	5.84	0.00	19.09	9.51	1.42	16.63	7.16	14.31	7.77	7.65	38.65	0.00	0.00	0.00	8.94	4.38	7.09	5.08	0.00	1.93	0.00	2.20	3.83
33	E5a_E6a	KnownJunction	0	34.39	0.00	0.00	42.92	0.00	3.64	0.00	4.58	7.03	2.04	15.22	5.78	1.37	21.16	8.37	2.98	18.10	0.00	0.00	0.00	3.77	1.90	0.00	5.26	8.11	0.00	0.00	3.86	0.00
34	I5	Intron	0	9.53	0.42	0.00	7.50	1.92	0.90	1.58	0.00	3.88	0.57	1.40	1.78	0.25	5.32	4.45	1.30	7.03	2.27	2.51	1.44	2.80	0.00	0.00	1.13	0.19	0.00	2.40	1.49	0.79
35	I5_AR1	ActiveIntronRegion	0	10.39	0.47	0.00	7.65	2.15	1.01	1.77	0.00	4.10	0.63	1.57	1.99	0.28	5.44	4.80	1.45	7.24	2.42	1.57	1.42	2.73	0.00	0.00	1.00	0.21	0.00	2.02	1.55	0.61
36	I5_SR2	SilentIntronRegion	0	2.58	0.00	0.00	6.75	0.00	0.00	0.00	0.00	2.25	0.00	0.00	0.03	0.00	4.58	1.72	0.00	5.63	1.12	11.02	1.73	3.58	0.00	0.00	2.15	0.00	0.00	5.49	1.09	2.41
37	E6_Aa	NovelBoundary	0	16.16	0.00	0.00	8.20	0.00	1.46	0.00	0.00	4.69	0.00	1.61	2.74	0.00	5.74	0.00	7.19	19.18	0.00	0.00	0.00	2.05	0.00	0.00	0.00	3.49	1.80	0.00	0.00	1.65
38	ER6a	ExonRegion	0	62.38	9.74	13.76	41.52	6.70	4.52	7.88	12.93	13.28	3.20	25.48	16.01	19.62	25.80	70.75	8.81	35.33	14.96	11.55	5.40	23.53	4.52	3.39	9.25	5.57	2.78	15.35	30.73	1.13
39	E6_Da	NovelBoundary	0	8.73	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	1.64	0.00	0.00	0.00	10.88	0.00	0.00	11.23	0.00	8.09	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
40	E6a_E7a	KnownJunction	0	45.65	0.00	9.67	30.63	7.07	0.00	5.49	18.41	6.30	0.00	13.19	5.90	16.46	27.27	54.02	5.97	27.15	0.00	0.00	0.00	7.22	2.48	5.02	9.03	3.67	0.00	5.07	6.11	0.00
41	E6a_E8a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	1.42	0.00	1.22	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	I6	Intron	0	9.94	0.00	0.00	0.00	0.00	1.59	0.00	0.00	2.27	0.00	2.07	1.43	0.00	2.62	2.67	4.31	1.73	1.12	7.41	0.00	3.31	0.00	0.00	1.25	1.66	0.00	0.00	1.89	1.56
43	I6_SR1	SilentIntronRegion	0	10.17	0.00	0.00	0.00	0.00	1.63	0.00	0.00	2.33	0.00	2.12	1.47	0.00	2.68	2.74	4.41	1.76	1.14	7.58	0.00	3.38	0.00	0.00	1.28	1.70	0.00	0.00	1.93	1.59
44	E7_Aa	NovelBoundary	0	13.68	0.00	0.00	0.00	0.00	1.57	5.84	0.00	14.13	0.00	1.61	2.65	0.00	17.02	16.74	7.65	41.19	0.00	0.00	0.00	5.58	0.00	0.00	2.51	0.00	2.19	0.00	0.00	0.00
45	ER7a	ExonRegion	0	59.70	6.72	6.64	78.15	16.67	7.64	9.70	12.95	27.83	5.69	36.84	18.82	26.49	47.11	89.12	13.38	56.86	10.97	18.86	6.09	40.93	4.68	4.64	21.27	18.71	1.55	21.28	24.86	0.68
46	E7_Da	KnownBoundary	1	313.45	211.16	82.47	409.82	252.01	106.47	286.07	101.42	238.14	73.42	117.33	174.36	227.66	207.01	761.00	123.01	177.91	9.25	88.57	347.58	157.11	98.74	96.43	172.63	137.18	75.14	100.59	81.55	140.64
47	E7_Db	KnownBoundary	1	45.18	28.02	24.79	168.24	18.13	38.64	95.78	2.14	44.92	25.41	61.75	37.59	66.27	54.24	196.93	13.23	57.17	4.62	0.00	51.60	58.68	18.33	31.13	53.42	27.85	7.17	39.46	26.82	16.70
48	E7b_E8a	KnownJunction	0	8.32	0.00	0.00	19.20	13.56	1.96	0.00	2.54	2.86	0.00	6.42	0.00	1.75	1.91	9.97	0.00	3.85	0.00	0.00	0.00	0.00	2.09	0.00	2.45	5.57	0.00	0.00	0.00	0.00
49	ER7b	ExonRegion	0	36.87	4.82	3.40	95.55	19.43	12.23	7.32	10.80	35.84	10.20	18.76	14.31	25.63	43.42	88.68	10.46	56.96	3.00	9.05	4.22	40.32	4.03	5.97	9.25	11.91	0.00	11.05	22.44	0.58
50	ER7c	ExonRegion	0	19.79	1.15	1.48	18.96	7.42	7.98	3.05	1.83	23.19	1.42	11.93	8.86	13.73	21.16	68.81	9.14	30.55	6.93	7.61	3.39	34.09	1.04	1.93	6.97	5.90	0.29	3.54	3.63	0.71
51	E7_Dc	NovelBoundary	0	13.63	0.00	0.00	0.00	7.22	1.53	0.00	0.00	10.17	0.00	2.85	2.98	0.00	17.48	35.08	3.75	14.54	23.12	0.00	0.00	5.98	0.00	0.00	5.74	3.30	1.63	0.00	1.75	7.99
52	I7	Intron	0	11.08	0.79	0.72	5.29	3.91	2.29	0.99	0.45	7.86	1.07	5.42	3.15	1.63	19.43	21.79	5.49	27.46	9.13	3.14	1.34	7.63	0.11	0.33	3.71	5.45	1.16	1.35	2.41	0.74
53	I7_SR1	SilentIntronRegion	0	10.03	0.00	0.44	2.81	4.37	1.28	1.31	0.72	8.31	0.66	4.65	2.40	1.10	19.98	23.15	6.92	22.79	7.55	2.08	0.52	7.10	0.24	0.24	2.04	4.78	0.76	0.00	1.63	1.30
54	I7_AR1	ActiveIntronRegion	0	9.11	0.00	0.00	0.00	4.36	2.75	0.00	0.00	4.92	1.44	12.20	2.47	0.00	22.22	39.90	4.43	28.67	11.94	0.00	1.76	7.49	0.00	0.00	4.30	3.39	1.57	0.00	3.26	0.00
55	I7_AR2	ActiveIntronRegion	0	12.10	1.54	1.00	7.69	3.49	3.20	0.72	0.22	7.53	1.43	6.00	3.85	2.15	18.91	20.23	4.23	31.75	10.53	4.19	2.08	8.15	0.00	0.43	5.23	6.12	1.51	2.62	3.10	0.24
56	I7	Intron	0	6.73	3.16	0.66	14.06	2.87	0.54	1.58	0.00	22.00	0.85	5.84	2.66	1.01	17.30	21.28	2.65	29.57	2.27	2.51	1.08	5.32	0.00	0.71	8.44	8.69	0.62	2.87	2.88	0.78
57	I7_AR1	ActiveIntronRegion	0	6.75	3.17	0.66	14.12	2.89	0.54	1.59	0.00	22.08	0.85	5.86	2.67	1.02	17.37	21.36	2.66	29.68	2.28	2.52	1.09	5.34	0.00	0.71	8.47	8.72	0.62	2.89	2.89	0.79
58	E8_Aa	NovelBoundary	0	21.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	32.16	1.92	8.16	6.93	3.95	33.50	50.63	10.71	64.78	4.62	8.09	0.00	2.01	0.00	0.00	8.19	13.83	3.99	4.72	5.98	0.00
59	ER8a	ExonRegion	0	26.39	1.00	1.03	29.34	9.36	2.23	4.67	6.69	15.30	1.37	15.55	5.20	3.70	32.76	83.48	7.45	41.32	5.06	4.94	1.28	3.75	1.74	0.28	18.02	12.65	1.21	10.99	13.34	2.48
60	IG13_AR1	ActiveIntergenicRegion	0	15.91	0.00	0.56	9.69	3.30	1.16	0.34	3.11	7.19	0.49	4.62	2.50	3.28	14.29	31.23	4.91	13.86	2.60	0.00	0.93	2.17	1.52	0.00	8.36	5.31	0.53	2.17	7.98	0.34