Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	POLE3	Gene	0	577.96	428.64	466.44	673.04	997.10	469.57	1191.33	386.60	388.18	685.71	450.85	645.03	450.91	343.95	561.13	307.61	427.57	289.44	930.53	777.61	628.78	559.46	805.86	428.92	443.22	453.50	616.20	686.15	279.48
2	374171	Transcript	1	15.10	4.05	12.63	7.53	110.69	5.19	19.30	7.22	4.63	7.68	4.28	5.19	2.87	5.10	13.04	12.19	3.92	6.84	16.00	8.07	9.83	19.26	24.87	3.81	8.39	12.96	13.35	50.35	14.62
3	374169	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	475080	Transcript	0	9.55	1.05	4.86	17.45	3.79	4.09	8.27	6.99	3.93	3.74	1.41	5.26	2.83	4.36	1.02	9.00	7.09	1.58	6.07	7.60	10.02	5.47	5.32	6.36	0.86	0.91	4.29	9.52	4.45
5	479871	Transcript	0	10.16	2.32	5.39	8.05	2.04	5.86	6.92	4.08	1.43	6.87	1.78	4.72	1.02	2.70	6.03	5.46	6.58	7.75	6.26	3.25	5.58	3.38	3.21	5.20	3.46	1.79	0.86	3.41	1.52
6	ER1a	ExonRegion	1	9.22	0.47	6.79	12.01	55.15	1.20	10.69	3.88	1.14	3.92	4.21	1.70	1.11	3.11	4.60	8.41	1.41	3.51	15.76	3.51	1.35	7.82	14.82	1.04	4.01	5.44	8.80	22.68	8.24
7	E1_Da	NovelBoundary	0	7.79	0.00	0.00	10.14	13.71	1.96	0.00	2.54	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	3.08	0.00	8.09	4.13	3.93	0.00	0.00	2.99	0.00	2.19	2.48	4.54	1.49
8	E1a_E2a	KnownJunction	1	16.40	0.00	14.77	0.00	92.40	3.88	13.39	7.22	3.11	10.31	4.75	1.54	0.00	5.52	18.34	17.75	3.78	5.39	8.09	4.13	3.85	19.64	18.81	3.05	9.21	18.58	15.85	46.64	19.15
9	Ix	Intron	0	2.63	2.37	2.46	7.03	2.39	1.35	0.49	0.45	0.96	1.06	0.00	0.91	0.32	0.44	1.35	0.00	1.10	2.44	5.48	0.68	2.45	1.33	0.89	1.05	0.00	1.16	0.00	4.00	1.31
10	Ix_AR1	ActiveIntronRegion	0	2.65	2.39	2.48	7.10	2.42	1.36	0.50	0.46	0.97	1.07	0.00	0.92	0.32	0.45	1.36	0.00	1.11	2.46	5.54	0.68	2.47	1.34	0.90	1.07	0.00	1.17	0.00	4.04	1.32
11	E2_Aa	NovelBoundary	0	10.74	8.43	17.04	0.00	116.13	3.68	36.67	11.79	9.96	9.87	0.00	9.07	0.00	3.61	0.00	14.23	14.63	14.64	16.18	7.61	15.08	12.79	42.60	3.05	1.93	14.08	0.00	37.16	6.93
12	E2_Ab	NovelBoundary	1	18.11	18.32	9.97	19.63	379.63	18.49	62.65	5.03	13.55	12.10	1.30	16.57	9.04	9.26	17.94	3.14	5.20	23.76	48.55	30.85	51.50	41.57	78.95	10.05	17.58	18.41	8.55	125.67	12.02
13	ER2a	ExonRegion	1	19.69	11.68	16.33	10.56	184.50	10.49	33.82	10.57	9.65	8.82	3.88	12.32	7.51	6.69	16.18	10.40	6.57	11.62	24.14	16.55	24.30	30.31	40.99	7.33	11.96	14.84	15.40	81.74	16.45
14	E2_Ac	KnownBoundary	1	28.20	4.85	15.00	21.57	41.71	13.24	20.88	8.66	14.16	20.09	2.59	10.81	8.50	4.63	9.97	15.30	9.43	0.00	0.00	11.25	30.93	19.59	29.94	4.90	3.86	20.64	18.44	72.79	11.92
15	ER2b	ExonRegion	1	139.33	37.57	94.78	324.96	730.42	85.01	185.39	51.21	39.08	55.95	24.62	109.12	75.38	51.82	103.79	66.67	50.37	82.81	75.95	167.50	148.43	133.46	203.60	35.49	55.74	148.08	93.18	401.35	53.14
16	E2_Ad	KnownBoundary	1	399.33	82.21	255.25	981.40	1286.26	220.65	441.41	155.97	73.12	163.50	73.80	250.15	184.82	124.76	115.21	206.16	135.98	61.65	72.83	427.72	334.36	413.98	497.91	86.67	142.49	443.60	240.64	734.94	117.23
17	ER2c	ExonRegion	1	344.49	70.86	226.82	805.44	1407.64	183.42	388.75	145.71	65.65	149.74	80.42	251.44	166.46	111.83	216.82	169.56	124.50	192.99	185.56	411.56	294.85	339.17	447.93	75.60	131.70	359.45	207.75	811.99	109.10
18	ER2d	ExonRegion	0	275.05	73.75	339.42	876.37	1085.67	132.03	549.35	149.48	53.76	182.57	107.75	287.85	204.53	97.52	177.47	220.72	238.15	152.07	213.23	271.29	194.71	344.40	448.54	62.57	98.98	375.95	175.41	591.05	185.04
19	E2_Da	KnownBoundary	0	2.36	0.00	2.49	10.78	0.00	0.00	0.00	1.99	0.00	1.96	0.00	3.37	1.24	1.82	0.00	0.00	3.47	0.00	0.00	6.78	0.00	4.52	1.97	0.00	0.00	0.00	0.00	2.25	2.01
20	E2a_E2e	KnownJunction	0	154.95	55.94	143.04	143.00	119.08	51.64	165.01	115.90	56.37	84.64	24.01	102.86	99.86	60.84	108.63	27.23	67.91	61.90	161.62	104.45	50.42	157.18	130.31	71.84	64.56	74.41	31.91	81.87	95.48
21	E2a_E2f	NovelJunction	0	3.01	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER2e	ExonRegion	0	9.55	1.05	4.86	17.45	3.79	4.09	8.27	6.99	3.93	3.74	1.41	5.26	2.83	4.36	1.02	9.00	7.09	1.58	6.07	7.60	10.02	5.47	5.32	6.36	0.86	0.91	4.29	9.52	4.45
23	E2_Ae	KnownBoundary	0	19.41	4.17	2.52	8.84	17.83	5.76	23.69	10.35	10.08	19.49	2.85	7.80	4.52	4.23	0.00	3.52	19.88	4.62	0.00	7.11	12.35	10.60	2.02	23.21	1.86	3.35	14.01	6.29	3.30
24	ER2f	ExonRegion	0	443.67	119.61	100.04	176.45	157.53	202.51	371.40	240.19	82.72	209.18	87.17	194.22	164.06	158.38	217.57	176.76	139.68	193.19	265.80	559.92	252.57	542.41	258.24	171.13	158.24	201.52	57.51	235.93	108.49
25	E2_Db	KnownBoundary	0	7.55	0.00	2.99	10.78	0.00	0.00	2.92	2.49	0.00	0.00	0.00	1.33	0.00	0.84	0.00	2.91	0.00	4.62	0.00	0.00	0.00	0.00	0.00	5.98	0.00	0.00	0.00	1.71	1.32
26	E2b_E2f	KnownJunction	0	604.31	212.42	123.73	202.10	146.93	319.60	821.38	293.67	129.12	461.01	255.99	414.57	265.96	255.38	577.43	468.86	280.24	257.63	678.87	891.25	470.41	495.56	588.78	242.97	382.75	327.82	76.14	467.69	167.68
27	ER2g	ExonRegion	0	10.16	2.32	5.39	8.05	2.04	5.86	6.92	4.08	1.43	6.87	1.78	4.72	1.02	2.70	6.03	5.46	6.58	7.75	6.26	3.25	5.58	3.38	3.21	5.20	3.46	1.79	0.86	3.41	1.52
28	E2_Af	KnownBoundary	0	11.44	0.00	7.37	0.00	6.04	3.72	7.84	9.80	0.00	0.00	1.52	1.48	0.00	2.15	0.00	3.82	2.36	4.62	8.09	6.62	2.05	0.00	0.00	11.48	5.11	0.00	1.94	15.91	0.00
29	ER2h	ExonRegion	0	561.50	338.10	313.26	257.86	585.50	391.75	1340.52	400.43	197.66	679.54	491.49	758.73	437.37	323.19	525.65	346.20	527.14	331.27	804.83	757.88	488.23	426.10	997.39	320.34	413.02	849.83	562.25	1332.60	438.16
30	E2_Dc	NovelBoundary	0	5.01	0.00	3.09	0.00	0.00	3.76	8.75	0.00	1.52	0.00	0.00	1.87	0.00	0.86	0.00	0.00	1.10	5.39	16.18	3.89	1.85	4.47	0.00	2.33	1.44	0.00	0.00	2.20	1.52
31	E2c_E3a	KnownJunction	0	595.81	401.86	676.22	543.98	1062.25	542.36	1171.76	455.71	263.60	636.25	402.96	588.72	339.33	333.10	475.58	301.02	399.11	281.65	970.20	971.05	557.05	611.70	700.58	476.13	454.02	501.07	450.96	624.64	244.89
32	I2	Intron	0	2.92	3.30	2.00	2.45	1.67	1.17	0.69	1.26	2.11	0.99	0.41	1.05	0.00	1.39	2.51	2.84	2.29	5.70	0.54	3.76	1.46	1.23	0.00	3.30	0.73	0.54	0.31	2.50	1.82
33	I2_SR1	SilentIntronRegion	0	3.33	3.33	2.60	3.71	2.53	1.78	0.52	1.43	2.32	1.50	0.62	0.64	0.00	1.17	3.81	4.32	2.32	6.15	0.83	5.71	1.11	1.40	0.00	1.67	0.74	0.41	0.47	3.80	2.42
34	I2_SR2	SilentIntronRegion	0	2.21	3.32	0.86	0.00	0.00	0.00	1.04	0.95	1.74	0.00	0.00	1.90	0.00	1.86	0.00	0.00	2.31	4.96	0.00	0.00	2.20	0.93	0.00	6.63	0.74	0.81	0.00	0.00	0.69
35	E3_Aa	NovelBoundary	0	10.74	4.85	0.00	0.00	0.00	0.00	4.75	4.43	1.61	0.00	0.00	3.10	1.97	2.04	0.00	13.46	3.80	0.00	0.00	3.14	0.00	2.43	0.00	6.10	1.93	0.00	0.00	6.20	3.04
36	ER3a	ExonRegion	0	823.31	471.06	790.95	953.57	2024.00	517.53	1095.11	537.37	260.24	611.62	363.67	572.58	365.44	413.25	549.00	356.07	394.40	355.88	872.58	1025.40	631.28	767.11	763.09	513.69	462.28	414.12	420.25	698.31	228.64
37	E3_Da	KnownBoundary	0	949.78	580.83	891.95	1369.21	2808.90	483.35	1102.24	581.02	291.03	615.32	392.24	536.80	384.43	474.75	765.79	380.66	394.52	476.60	1115.86	1106.02	674.50	825.86	815.03	530.32	495.46	352.11	463.48	763.03	228.65
38	ER3b	ExonRegion	0	774.95	606.15	638.30	905.25	1325.83	653.48	1633.90	523.84	562.34	957.45	631.53	883.51	623.78	475.27	778.64	408.94	579.65	385.76	1309.69	1056.19	877.92	749.36	1090.46	604.23	618.85	582.26	872.08	871.60	369.90