Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-262H14.10	Gene	0	57.29	28.99	14.21	27.25	20.83	22.91	10.44	9.48	21.05	6.62	29.08	10.93	8.94	25.29	48.48	100.76	147.38	7.40	12.04	19.60	26.05	7.34	6.81	21.63	23.70	16.41	25.37	47.14	3.52
2	427509	Transcript	0	6.86	3.28	0.00	2.93	0.00	4.40	0.00	1.47	0.00	0.00	0.00	0.00	0.00	1.09	0.00	8.10	3.81	2.18	0.00	3.93	1.43	4.33	0.00	3.44	0.00	1.26	1.83	2.61	0.54
3	424345	Transcript	0	26.98	14.93	6.52	6.85	8.15	11.24	2.20	4.77	8.53	2.25	14.46	5.09	3.04	12.59	23.98	58.06	87.89	1.61	3.89	7.88	12.71	1.25	1.70	12.60	12.55	4.56	4.60	17.56	1.48
4	452184	Transcript	0	52.25	26.81	26.41	59.08	38.04	37.80	27.58	10.99	42.26	20.18	2.72	26.11	30.21	14.27	95.38	45.57	139.28	24.78	24.97	22.66	29.71	15.90	22.87	11.90	17.43	40.17	124.90	79.67	11.15
5	IG29	Intergenic	0	45.01	7.89	7.17	6.15	12.56	10.02	0.86	3.95	11.07	3.09	5.61	1.32	6.11	1.17	63.82	91.66	82.55	6.61	2.74	0.00	14.67	4.64	0.77	4.61	12.25	23.57	18.05	16.07	1.15
6	IG29_SR1	SilentIntergenicRegion	0	48.64	8.54	7.75	6.65	13.59	10.83	0.93	4.27	11.97	3.35	6.07	1.43	6.61	1.26	68.99	99.14	89.28	7.15	2.96	0.00	15.86	5.01	0.84	4.99	13.25	25.50	19.53	17.37	1.24
7	ER1a	ExonRegion	0	6.86	3.28	0.00	2.93	0.00	4.40	0.00	1.47	0.00	0.00	0.00	0.00	0.00	1.09	0.00	8.10	3.81	2.18	0.00	3.93	1.43	4.33	0.00	3.44	0.00	1.26	1.83	2.61	0.54
8	ER1b	ExonRegion	1	120.85	59.13	5.36	116.12	11.93	47.99	10.96	15.98	70.56	24.08	43.20	10.85	27.34	20.23	48.88	153.42	246.55	33.54	52.18	54.47	59.74	64.98	22.22	38.20	57.58	126.92	132.95	255.67	7.04
9	E1_Da	NovelBoundary	0	129.65	27.82	72.60	53.71	0.00	26.78	2.75	4.58	44.49	33.39	15.85	35.93	23.69	52.78	71.56	108.09	242.97	23.89	64.74	77.08	52.22	35.83	18.42	26.50	46.37	66.69	75.44	36.89	30.24
10	E1a_E3a	KnownJunction	1	54.86	23.85	7.23	0.00	0.00	39.56	10.53	2.54	60.75	10.59	31.13	5.90	30.92	8.82	19.93	81.09	486.52	13.87	0.00	17.28	40.23	24.55	16.06	11.13	19.55	57.55	28.87	126.35	1.58
11	I1	Intron	0	162.55	30.34	84.96	89.41	10.07	52.97	11.34	13.97	41.86	39.92	20.75	40.58	39.35	52.81	115.42	190.97	215.51	42.41	41.03	74.95	81.58	75.37	28.30	30.65	73.16	132.02	103.20	55.93	38.58
12	I1_AR1	ActiveIntronRegion	0	163.13	30.45	85.27	89.74	10.11	53.16	11.38	14.03	42.01	40.07	20.83	40.73	39.49	53.01	115.85	191.67	216.29	42.57	41.18	75.22	81.87	75.65	28.41	30.76	73.43	132.50	103.56	56.13	38.72
13	E2_Aa	NovelBoundary	0	165.51	48.77	80.35	156.59	41.71	43.01	21.06	19.61	25.15	16.30	2.94	25.03	60.60	40.37	170.82	126.83	157.07	56.25	16.18	56.24	61.05	63.59	56.44	17.59	39.02	84.71	95.22	51.09	19.51
14	ER2a	ExonRegion	0	74.19	18.14	16.65	71.93	4.54	20.06	6.32	6.33	15.36	11.84	5.20	13.60	18.98	19.29	48.69	101.72	82.31	27.27	23.14	22.74	22.08	33.47	19.66	12.38	13.82	48.08	37.93	34.62	7.46
15	E2_Da	NovelBoundary	0	162.50	25.98	47.86	123.59	12.82	20.18	2.92	12.24	20.77	22.05	5.73	19.28	25.83	41.03	41.46	134.18	125.29	46.23	40.46	26.22	44.08	76.91	20.93	25.48	39.14	61.93	18.59	20.62	27.43
16	E2a_E3a	KnownJunction	0	27.31	0.00	8.10	21.57	28.88	16.34	8.58	7.27	18.91	5.99	1.61	6.60	22.80	5.38	34.68	13.69	50.78	9.25	8.09	0.00	1.89	23.92	4.88	0.00	13.68	43.26	55.66	46.95	2.01
17	I2	Intron	0	97.06	11.85	14.35	51.26	2.33	15.07	6.73	6.14	9.37	7.57	1.13	10.01	4.64	24.61	32.87	72.71	39.13	26.93	19.80	30.63	20.40	31.79	9.48	13.33	19.08	38.20	7.86	13.98	5.12
18	I2_AR1	ActiveIntronRegion	0	97.91	11.93	14.46	51.74	2.35	15.20	6.79	6.20	9.45	7.64	1.15	10.09	4.66	24.83	33.18	73.37	39.49	27.16	19.98	30.92	20.59	32.08	9.57	13.43	19.26	38.55	7.93	14.12	5.17
19	I2	Intron	0	46.15	8.74	7.43	62.71	21.03	24.79	18.99	8.18	9.90	6.41	3.68	8.39	8.56	10.43	42.32	53.31	40.17	19.10	9.46	16.23	15.36	11.89	11.19	4.34	8.08	15.01	17.01	12.94	4.95
20	I2_AR1	ActiveIntronRegion	0	50.39	6.88	9.78	52.40	4.80	9.90	3.51	3.25	8.42	5.08	0.95	7.20	7.69	12.17	42.88	55.24	50.67	19.54	6.85	17.38	7.44	15.27	9.25	4.82	10.11	18.82	7.64	8.68	4.89
21	I2_SR1	SilentIntronRegion	1	37.91	12.56	2.70	84.07	54.04	55.12	50.46	18.22	12.98	9.15	9.24	10.87	10.38	6.97	41.44	49.78	19.21	18.36	14.81	14.01	31.51	5.13	15.19	3.41	4.04	7.43	36.07	21.65	5.12
22	E3_Aa	NovelBoundary	0	48.25	48.38	1.07	0.00	20.93	24.06	2.92	0.00	19.86	3.91	7.43	13.01	0.00	9.06	17.54	46.05	76.13	0.00	8.09	12.07	19.61	0.00	0.00	11.31	10.99	2.19	0.00	8.36	1.68
23	ER3a	ExonRegion	0	163.42	112.96	63.44	170.71	131.49	99.84	80.82	30.89	101.60	32.41	46.26	47.32	53.47	55.01	190.63	101.05	253.33	32.78	70.48	86.31	107.11	44.91	40.98	62.21	61.17	66.48	164.58	169.32	13.10
24	E3_Da	NovelBoundary	0	27.84	28.12	4.16	30.41	0.00	39.13	5.78	0.00	7.22	5.83	27.90	9.91	3.60	10.75	0.00	87.51	50.49	10.02	0.00	24.23	45.32	0.00	0.00	0.00	20.42	3.78	0.00	23.45	0.00
25	E3a_E4a	KnownJunction	0	125.17	84.06	90.29	147.53	126.00	109.00	87.88	31.35	140.17	59.24	4.27	90.51	96.55	36.71	287.22	83.84	507.83	52.66	64.74	67.81	90.17	17.11	69.54	32.54	43.34	97.20	371.34	263.16	40.51
26	E3a_E5a	KnownJunction	1	41.05	20.46	4.48	0.00	6.63	36.99	26.66	0.00	36.15	5.19	70.17	0.00	1.43	24.57	16.74	35.19	30.79	13.74	24.28	15.38	18.17	6.08	13.64	5.68	21.03	33.64	78.12	251.53	0.00
27	E3a_E6a	NovelJunction	0	2.65	0.00	0.00	0.00	6.34	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	1	33.03	29.41	16.37	54.18	30.80	37.68	34.18	9.96	34.52	23.76	2.49	17.37	12.69	8.66	104.38	25.88	46.81	32.63	27.77	22.74	30.73	5.00	20.22	14.57	16.31	12.29	155.10	52.90	5.73
29	I4	Intron	0	47.64	22.86	5.50	11.87	20.86	26.57	3.05	4.55	6.35	4.23	20.80	7.66	1.21	15.53	18.47	89.98	87.61	7.33	10.50	15.53	31.13	1.25	1.43	5.78	17.09	3.85	5.93	17.76	0.96
30	I4_SR1	SilentIntronRegion	0	45.88	23.20	5.70	11.19	21.16	26.17	2.48	4.96	6.67	4.32	20.61	7.79	1.09	14.52	17.27	86.45	88.79	8.20	9.86	15.19	30.70	1.30	1.42	4.85	15.72	4.08	5.34	18.55	0.58
31	I4_AR1	ActiveIntronRegion	0	54.15	22.32	4.40	13.00	21.01	27.00	4.81	3.48	5.85	3.99	19.02	7.29	1.66	17.04	20.55	93.46	85.00	5.10	13.16	17.41	31.69	1.07	1.49	8.60	20.00	2.88	7.29	13.67	2.29
32	I4_SR2	SilentIntronRegion	0	41.23	19.54	8.62	18.47	13.90	32.11	3.37	3.27	3.02	4.05	36.16	7.49	0.89	26.29	29.33	139.49	80.64	4.06	6.43	10.36	36.15	1.52	1.21	6.45	26.07	5.50	9.30	28.35	0.00
33	E5_Aa	NovelBoundary	0	75.15	37.71	5.43	10.14	31.68	18.61	2.23	2.24	18.21	5.35	40.21	11.20	1.21	18.72	60.19	132.73	130.82	0.00	7.87	7.86	56.19	4.67	7.24	25.48	31.41	1.97	0.00	14.24	0.00
34	ER5a	ExonRegion	0	43.70	18.76	8.53	20.66	15.31	20.21	13.34	2.46	20.02	4.98	48.40	6.19	6.21	26.36	29.21	106.74	140.91	5.64	9.40	22.59	22.91	3.18	6.73	16.83	21.85	10.22	28.22	50.87	2.76
35	E5_Da	KnownBoundary	0	16.93	18.81	9.04	9.92	21.52	15.85	17.11	0.00	11.51	3.67	31.13	3.43	1.91	13.01	0.00	99.22	176.23	0.00	0.00	12.16	23.50	2.43	4.88	18.06	10.80	0.00	7.16	13.48	2.01
36	ER5b	ExonRegion	0	60.79	25.45	14.12	16.78	19.55	17.94	7.43	8.94	13.50	4.63	30.11	7.18	5.24	25.61	33.11	101.30	140.29	5.58	7.20	14.76	20.06	2.95	4.77	15.45	22.46	10.95	14.99	41.46	3.12
37	E5b_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	I5	Intron	0	0.83	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.92	0.49	0.00	0.00	6.07	10.70	0.58	0.00	0.00	0.00	3.33	0.00	0.00	0.85	1.10	0.00	0.00	0.00	0.00
39	I5_SR1	SilentIntronRegion	0	0.83	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.91	0.49	0.00	0.00	6.11	10.78	0.59	0.00	0.00	0.00	3.33	0.00	0.00	0.85	1.10	0.00	0.00	0.00	0.00
40	ER6a	ExonRegion	1	31.15	19.01	7.16	5.34	9.02	18.97	0.75	1.37	7.86	1.61	18.27	2.32	2.65	9.67	12.51	68.44	114.96	0.72	4.76	10.13	17.92	0.67	2.55	12.94	15.94	2.17	2.65	19.86	1.74
41	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER7a	ExonRegion	0	42.96	30.19	11.31	12.12	12.20	19.29	2.81	13.53	21.30	4.99	23.93	15.94	7.33	27.68	74.28	120.56	184.21	1.75	7.51	14.53	25.58	2.65	1.20	34.59	24.37	9.70	5.38	26.48	2.55
43	E7_Da	NovelBoundary	0	0.00	0.00	0.00	10.78	0.00	1.61	0.00	0.00	6.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	I7	Intron	0	0.00	0.41	0.00	0.00	1.85	0.70	0.00	0.00	0.42	0.36	0.30	0.23	0.49	0.00	3.01	1.25	0.56	0.00	0.00	0.69	3.41	0.23	0.00	0.54	0.36	0.00	1.85	0.41	0.50
45	I7_SR1	SilentIntronRegion	0	0.00	0.41	0.00	0.00	1.85	0.70	0.00	0.00	0.43	0.36	0.30	0.23	0.49	0.00	3.02	1.25	0.57	0.00	0.00	0.70	3.42	0.23	0.00	0.54	0.36	0.00	1.85	0.41	0.50
46	E8_Aa	NovelBoundary	0	6.02	0.00	0.00	0.00	0.00	9.02	0.00	0.00	1.13	5.79	0.00	5.06	0.00	6.76	0.00	2.91	16.25	0.00	8.09	0.00	21.54	0.00	0.00	2.99	1.44	0.00	0.00	0.00	0.00
47	ER8a	ExonRegion	0	1.55	2.42	0.66	0.20	0.00	5.93	0.92	0.06	2.32	0.07	0.00	2.46	0.03	1.30	1.94	2.71	8.65	2.10	1.13	0.02	3.67	0.00	0.05	0.00	0.00	0.02	4.46	0.71	0.01