Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NDUFB6	Gene	0	604.61	225.11	60.18	409.27	651.34	191.71	519.60	484.88	160.54	127.01	115.66	138.89	225.94	99.92	759.03	154.05	108.79	114.44	620.71	208.72	268.56	209.26	140.76	140.07	136.03	97.06	147.09	150.14	182.47
2	379847	Transcript	0	661.89	461.38	179.64	1161.82	1760.03	398.83	825.37	411.09	389.79	129.55	124.56	175.70	257.37	167.54	1323.36	206.70	148.52	160.63	1139.00	369.08	513.30	177.78	120.49	255.11	119.08	68.47	250.09	187.24	188.23
3	350021	Transcript	0	31.73	14.35	2.57	123.16	257.75	25.67	45.66	29.16	23.39	10.35	1.33	5.42	13.72	6.36	26.31	0.00	2.52	4.62	113.29	18.94	36.30	6.95	8.13	5.80	1.93	10.56	21.62	14.24	3.00
4	IG35_SR1	SilentIntergenicRegion	0	1.03	0.00	0.00	0.00	2.35	0.00	0.00	0.00	0.00	0.97	0.00	2.16	0.00	0.00	2.22	0.00	0.72	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	11.25	0.00	0.56	0.00	8.72	2.06	10.58	6.90	1.40	3.61	0.00	0.62	0.65	0.23	0.00	4.43	0.25	0.00	5.66	2.81	2.50	6.31	4.07	4.30	0.00	0.39	0.00	0.41	0.67
6	ER1b	ExonRegion	0	1860.86	395.45	140.78	893.51	1385.21	315.41	1090.24	1592.08	243.95	338.66	249.75	288.65	564.03	207.91	1492.56	374.26	229.45	273.30	1103.94	371.84	504.35	709.88	378.01	280.38	376.59	259.87	292.37	355.04	487.46
7	E1_Da	NovelBoundary	0	8.49	0.00	0.00	0.00	0.00	13.54	0.00	0.00	0.00	0.00	0.00	1.39	0.00	1.15	0.00	0.00	3.92	0.00	0.00	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	3.68	3.90
8	E1a_E2a	KnownJunction	0	2675.93	907.84	3.89	130.93	406.75	831.66	2162.43	2754.34	597.39	721.58	590.97	544.15	1118.41	446.77	4318.46	793.45	442.51	699.69	3455.03	1000.16	1346.75	626.39	741.85	546.71	977.10	549.99	557.95	490.34	915.33
9	E1a_E3a	NovelJunction	0	197.60	11.34	0.00	0.00	5.89	30.27	72.03	70.42	41.35	20.93	21.42	17.35	64.39	7.87	286.22	35.72	9.90	51.50	64.74	23.90	30.32	22.61	15.32	16.45	27.66	33.43	50.99	23.77	18.03
10	E1a_E4a	NovelJunction	0	11.56	4.17	0.00	0.00	0.00	3.76	9.96	6.92	9.50	2.04	0.00	1.36	16.78	2.22	9.37	0.00	4.34	4.62	24.28	0.00	10.63	0.00	6.65	3.05	0.00	2.15	0.00	5.89	13.14
11	I1	Intron	0	3.31	1.03	0.26	1.13	2.92	1.60	0.32	0.93	0.42	0.82	0.60	1.07	0.12	0.80	0.81	1.28	1.83	1.67	1.31	0.53	2.29	0.11	0.46	0.34	0.45	0.45	0.92	0.72	0.04
12	I1_AR1	ActiveIntronRegion	0	7.02	0.00	0.61	2.15	1.32	0.06	0.00	3.04	0.00	1.25	0.04	1.27	0.30	2.04	1.65	0.74	0.67	1.61	0.48	0.83	1.59	0.54	1.08	0.32	0.74	1.41	0.51	0.94	0.20
13	I1_SR1	SilentIntronRegion	0	3.37	1.25	0.55	0.00	5.82	2.26	0.26	0.00	0.15	1.54	1.20	0.75	0.24	0.23	0.71	1.75	2.51	1.73	2.07	0.00	2.14	0.00	0.47	0.00	0.47	0.61	0.99	1.09	0.00
14	I1_AR2	ActiveIntronRegion	0	1.52	0.00	0.00	0.00	0.28	1.66	0.00	0.84	0.00	0.00	0.00	1.00	0.00	0.48	0.00	1.76	3.17	1.36	2.26	1.95	3.98	0.00	0.00	0.00	0.00	0.00	1.68	0.00	0.00
15	I1_AR3	ActiveIntronRegion	0	2.54	2.81	0.00	1.82	2.70	1.66	0.86	0.09	0.32	0.59	0.46	1.16	0.00	0.74	0.50	1.76	2.33	0.82	1.37	1.20	4.05	0.00	0.00	0.61	0.50	0.00	1.22	0.41	0.00
16	I1_SR2	SilentIntronRegion	0	1.38	0.36	0.00	0.99	2.21	2.14	0.23	0.83	1.14	0.19	0.71	1.14	0.00	0.46	0.65	0.84	1.52	2.40	1.08	0.00	1.31	0.00	0.41	0.49	0.25	0.00	0.83	0.60	0.00
17	ER2a	ExonRegion	0	1474.76	661.22	92.36	578.41	1447.49	592.26	1800.43	1261.44	516.14	403.09	490.15	620.92	829.36	356.07	2712.02	477.25	447.68	353.71	2209.97	690.16	890.69	422.44	640.73	484.96	492.61	443.22	872.64	791.38	725.59
18	E2_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	7.37	7.02	0.00	0.00	1.89	0.00	0.00	3.01	0.00	0.00	9.97	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00
19	E2a_E3a	KnownJunction	0	1175.40	521.69	166.28	1417.74	2555.42	576.89	1206.37	805.26	610.09	158.10	193.19	364.06	390.92	254.07	1586.58	225.37	292.60	210.75	1229.83	464.44	864.70	311.30	249.65	392.93	163.36	109.82	742.78	461.22	360.28
20	E2a_E4a	KnownJunction	0	31.73	14.35	2.57	123.16	257.75	25.67	45.66	29.16	23.39	10.35	1.33	5.42	13.72	6.36	26.31	0.00	2.52	4.62	113.29	18.94	36.30	6.95	8.13	5.80	1.93	10.56	21.62	14.24	3.00
21	I2	Intron	0	4.45	2.54	0.91	0.78	6.94	1.96	0.66	0.10	2.27	1.97	1.17	4.68	1.56	1.93	4.62	1.82	4.00	2.74	1.22	2.56	2.96	0.00	0.20	1.65	0.47	0.34	0.70	2.85	0.15
22	I2_AR1	ActiveIntronRegion	0	1.05	0.79	0.00	1.08	6.32	1.71	0.49	0.00	0.87	1.93	0.47	2.20	0.00	0.76	1.34	0.74	2.30	1.78	0.00	3.31	3.00	0.00	0.00	0.52	0.35	0.00	0.45	0.00	0.00
23	I2_SR1	SilentIntronRegion	0	5.44	3.05	1.18	0.70	7.13	2.03	0.71	0.13	2.67	1.99	1.38	5.41	2.01	2.27	5.58	2.14	4.49	3.02	1.58	2.35	2.96	0.00	0.26	1.97	0.50	0.44	0.78	3.68	0.19
24	Ix	Intron	0	2.12	0.00	0.00	0.00	4.84	1.02	0.00	0.00	1.39	1.43	1.18	0.92	0.32	1.35	1.14	0.61	0.00	4.29	6.33	0.00	1.41	0.89	0.90	2.13	1.06	0.78	0.00	1.61	0.00
25	Ix_SR1	SilentIntronRegion	0	2.14	0.00	0.00	0.00	4.88	1.03	0.00	0.00	1.40	1.44	1.19	0.93	0.32	1.36	1.13	0.62	0.00	4.33	6.39	0.00	1.43	0.90	0.90	2.15	1.07	0.79	0.00	1.63	0.00
26	Ix_SR2	SilentIntronRegion	0	2.14	1.46	0.55	10.00	4.73	1.77	1.95	1.20	2.87	4.34	2.67	4.75	0.21	2.08	8.93	1.65	2.02	3.63	2.06	1.14	2.00	0.00	0.00	2.80	0.46	2.28	0.00	0.79	0.43
27	Ix_AR1	ActiveIntronRegion	0	4.94	4.35	0.96	1.75	2.83	1.20	0.58	2.93	3.34	2.86	2.08	3.85	1.51	4.96	5.60	3.99	3.63	3.76	0.46	0.69	1.58	1.04	1.05	2.48	1.45	2.39	2.12	2.01	0.00
28	E3_Aa	NovelBoundary	0	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.78	0.00	0.00	2.98	0.00	1.00	0.00	0.00	4.30	0.00	0.00	0.00	5.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER3a	ExonRegion	0	1026.96	721.66	326.32	1642.42	2523.10	596.61	1303.83	608.37	579.99	219.36	231.65	283.91	420.56	289.03	2078.32	341.82	253.84	266.55	1786.40	591.49	746.09	278.14	180.42	419.62	198.61	101.25	372.94	276.64	302.50
30	E3_Da	NovelBoundary	0	0.00	4.85	2.74	0.00	0.00	5.33	0.00	0.00	4.48	3.24	0.00	2.98	0.00	1.15	0.00	3.82	6.39	13.87	0.00	0.00	14.52	0.00	0.00	3.05	0.00	0.00	0.00	0.00	3.76
31	E3a_E4a	KnownJunction	0	1089.93	1057.34	402.30	2734.11	3687.97	810.25	1588.74	621.18	746.79	262.36	191.61	221.50	469.96	290.92	2927.01	457.16	190.23	322.75	2660.62	777.87	945.76	287.33	166.91	451.31	230.95	125.61	132.05	193.16	273.85
32	Ix	Intron	0	3.36	1.59	0.69	1.18	1.21	1.70	0.50	1.06	2.82	3.33	1.47	1.42	0.43	2.65	7.04	1.84	5.66	2.43	2.90	0.45	2.23	0.30	0.15	3.37	1.30	0.52	0.75	1.48	1.16
33	Ix_SR1	SilentIntronRegion	0	4.44	2.11	0.70	1.56	1.06	1.88	0.66	1.20	3.53	3.50	1.84	1.77	0.52	3.09	8.21	2.00	6.85	2.64	3.32	0.60	1.94	0.39	0.20	4.07	1.56	0.47	0.66	1.71	1.53
34	Ix	Intron	0	0.90	0.00	0.70	0.00	8.23	0.58	0.00	3.10	2.13	2.43	0.00	0.52	0.00	3.62	4.26	0.00	1.26	2.44	6.73	1.16	3.01	0.76	0.00	0.00	0.00	0.66	0.77	2.06	1.69
35	Ix_SR1	SilentIntronRegion	0	0.91	0.00	0.71	0.00	8.30	0.58	0.00	3.08	2.14	2.45	0.00	0.53	0.00	3.64	4.25	0.00	1.26	2.46	6.79	1.17	3.03	0.77	0.00	0.00	0.00	0.67	0.78	2.08	1.70
36	Ix	Intron	0	3.70	3.13	0.36	3.87	1.05	2.67	0.87	0.40	2.84	3.74	1.03	2.20	0.42	2.19	9.80	3.10	6.92	2.28	3.10	0.51	4.31	0.39	0.39	4.64	1.39	0.51	0.59	1.58	1.87
37	Ix_SR2	SilentIntronRegion	0	2.67	1.43	1.05	0.00	1.69	2.16	0.70	0.00	3.54	1.18	0.09	2.34	0.11	2.55	10.93	3.41	7.26	3.04	3.33	0.00	3.31	0.00	1.25	5.97	0.66	0.55	0.00	1.13	2.28
38	Ix_AR2	ActiveIntronRegion	0	5.56	5.53	0.11	6.05	0.00	4.85	2.03	0.00	4.90	7.51	1.78	2.96	0.34	3.76	12.24	5.48	12.85	3.69	2.37	0.97	6.99	0.42	0.00	8.19	2.85	1.11	1.93	2.97	3.79
39	Ix_AR1	ActiveIntronRegion	0	3.02	2.57	0.00	5.24	1.38	1.31	0.07	1.04	0.64	2.78	1.18	1.46	0.74	0.64	6.88	0.94	1.87	0.55	3.44	0.56	2.95	0.67	0.00	0.69	0.81	0.00	0.00	0.83	0.00
40	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.35	2.19	6.55	3.56	0.00	1.63	0.00	0.93	0.00	3.44	5.11	0.00	8.09	3.14	4.01	2.29	0.00	5.92	1.40	0.00	0.00	0.00	0.00
41	ER4a	ExonRegion	1	412.68	338.57	61.24	589.44	816.99	295.25	575.70	224.74	239.44	99.19	96.60	113.82	179.11	103.14	884.10	148.04	95.42	113.72	839.83	289.81	358.44	111.81	63.14	151.58	84.25	37.79	67.94	58.58	102.42
42	E4_Da	KnownBoundary	0	19.52	19.00	4.04	31.92	39.20	28.78	49.32	27.47	25.06	7.07	22.43	20.66	23.02	8.69	60.19	6.58	15.24	4.62	105.20	39.36	28.68	9.04	3.74	24.40	0.00	2.15	40.06	6.47	11.65
43	ER4b	ExonRegion	0	5.89	6.23	2.75	14.83	24.94	8.36	17.30	13.74	10.70	4.30	6.37	8.42	4.78	3.44	24.89	4.74	5.69	3.09	12.49	8.78	7.44	5.84	1.39	7.39	2.46	5.29	2.66	4.78	3.88