Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-511P7.1	Gene	0	12.84	12.75	52.40	6.74	14.46	67.09	7.01	6.40	8.10	15.13	1.96	4.30	1.66	39.01	8.84	35.46	30.96	49.16	47.43	36.70	12.60	2.75	5.60	43.18	105.24	54.78	17.12	4.67	41.20
2	477392	Transcript	0	6.64	4.40	20.58	1.76	6.03	26.83	3.33	1.99	2.72	5.12	0.97	1.49	1.10	18.56	2.72	16.67	16.26	20.70	19.12	15.11	5.81	1.05	2.41	19.51	42.00	25.19	5.46	1.72	16.62
3	486954	Transcript	0	1.66	1.28	23.90	0.00	2.65	19.42	1.79	2.26	2.24	1.56	0.28	0.24	0.79	11.52	0.00	3.77	5.62	6.72	2.97	14.29	0.81	0.00	1.87	2.25	39.05	12.73	3.06	0.81	17.44
4	ER1a	ExonRegion	0	0.00	0.00	2.59	0.00	0.52	4.43	0.00	0.07	0.00	0.07	0.00	0.00	0.00	1.97	0.00	6.61	1.65	0.92	2.82	1.83	0.98	0.00	1.57	3.44	3.06	10.41	2.64	0.00	0.17
5	E1_Ab	KnownBoundary	0	0.00	0.00	1.40	0.00	0.00	1.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.59	0.00	0.00	1.40	9.25	8.09	0.00	0.00	0.00	2.27	2.75	5.04	1.93	6.86	0.00	1.25
6	ER1b	ExonRegion	0	8.70	8.16	114.55	18.47	42.37	96.57	3.12	11.33	3.67	24.72	0.00	7.75	0.00	56.59	5.66	57.72	36.54	93.78	58.52	41.85	12.07	1.77	13.90	23.79	141.16	134.03	37.48	10.64	88.11
7	E1a_E2a	KnownJunction	0	0.00	0.00	54.17	0.00	0.00	20.95	0.00	0.00	2.89	2.04	0.00	0.00	0.00	15.11	0.00	0.00	9.57	4.62	0.00	8.27	1.60	0.00	0.00	0.00	26.33	8.97	0.00	2.16	16.34
8	E1a_E3a	KnownJunction	0	2.36	0.00	6.38	0.00	0.00	6.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.68	0.00	11.78	13.33	4.62	0.00	8.27	3.25	0.00	2.12	4.67	0.00	16.39	0.00	0.00	14.23
9	E1a_E5a	NovelJunction	0	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.71	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1	Intron	0	0.20	1.36	0.32	0.00	0.46	5.74	0.00	0.00	0.11	0.69	0.11	0.35	0.18	2.96	1.04	4.68	0.99	2.59	2.12	0.26	0.00	0.00	0.17	1.23	0.54	4.03	0.00	0.00	1.20
11	I1_SR1	SilentIntronRegion	0	0.20	1.36	0.32	0.00	0.46	5.74	0.00	0.00	0.11	0.69	0.11	0.35	0.18	2.96	1.04	4.68	0.99	2.59	2.12	0.26	0.00	0.00	0.17	1.23	0.54	4.03	0.00	0.00	1.20
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.35	0.00	2.75	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.70	2.15	0.00	0.00	0.00
13	ER2a	ExonRegion	0	4.97	3.85	14.51	0.00	7.94	13.56	3.07	2.69	0.47	2.65	0.85	0.73	0.40	10.81	0.00	11.31	4.68	15.52	8.91	19.72	0.84	0.00	1.29	3.93	41.00	14.86	3.38	0.28	9.68
14	E2_Da	NovelBoundary	0	5.72	0.00	4.04	0.00	0.00	12.20	0.00	2.24	3.11	14.66	0.00	0.00	0.00	14.42	0.00	13.16	15.89	10.02	16.18	3.89	2.05	0.00	4.19	5.44	55.96	10.13	5.86	0.00	11.32
15	E2a_E3a	KnownJunction	0	0.00	0.00	3.04	0.00	0.00	23.75	2.29	4.08	3.35	0.00	0.00	0.00	1.97	8.64	0.00	0.00	2.61	0.00	0.00	14.89	0.00	0.00	4.33	2.81	49.82	14.38	5.81	0.00	26.31
16	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00
17	I2	Intron	0	2.02	0.94	3.15	0.00	2.47	11.34	0.00	0.17	0.71	1.83	0.05	0.53	0.09	6.47	0.68	8.84	6.11	11.12	5.65	2.43	1.31	0.12	0.17	3.71	4.57	4.62	0.17	0.11	1.91
18	I2_SR1	SilentIntronRegion	0	2.02	0.94	3.15	0.00	2.47	11.35	0.00	0.17	0.71	1.83	0.05	0.53	0.09	6.47	0.68	8.84	6.11	11.13	5.66	2.43	1.31	0.12	0.17	3.71	4.57	4.63	0.17	0.11	1.91
19	E3_Aa	NovelBoundary	0	5.49	0.00	9.72	0.00	0.00	17.46	0.00	0.00	1.40	0.00	0.00	1.60	0.00	15.02	8.37	20.96	28.41	9.25	16.18	2.98	0.00	0.00	0.00	10.77	16.67	3.48	0.00	0.00	2.05
20	ER3a	ExonRegion	0	9.02	4.58	63.43	5.31	14.76	54.47	5.28	5.87	4.01	13.27	0.77	5.86	1.04	35.66	4.36	26.37	21.84	52.57	24.69	31.60	9.50	1.36	2.83	31.34	96.77	48.95	13.70	2.40	31.92
21	E3_Da	KnownBoundary	0	11.27	8.24	43.10	0.00	19.31	22.02	5.84	4.23	2.65	5.75	0.00	4.40	1.31	26.37	0.00	21.04	15.31	55.48	24.28	8.02	1.48	0.00	2.51	18.84	79.56	25.96	0.00	4.36	10.30
22	ER3b	ExonRegion	0	14.52	8.19	60.11	2.73	11.65	49.32	6.05	4.85	3.62	9.63	2.01	4.75	2.65	35.56	2.63	26.14	25.55	43.65	32.20	37.67	8.82	3.09	4.62	29.12	97.69	47.65	11.15	4.34	26.67
23	E3_Db	NovelBoundary	0	0.00	0.00	5.71	0.00	0.00	8.98	0.00	0.00	1.49	0.00	0.00	1.54	0.00	8.35	0.00	3.82	8.19	9.25	0.00	15.46	7.86	0.00	0.00	8.08	9.81	11.72	0.00	0.00	4.82
24	E3b_E4a	KnownJunction	0	2.77	0.00	3.69	0.00	0.00	4.91	2.63	0.00	0.00	0.00	0.00	0.00	0.00	7.75	0.00	0.00	4.64	4.62	0.00	0.00	1.93	0.00	0.00	0.00	11.25	5.84	0.00	0.00	5.68
25	E3b_E5a	NovelJunction	0	10.09	3.97	79.35	19.84	14.00	56.36	5.84	4.73	1.43	10.19	0.00	0.00	0.00	28.87	0.00	14.15	26.94	13.87	24.28	57.89	5.37	6.76	11.72	33.08	97.52	61.50	2.34	6.87	44.30
26	I3	Intron	0	2.12	0.22	4.35	0.00	1.46	7.96	0.23	0.34	0.69	2.02	0.20	0.74	0.00	8.33	2.08	8.04	8.15	13.52	7.35	1.93	1.65	0.13	0.57	7.04	9.81	9.49	0.27	0.27	2.73
27	I3_SR1	SilentIntronRegion	0	2.15	0.24	4.39	0.00	1.40	7.08	0.25	0.38	0.61	1.82	0.19	0.73	0.00	8.02	1.67	7.48	7.79	13.20	5.69	1.84	1.44	0.08	0.63	6.04	9.31	9.08	0.22	0.15	2.33
28	I3_AR1	ActiveIntronRegion	0	1.91	0.00	3.93	0.00	2.18	17.71	0.00	0.00	1.54	4.28	0.27	0.86	0.00	11.76	6.53	14.28	12.15	17.15	25.48	2.90	4.03	0.71	0.00	18.05	15.26	14.08	0.82	1.65	7.04
29	E4_Aa	NovelBoundary	0	2.77	0.00	6.60	0.00	0.00	21.37	0.00	0.00	2.77	5.27	1.61	1.23	0.00	17.68	0.00	10.48	9.61	18.37	24.28	12.32	5.66	2.24	0.00	35.89	20.00	10.51	0.00	0.00	2.05
30	ER4a	ExonRegion	0	7.73	1.73	8.99	0.00	7.47	25.24	1.69	0.52	1.85	3.87	0.23	1.02	1.10	17.49	1.24	19.54	20.38	23.73	20.49	6.73	6.02	0.00	0.98	22.26	35.85	23.20	1.02	1.31	14.56
31	E4_Da	NovelBoundary	0	2.71	0.00	9.02	0.00	0.00	20.91	0.00	0.00	0.00	1.68	0.00	0.00	0.00	12.98	8.97	7.11	10.42	10.02	0.00	0.00	0.00	0.00	2.51	17.29	8.98	6.35	0.00	0.00	6.11
32	E4a_E5a	KnownJunction	0	2.24	0.00	5.28	0.00	7.07	6.37	2.86	0.00	0.00	1.48	1.42	0.00	1.82	8.22	0.00	6.12	6.39	10.02	8.09	3.72	1.64	0.00	0.00	13.46	12.12	8.11	0.00	0.00	0.00
33	I4	Intron	0	2.35	3.28	3.21	0.00	0.00	4.90	0.55	1.01	0.77	0.40	0.00	0.51	0.00	5.21	1.26	5.74	3.27	9.51	7.88	0.00	2.35	0.00	0.50	11.80	12.15	8.62	0.00	0.45	1.83
34	I4_AR1	ActiveIntronRegion	0	2.38	3.32	3.24	0.00	0.00	4.95	0.56	1.02	0.78	0.40	0.00	0.51	0.00	5.26	1.28	5.80	3.31	9.61	7.97	0.00	2.37	0.00	0.50	11.91	12.28	8.71	0.00	0.45	1.85
35	E5_Aa	NovelBoundary	0	0.00	4.36	10.14	0.00	0.00	12.28	0.00	0.00	1.19	1.88	0.00	0.00	0.00	14.65	0.00	11.32	9.12	0.00	8.09	4.05	0.00	0.00	0.00	13.70	18.90	5.45	0.00	0.00	3.53
36	ER5a	ExonRegion	0	16.82	20.91	57.02	9.61	15.51	91.33	10.10	8.46	13.58	20.82	3.09	4.69	2.13	49.24	15.19	46.50	41.92	57.36	70.24	47.53	18.03	4.23	7.61	63.66	134.02	64.72	23.41	6.40	55.00
37	IG8	Intergenic	0	2.32	3.03	14.50	0.39	1.06	10.62	0.33	0.75	2.35	2.15	0.26	0.65	0.11	9.82	0.69	6.49	7.22	10.61	9.06	4.68	1.00	0.00	0.83	20.75	29.15	20.12	2.72	0.62	9.89
38	IG8_SR1	SilentIntergenicRegion	0	2.77	3.63	17.27	0.46	1.26	12.56	0.39	0.89	2.59	2.47	0.31	0.72	0.13	11.62	0.68	7.46	8.53	12.67	10.62	5.59	1.20	0.00	0.99	24.58	34.60	23.89	3.25	0.74	11.77
39	IG8_SR2	SilentIntergenicRegion	0	0.00	0.00	0.28	0.00	0.00	0.69	0.00	0.00	1.12	0.48	0.00	0.30	0.00	0.60	0.77	1.53	0.50	0.00	1.06	0.00	0.00	0.00	0.00	1.08	1.19	0.79	0.00	0.00	0.22