Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CTA-313A17.2	Gene	0	0.00	0.00	0.16	1.41	0.00	0.95	1.39	3.98	0.27	0.14	0.00	0.12	0.00	0.27	36.41	196.39	2.79	28.46	0.00	1.35	5.19	23.21	23.82	0.21	4.07	30.12	10.62	15.54	188.02
2	435289	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.94	5.80	0.00	0.11	0.00	0.00	0.00	0.20	1.11	0.00	0.08	0.02	0.00	0.49	2.71
3	433904	Transcript	0	0.00	0.00	0.36	0.00	0.00	0.49	2.43	2.70	0.28	0.00	0.00	0.00	0.00	0.26	29.24	205.27	1.15	33.67	0.00	0.71	5.25	24.44	28.33	0.00	2.10	35.56	17.64	10.70	243.85
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.10	0.00	0.00	0.00	0.00	0.00	0.00	0.56	0.00	0.00	0.00	0.00	0.50	3.28
5	Ix	Intron	0	16.58	13.56	2.16	20.25	6.59	14.68	7.18	5.42	22.13	17.72	3.07	30.34	4.05	11.30	53.26	56.41	33.53	28.89	16.67	14.70	29.24	3.76	3.55	18.75	16.05	6.85	11.47	31.31	45.16
6	Ix_AR3	ActiveIntronRegion	0	0.00	9.85	1.68	0.00	0.00	13.06	0.00	0.00	11.24	9.38	2.98	10.51	0.00	0.91	64.41	34.16	8.01	10.92	4.53	0.00	4.99	1.80	0.00	10.76	0.00	0.00	0.00	0.82	8.05
7	Ix_AR2	ActiveIntronRegion	0	22.78	20.66	2.32	26.94	6.82	22.37	11.47	7.31	31.98	25.53	4.59	44.88	5.83	16.12	79.72	82.23	47.72	43.93	23.30	22.04	44.54	5.80	5.44	28.35	23.17	6.92	19.07	43.75	62.45
8	Ix_AR1	ActiveIntronRegion	0	4.63	0.00	0.00	1.54	0.00	3.26	2.44	0.00	6.74	5.62	3.13	4.82	0.82	5.25	4.42	6.93	8.54	4.74	0.00	4.73	12.76	0.00	0.00	0.00	8.28	3.31	0.00	8.41	13.00
9	Ix_SR1	SilentIntronRegion	0	5.39	7.56	1.75	9.82	1.71	5.34	1.79	2.57	13.59	8.85	1.67	9.06	2.61	7.85	23.51	22.40	17.66	11.72	13.39	7.51	16.28	0.63	1.26	7.51	6.91	8.35	1.92	13.71	32.63
10	Ix	Intron	0	13.09	16.86	1.38	29.58	6.45	13.39	6.99	4.25	17.21	14.54	5.30	17.10	1.29	4.86	44.70	56.02	18.72	33.28	25.84	7.48	27.07	3.27	6.57	11.01	12.27	7.26	5.74	15.34	26.78
11	Ix_SR1	SilentIntronRegion	0	14.31	16.96	1.34	26.80	9.13	12.85	9.69	5.41	22.46	15.42	5.40	17.45	0.69	5.92	44.39	60.42	22.72	33.95	25.57	8.62	25.90	3.37	6.28	13.21	14.88	7.55	6.36	20.46	31.73
12	Ix_AR1	ActiveIntronRegion	0	11.29	16.99	1.47	34.67	2.15	14.49	2.66	2.43	8.87	13.33	5.23	16.83	2.28	3.18	45.96	49.74	12.46	32.70	26.61	5.72	29.47	3.17	7.16	7.57	8.16	6.91	4.83	7.17	19.09
13	E2a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.24	0.00	0.00	0.10	0.00	0.00	0.45
15	Ix	Intron	0	27.81	11.50	4.41	32.22	7.49	14.39	8.41	7.28	21.25	24.05	6.79	34.90	3.46	19.53	37.95	56.47	52.43	41.40	16.94	13.26	34.70	5.09	4.48	21.25	21.73	8.97	7.98	32.15	37.99
16	Ix_AR3	ActiveIntronRegion	0	6.04	1.56	0.00	0.00	0.00	3.10	0.00	3.11	1.10	3.25	1.01	2.09	0.00	0.77	6.99	9.89	1.69	6.51	3.60	2.11	4.82	0.51	1.02	3.64	5.24	2.23	1.55	6.43	10.77
17	Ix_AR2	ActiveIntronRegion	0	50.49	21.22	7.30	55.72	10.22	27.37	14.34	10.57	39.05	41.09	12.67	63.81	6.18	38.15	57.86	99.27	94.91	70.26	25.21	22.52	58.25	9.59	7.24	37.05	36.15	14.47	13.03	53.51	56.31
18	Ix_SR1	SilentIntronRegion	0	6.45	2.70	0.36	4.36	0.15	0.40	2.64	4.38	1.27	11.19	1.92	10.54	0.33	2.61	8.33	22.12	16.40	7.02	3.21	3.10	17.26	0.52	0.70	10.01	6.00	1.01	4.24	5.28	22.86
19	Ix_AR1	ActiveIntronRegion	0	28.80	11.63	4.65	26.85	6.16	1.70	13.23	13.01	5.63	24.34	6.84	35.14	3.91	14.23	34.64	49.85	60.37	42.01	23.58	13.91	49.60	4.67	9.04	18.00	23.26	7.84	5.88	27.39	51.09
20	Ix	Intron	0	0.84	0.15	0.00	0.94	0.64	0.09	0.00	0.12	0.55	0.95	0.00	0.16	0.60	0.15	18.95	16.39	0.49	2.08	0.42	0.00	4.02	1.89	1.18	0.00	5.71	0.82	1.32	12.17	13.26
21	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	1.07	0.00	1.70	0.00	2.17	0.97	1.98
22	Ix_SR1	SilentIntronRegion	0	0.95	0.17	0.00	1.06	0.72	0.10	0.00	0.14	0.62	1.07	0.00	0.18	0.67	0.17	21.40	18.14	0.55	2.35	0.47	0.00	4.53	2.13	1.20	0.00	6.24	0.93	1.22	13.61	14.72
23	I2_AR1	ActiveIntronRegion	0	0.00	2.91	0.00	6.05	0.77	0.00	0.54	1.49	1.08	0.81	0.00	2.74	0.35	1.80	14.22	7.40	0.00	4.36	2.44	0.00	1.59	5.75	4.24	0.00	1.57	1.69	1.62	1.82	5.11
24	I2_SR1	SilentIntronRegion	0	10.81	7.21	7.40	12.00	42.67	5.93	12.04	11.23	15.69	11.96	4.10	7.06	3.27	11.35	104.59	50.18	11.37	22.43	15.21	6.07	16.86	11.63	9.81	11.55	46.40	18.69	32.63	45.34	55.79
25	I2_SR2	SilentIntronRegion	0	0.00	2.65	0.00	0.00	4.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.03	2.04	0.00	0.00	0.00	2.27	0.00	1.48	0.00	0.00	0.00	1.29	0.00	0.00	0.00
26	Ix_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.01	0.00
27	I2_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.27	0.99	1.85	0.38	0.21	0.00	0.00	1.10	1.39	0.00	0.00	1.13	0.00	0.00	2.94	5.67
28	E3_Aa	NovelBoundary	0	13.51	4.75	4.16	0.00	5.75	5.10	4.46	13.14	8.25	4.07	1.49	14.67	0.00	5.23	8.97	30.83	27.69	14.51	0.00	7.86	7.82	1.90	2.31	11.07	10.84	7.85	0.00	31.36	35.89
29	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.01	0.00	0.00	0.00	0.00	0.00	4.48	7.37	0.00	1.85	0.00	0.02	0.17	0.92	0.91	0.00	0.00	2.09	0.00	1.45	8.75
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	I3	Intron	0	0.13	0.00	0.10	0.00	0.00	0.08	0.24	0.33	0.14	0.09	0.00	0.47	0.23	0.16	6.37	27.81	0.89	4.36	0.38	0.29	1.72	2.06	1.63	0.39	0.34	2.27	2.53	3.53	16.53
32	I3_SR1	SilentIntronRegion	0	0.13	0.00	0.10	0.00	0.00	0.08	0.24	0.33	0.14	0.09	0.00	0.47	0.23	0.16	6.38	27.88	0.89	4.37	0.37	0.29	1.72	2.06	1.64	0.39	0.34	2.27	2.54	3.53	16.57
33	E4_Ab	NovelBoundary	0	16.87	4.85	8.12	70.53	6.78	15.08	0.00	17.92	23.11	11.90	2.78	34.82	4.84	7.02	113.41	273.87	20.37	56.25	7.87	8.19	23.99	76.86	41.17	8.13	17.58	12.96	2.39	53.42	211.88
34	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.05	1.12	0.00	0.00	0.00	0.00	0.00	17.60	116.90	0.00	25.86	0.00	2.81	6.11	38.80	14.98	0.00	4.90	6.14	0.00	1.94	120.67
35	ER4b	ExonRegion	0	0.00	0.00	0.67	8.92	0.00	3.77	2.38	13.72	0.74	0.00	0.00	0.77	0.00	0.95	125.74	868.29	2.71	105.07	0.00	0.96	23.36	84.42	84.30	1.34	15.97	118.16	27.52	22.30	536.30
36	E4a_E5a	KnownJunction	0	0.00	0.00	1.45	0.00	0.00	1.96	9.73	4.73	0.00	0.00	0.00	0.00	0.00	1.04	94.88	696.83	4.59	106.98	0.00	0.00	14.72	58.05	97.42	0.00	3.49	134.02	70.57	39.40	845.97
37	E4_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.65
38	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER4c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.20	20.25	0.00	0.68	0.00	0.00	0.00	0.00	5.88	0.00	0.00	0.00	0.00	0.82	10.74
40	I4	Intron	0	3.86	3.57	0.23	5.96	0.68	2.29	5.59	2.04	6.14	3.40	2.80	5.65	0.36	2.13	17.05	17.40	2.89	11.21	11.95	2.46	9.69	0.25	1.50	3.27	4.36	3.70	5.58	8.36	11.86
41	I4_SR1	SilentIntronRegion	0	3.88	3.59	0.23	5.99	0.68	2.30	5.62	2.05	6.17	3.42	2.82	5.68	0.36	2.14	17.14	17.49	2.90	11.27	12.02	2.47	9.74	0.25	1.51	3.29	4.38	3.72	5.61	8.40	11.93
42	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.17	17.75	24.83	0.00	0.00	0.00	0.00	2.48	0.00	0.00	1.93	0.00	0.00	0.00	15.05
43	ER5a	ExonRegion	0	0.00	0.00	0.27	0.00	0.00	1.61	2.82	7.19	0.51	0.65	0.00	0.00	0.00	0.54	67.80	232.72	10.84	47.75	0.00	4.97	5.58	37.14	43.46	0.00	6.20	49.29	28.80	52.54	437.74
44	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.47	7.59	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.48	0.00	0.00	1.63	1.79
45	IG44	Intergenic	0	0.00	0.34	0.00	0.76	0.52	0.00	0.00	0.00	0.00	0.00	0.00	0.19	0.00	0.00	4.94	26.93	0.47	6.17	0.34	0.00	0.45	0.57	1.72	0.45	1.21	3.32	0.58	1.72	11.94
46	IG44_SR1	SilentIntergenicRegion	0	0.00	0.34	0.00	0.76	0.52	0.00	0.00	0.00	0.00	0.00	0.00	0.20	0.00	0.00	4.96	27.04	0.47	6.20	0.34	0.00	0.45	0.58	1.73	0.46	1.21	3.33	0.58	1.72	11.99