Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ATP6V1F	Gene	0	1600.97	697.74	908.78	1270.21	2448.18	681.40	1589.25	984.31	1609.18	675.13	398.95	652.92	929.18	624.79	1208.22	521.69	748.68	525.47	533.81	2036.84	453.63	2409.58	744.68	796.61	1192.69	1432.84	897.87	2259.46	830.66
2	249289	Transcript	0	2612.81	947.31	353.04	1149.05	2093.03	834.60	1268.59	1415.16	1652.61	692.56	364.67	586.98	949.52	669.41	1135.54	787.48	579.09	590.50	576.42	3097.92	503.51	4064.95	603.43	1048.52	1352.82	951.82	600.36	1357.16	695.31
3	492758	Transcript	0	27.90	13.37	7.40	25.80	14.81	12.91	17.21	8.07	23.77	12.56	9.97	13.96	17.39	8.54	14.28	10.62	14.00	9.61	11.14	22.34	6.63	31.58	12.03	22.64	34.98	35.40	17.43	42.24	10.89
4	ER1a	ExonRegion	0	957.97	363.67	418.06	1721.34	3021.97	373.75	789.20	479.03	448.07	307.54	198.82	359.64	484.55	163.62	529.22	542.99	342.67	407.86	400.91	870.67	243.55	1568.06	522.24	245.45	442.60	672.64	558.73	1128.42	402.75
5	E1_Ab	KnownBoundary	0	3765.57	1294.39	1533.16	6158.87	11911.59	1118.38	2836.48	1789.18	1781.84	1200.48	752.49	1325.61	1847.13	668.55	1977.25	2057.66	1383.49	1307.16	1212.97	3255.37	829.20	6064.52	1986.49	1066.15	1989.73	2519.10	2445.42	3993.73	1708.28
6	ER1b	ExonRegion	0	2058.02	698.77	1546.00	1741.89	3214.36	665.12	1771.67	1313.75	1906.43	586.98	354.76	834.47	1214.43	637.73	966.42	568.61	1068.67	486.22	432.93	2167.65	454.44	3537.25	793.96	833.09	1212.53	2113.10	1068.86	3427.30	1250.16
7	E1_Da	NovelBoundary	0	8.32	0.00	0.00	0.00	0.00	1.50	2.40	2.54	7.19	0.00	0.00	1.54	0.00	0.91	0.00	0.00	8.42	4.62	0.00	7.03	0.00	4.42	0.00	0.00	3.03	0.00	2.53	0.00	0.00
8	E1a_E2a	KnownJunction	0	36.04	11.25	2.59	9.27	0.00	8.59	8.18	14.18	25.00	3.87	13.13	4.88	7.74	6.78	0.00	10.25	12.76	0.00	0.00	7.03	7.18	36.12	6.75	14.54	18.15	16.61	0.00	8.76	0.00
9	E1a_E3a	KnownJunction	0	4267.66	1530.94	288.02	576.76	1164.09	1295.44	1747.97	2351.29	2857.15	1077.57	530.51	814.32	1414.49	1175.19	1741.85	1031.97	815.51	773.15	751.92	5325.16	763.46	6561.83	684.62	1851.59	2263.03	1230.99	641.99	1585.90	987.86
10	Ix	Intron	0	4.37	0.66	1.36	1.10	4.23	1.75	0.51	0.66	1.97	1.47	0.30	0.69	0.27	2.91	4.22	0.34	3.81	1.47	0.98	1.61	1.67	1.19	0.74	1.87	2.77	0.88	0.56	2.74	0.85
11	Ix_AR2	ActiveIntronRegion	0	3.08	0.00	2.48	0.00	0.00	2.00	0.00	3.84	3.21	1.47	0.73	1.39	2.10	0.43	4.13	0.00	4.41	1.72	0.00	3.40	1.68	0.00	1.62	7.55	0.53	0.77	0.51	2.72	0.16
12	Ix_AR3	ActiveIntronRegion	0	2.14	0.00	1.87	0.00	0.42	1.37	0.00	0.61	1.12	0.84	1.19	0.10	0.87	1.81	3.27	0.00	2.00	0.00	0.00	5.62	1.43	0.00	0.00	4.30	2.14	0.00	1.83	1.63	0.78
13	Ix_SR1	SilentIntronRegion	0	2.14	0.00	1.12	0.00	4.98	1.37	0.29	0.00	1.12	0.00	0.51	0.00	0.00	3.11	0.00	0.00	2.00	0.00	2.59	5.62	1.43	0.00	0.00	1.54	2.86	0.00	1.83	1.63	1.34
14	Ix_AR4	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	4.98	1.37	2.02	0.00	0.48	0.62	0.17	1.24	0.00	4.15	0.00	0.00	1.00	0.00	4.53	3.21	1.43	0.00	0.00	0.00	2.86	0.00	1.83	1.16	1.34
15	Ix_SR2	SilentIntronRegion	0	0.00	1.37	0.65	0.00	4.98	0.57	2.02	0.00	0.00	1.44	1.19	1.24	0.00	4.54	0.00	0.00	1.00	0.00	4.53	2.58	0.95	0.00	0.00	0.00	1.79	0.00	1.22	0.00	3.13
16	Ix_AR5	ActiveIntronRegion	0	4.76	3.28	1.12	0.00	4.98	0.00	2.02	0.00	0.75	1.44	1.19	1.24	0.00	5.44	5.60	0.00	0.56	0.00	4.53	0.00	0.00	0.60	0.00	0.00	1.91	0.00	0.00	0.91	4.03
17	Ix_SR3	SilentIntronRegion	0	5.55	1.05	0.71	0.63	2.68	1.80	0.43	0.32	2.73	1.84	0.37	0.53	0.23	3.19	3.95	0.00	3.13	1.85	0.31	0.66	2.25	0.94	0.63	1.88	3.52	0.69	0.64	3.12	0.64
18	Ix	Intron	0	0.00	3.01	0.00	0.00	0.00	1.93	0.00	0.86	2.63	0.68	0.00	1.16	0.00	0.42	0.00	0.00	2.79	3.76	2.99	0.93	0.67	0.00	0.00	2.01	0.00	2.21	0.00	0.76	0.94
19	Ix_SR1	SilentIntronRegion	0	0.00	3.07	0.00	0.00	0.00	1.97	0.00	0.88	2.68	0.69	0.00	1.18	0.00	0.43	0.00	0.00	2.84	3.83	3.05	0.92	0.68	0.00	0.00	2.05	0.00	2.25	0.00	0.78	0.95
20	E2_Aa	NovelBoundary	0	5.19	9.60	4.34	0.00	0.00	0.00	0.00	0.00	4.63	3.60	3.04	1.36	0.00	6.58	0.00	0.00	4.03	0.00	8.09	0.00	3.73	7.10	0.00	0.00	3.14	3.82	0.00	0.00	1.68
21	ER2a	ExonRegion	0	16.92	11.69	1.14	3.57	5.52	13.76	12.60	4.52	19.57	10.78	5.54	6.82	7.87	8.83	6.73	17.53	13.54	10.07	4.80	8.10	7.30	15.32	17.09	11.86	25.40	23.71	4.69	19.81	5.05
22	E2_Da	NovelBoundary	0	0.00	4.65	0.00	0.00	0.00	1.76	0.00	2.54	0.00	0.00	0.00	1.45	0.00	0.00	7.57	0.00	11.61	4.62	0.00	0.00	2.05	0.00	0.00	5.68	5.00	4.29	0.00	2.11	0.00
23	E2a_E3a	KnownJunction	0	5.07	4.27	2.32	9.92	13.85	1.80	15.79	2.54	8.92	8.15	5.76	7.02	5.89	2.24	0.00	7.11	15.69	9.25	8.09	3.97	2.05	11.77	13.45	6.10	10.61	30.55	21.07	31.18	11.65
24	Ix	Intron	0	1.26	0.95	2.46	0.00	0.00	2.03	0.00	0.00	2.64	2.98	0.35	0.73	0.00	2.41	1.36	1.46	3.08	3.60	1.88	2.79	0.00	1.06	0.53	0.63	0.42	3.24	0.00	0.96	0.59
25	Ix_AR1	ActiveIntronRegion	0	1.28	0.96	2.49	0.00	0.00	2.05	0.00	0.00	2.65	3.01	0.35	0.74	0.00	2.43	1.38	1.48	3.12	3.64	1.91	2.83	0.00	1.08	0.54	0.64	0.43	3.28	0.00	0.97	0.60
26	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	2.75	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	0.00	3.80	4.62	0.00	4.13	1.52	0.00	0.00	4.96	4.74	0.00	0.00	0.00	1.68
27	ER3a	ExonRegion	0	1843.36	878.74	941.37	1264.68	2536.42	860.43	1949.80	1136.64	1994.31	888.03	519.34	758.64	1075.49	810.53	1623.48	593.99	842.90	652.44	686.65	2558.98	570.12	2606.09	898.09	1020.25	1525.20	1587.66	1059.88	2463.12	911.34
28	ER3b	ExonRegion	1	53.59	26.28	23.56	80.44	39.85	27.49	32.25	11.05	41.57	27.43	15.47	37.11	48.06	16.33	50.41	7.59	14.02	19.10	31.68	70.27	9.98	63.10	10.85	58.08	85.76	70.72	43.96	109.21	26.84