Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC004893.2	Gene	0	2.80	5.12	8.93	3.55	0.81	5.26	1.21	2.51	8.10	6.52	2.18	22.98	3.16	9.60	7.93	25.22	9.54	4.50	6.52	2.99	6.79	3.41	4.59	9.17	5.58	8.35	8.30	17.57	13.52
2	360902	Transcript	0	3.77	7.97	13.52	6.41	0.37	5.49	0.99	5.54	11.94	5.94	1.67	26.81	5.40	11.34	16.71	37.28	11.21	7.02	9.58	3.85	8.22	4.21	4.51	18.99	9.30	12.59	9.68	21.78	23.37
3	ER1a	ExonRegion	0	1.70	4.67	12.70	4.70	0.42	7.20	1.09	2.59	9.52	8.52	3.21	31.10	3.41	12.75	5.10	33.04	14.01	4.66	6.64	2.65	8.49	4.27	6.01	9.33	5.86	9.28	11.69	23.43	16.86
4	E1_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	0.00	1.84	2.63	0.00	1.55	1.84	2.91	4.10	0.00	5.56	0.00	17.52	4.57	0.00	0.00	0.00	1.80	0.00	0.00	8.97	0.00	0.00	2.48	4.22	2.05
5	E1a_E2a	KnownJunction	0	0.00	4.07	26.66	0.00	0.00	8.21	0.00	9.36	19.25	5.79	2.53	34.25	6.24	11.21	18.94	31.13	16.52	18.49	0.00	4.13	4.93	4.96	4.58	32.96	5.15	30.43	25.79	28.22	51.57
6	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	1.26	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
7	I1	Intron	0	0.61	1.46	0.85	1.63	0.00	1.01	0.34	0.83	4.99	2.13	0.47	3.08	0.40	1.66	2.39	1.75	2.88	0.45	1.81	1.94	2.51	0.00	0.31	1.46	1.94	0.18	0.73	2.68	5.91
8	I1_SR1	SilentIntronRegion	0	0.61	1.47	0.86	1.63	0.00	1.02	0.34	0.84	5.01	2.13	0.47	3.09	0.41	1.67	2.40	1.76	2.89	0.46	1.82	1.95	2.52	0.00	0.31	1.47	1.95	0.18	0.73	2.69	5.94
9	E2_Aa	NovelBoundary	0	28.55	67.19	43.48	30.41	6.93	37.52	8.35	16.57	50.95	91.04	34.45	201.08	67.80	104.65	69.36	77.72	97.15	120.21	32.37	57.72	54.87	28.68	74.02	54.85	97.67	51.63	49.50	86.99	275.00
10	ER2a	ExonRegion	0	6.06	9.29	13.91	4.49	0.00	6.06	0.63	5.49	13.81	5.90	2.29	33.40	6.74	10.62	9.00	40.60	11.85	9.26	8.89	7.36	15.94	8.72	7.53	21.18	7.87	20.79	10.75	31.75	32.86
11	E2_Da	NovelBoundary	0	2.54	0.00	3.94	0.00	0.00	3.91	0.00	0.00	3.78	10.03	0.00	5.69	0.00	1.86	7.57	18.13	4.66	0.00	0.00	0.00	4.57	3.99	0.00	15.13	4.47	3.26	0.00	3.41	5.02
12	E2a_E3a	KnownJunction	0	0.00	0.00	6.98	0.00	0.00	1.65	0.00	0.00	7.22	3.56	0.00	19.55	0.00	3.86	0.00	17.59	5.47	9.25	0.00	0.00	7.18	2.48	0.00	2.87	1.93	2.19	2.04	10.11	25.85
13	E2a_E4a	NovelJunction	0	0.00	0.00	0.97	0.00	0.00	0.00	0.00	0.00	10.57	3.56	0.00	1.23	0.00	3.23	0.00	3.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.11
14	Ix	Intron	0	5.01	0.00	0.78	0.00	2.29	1.93	1.89	1.72	2.62	1.35	0.56	5.20	0.61	3.39	4.73	8.13	2.79	5.71	2.99	0.00	0.67	0.00	1.69	1.01	0.67	0.74	0.00	3.05	1.88
15	Ix_AR1	ActiveIntronRegion	0	5.06	0.00	0.79	0.00	2.31	1.95	1.90	1.74	2.64	1.36	0.56	5.25	0.61	3.42	4.77	8.20	2.82	5.76	3.02	0.00	0.67	0.00	1.71	1.02	0.67	0.74	0.00	3.08	1.90
16	E3_Aa	NovelBoundary	0	2.83	0.00	2.22	21.57	0.00	0.00	0.00	2.54	5.69	7.27	1.46	9.04	1.50	4.28	0.00	20.81	4.97	0.00	0.00	3.80	1.85	2.09	0.00	5.38	1.52	0.00	0.00	2.29	3.17
17	ER3a	ExonRegion	0	9.31	11.30	14.75	2.27	0.00	5.50	2.66	5.70	18.59	4.27	1.33	29.41	3.86	19.29	32.06	42.59	13.12	7.46	16.74	7.03	8.84	5.49	2.59	17.54	10.52	17.27	5.46	28.22	25.84
18	E3_Da	NovelBoundary	0	5.19	9.11	2.79	0.00	7.07	1.69	4.46	2.04	1.28	3.36	1.61	14.34	1.34	0.00	7.97	3.29	7.61	9.38	0.00	3.97	0.00	0.00	7.04	2.87	3.37	0.00	0.00	4.22	4.65
19	E3a_E4a	KnownJunction	0	5.07	12.99	27.83	10.78	0.00	6.94	0.00	12.54	9.84	3.79	1.55	34.97	9.90	19.65	52.82	70.23	19.04	9.25	32.37	0.00	13.00	6.66	9.26	34.45	19.89	5.71	10.68	35.72	29.78
20	Ix	Intron	0	3.18	6.07	1.98	2.13	0.00	2.04	0.60	2.73	2.74	3.43	2.29	10.61	1.05	5.10	4.36	5.05	3.98	4.95	6.63	0.70	2.54	0.00	0.54	2.87	4.87	1.40	0.00	2.42	2.38
21	Ix_AR1	ActiveIntronRegion	0	2.63	5.93	0.49	0.00	0.00	0.00	0.00	0.00	1.65	4.82	1.50	7.20	1.01	4.68	3.79	3.02	1.57	7.92	11.75	0.09	1.66	0.00	0.15	5.07	3.32	2.64	0.00	1.76	1.30
22	Ix_SR1	SilentIntronRegion	0	3.32	6.12	2.33	2.61	0.00	2.50	0.73	3.35	3.00	3.15	2.49	11.44	1.07	5.23	4.52	5.53	4.55	4.33	5.54	0.84	2.75	0.00	0.63	2.40	5.25	1.13	0.00	2.58	2.64
23	E4_Aa	NovelBoundary	0	2.54	0.00	1.00	0.00	0.00	1.84	0.00	0.00	1.55	15.50	0.00	5.75	0.00	4.70	0.00	7.42	8.69	4.62	0.00	3.89	1.68	0.00	0.00	7.54	7.50	0.00	0.00	0.00	0.00
24	ER4a	ExonRegion	0	5.95	19.30	20.10	11.85	2.06	8.28	3.32	6.10	19.87	12.65	7.25	60.77	14.13	22.47	27.68	72.32	18.50	9.41	17.06	11.38	15.65	6.06	9.40	35.65	20.85	14.91	23.42	36.24	31.78
25	E4_Da	NovelBoundary	0	4.66	4.85	1.54	0.00	0.00	3.41	0.00	0.00	0.00	1.68	0.00	9.76	0.00	3.12	0.00	6.58	2.34	0.00	0.00	3.89	0.00	2.38	0.00	0.00	3.64	3.35	0.00	0.00	0.00
26	E4a_E5a	KnownJunction	0	8.20	17.06	18.06	28.04	0.00	9.94	0.00	14.83	21.80	11.54	0.00	29.10	9.62	13.05	17.14	71.91	17.11	0.00	8.09	4.13	10.23	2.48	2.51	33.44	18.45	23.22	9.09	29.03	27.76
27	Ix	Intron	0	3.15	1.38	0.88	2.26	1.03	2.24	0.74	0.77	2.06	3.33	1.56	6.44	0.47	4.84	0.29	3.59	2.19	4.90	3.69	1.16	2.25	1.14	0.57	2.14	3.52	1.65	0.58	1.45	2.25
28	Ix_SR1	SilentIntronRegion	0	1.41	1.41	0.37	6.28	1.07	2.71	0.00	0.00	0.49	4.11	0.78	7.55	0.42	4.26	0.00	2.56	3.27	2.11	2.10	1.81	3.43	1.18	0.40	1.41	2.82	2.75	0.00	1.43	1.31
29	Ix_AR1	ActiveIntronRegion	0	3.75	0.54	0.60	1.37	1.71	2.25	0.94	0.75	3.25	3.26	2.36	6.56	0.30	5.49	0.00	3.91	2.54	5.26	4.10	1.56	2.26	1.47	0.68	2.70	4.28	1.65	0.00	2.29	2.17
30	Ix_SR2	SilentIntronRegion	0	3.64	2.58	1.69	0.44	0.00	1.87	1.03	1.41	1.56	2.85	1.01	5.42	0.77	4.39	0.93	3.96	0.87	6.59	4.34	0.07	1.32	0.61	0.55	1.92	2.99	0.80	1.87	0.26	3.09
31	E5_Aa	NovelBoundary	0	5.37	0.00	0.00	0.00	0.00	7.06	0.00	0.00	0.00	0.00	0.00	11.54	0.00	4.99	0.00	0.00	3.22	0.00	0.00	0.00	3.93	0.00	0.00	0.00	3.41	0.00	0.00	0.00	4.95
32	ER5a	ExonRegion	0	1.92	6.21	7.62	8.41	0.00	5.11	2.18	3.27	9.28	6.58	0.00	19.18	4.88	10.38	14.27	28.81	7.11	7.25	12.86	4.39	4.57	4.72	6.59	19.86	9.90	12.02	6.45	14.17	13.29
33	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	Ix	Intron	0	4.15	2.08	2.47	2.24	0.69	2.70	0.86	1.26	4.28	3.53	0.41	7.47	0.83	3.87	3.58	6.04	4.97	4.95	2.91	1.33	2.15	1.03	0.93	1.78	3.50	1.88	1.93	4.22	4.28
35	Ix_SR1	SilentIntronRegion	0	6.73	1.33	2.93	0.00	0.00	1.13	0.53	3.33	4.50	2.27	0.86	4.98	1.57	5.00	6.55	6.68	2.68	3.68	0.90	1.59	3.97	0.74	1.31	0.18	2.30	6.89	0.77	6.49	5.18
36	Ix_SR2	SilentIntronRegion	0	4.17	2.62	2.56	3.02	0.57	2.75	1.02	1.18	4.11	3.83	0.36	7.76	0.82	4.00	2.91	5.50	4.96	4.88	3.44	1.16	2.11	1.08	0.97	1.95	4.05	1.52	1.94	4.67	4.59
37	Ix_AR2	ActiveIntronRegion	0	4.29	0.00	3.37	0.00	4.98	5.27	0.00	1.84	5.62	2.89	0.00	8.86	0.00	2.72	0.00	13.08	8.01	5.46	0.00	5.62	0.00	0.00	0.00	0.00	5.00	0.00	3.66	0.54	8.05
38	Ix_AR3	ActiveIntronRegion	0	2.92	0.00	1.89	0.00	1.44	3.21	0.35	0.65	4.98	2.82	0.42	7.64	0.57	2.85	5.47	8.10	6.13	6.01	1.68	1.83	1.50	0.95	0.63	1.89	1.55	1.10	2.39	1.43	2.41
39	ER6a	ExonRegion	0	3.19	2.78	0.08	0.00	1.64	1.52	0.97	1.06	2.16	2.80	0.23	3.20	0.62	1.50	6.80	1.90	0.57	2.24	2.76	1.29	1.58	0.43	1.13	1.65	1.86	2.65	1.06	2.66	1.51