Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C7orf64	Gene	0	36.81	44.80	34.18	84.35	25.42	44.98	48.59	29.19	44.89	51.44	33.70	114.17	19.85	29.96	69.77	104.45	65.67	36.48	53.84	78.66	38.13	21.94	21.13	58.25	51.40	22.24	54.43	44.96	87.06
2	450580	Transcript	0	1.35	0.02	0.00	31.14	7.06	9.18	7.16	0.61	3.23	2.69	14.63	5.95	6.71	4.67	0.00	13.61	6.48	11.29	6.66	12.56	5.73	0.60	0.00	10.73	9.22	2.35	3.06	3.09	1.71
3	265732	Transcript	0	70.19	86.00	75.79	252.36	39.94	67.37	106.99	39.76	89.80	131.66	62.51	203.82	55.12	48.68	106.24	196.75	82.81	37.24	89.02	96.10	90.49	37.14	40.58	100.97	92.44	32.61	148.45	94.04	274.87
4	481551	Transcript	0	9.93	22.45	8.90	18.84	8.26	22.23	14.40	5.96	21.86	17.76	6.63	39.58	4.97	9.24	48.70	41.08	31.27	18.47	22.61	30.42	12.90	3.24	3.08	22.60	13.71	4.93	9.32	9.85	21.04
5	496410	Transcript	0	3.72	0.63	4.49	1.41	0.00	0.72	2.20	1.20	1.18	2.60	0.66	4.15	0.17	2.25	0.31	3.81	2.64	2.00	10.11	1.43	0.75	3.16	0.99	0.71	0.93	0.62	0.48	3.62	1.74
6	ER1a	ExonRegion	0	8.33	6.57	10.68	30.30	12.81	4.36	4.78	5.58	4.24	4.33	1.77	28.20	3.30	3.50	10.88	32.68	8.39	9.59	10.73	9.96	5.79	4.28	5.11	3.44	9.27	10.73	9.52	21.33	16.34
7	E1_Ab	KnownBoundary	1	18.82	12.51	20.11	61.26	45.69	10.13	16.88	13.14	9.59	13.30	5.19	47.23	6.59	6.16	33.88	81.47	14.36	13.87	24.28	16.87	15.40	10.60	11.67	7.78	19.40	19.74	14.71	49.96	25.59
8	ER1b	ExonRegion	1	70.99	53.91	156.41	363.01	80.13	64.76	113.52	73.83	51.25	100.37	66.07	303.43	40.07	60.37	55.48	206.50	171.75	61.25	78.99	144.06	71.67	49.38	72.81	45.67	107.66	106.75	147.90	222.63	347.94
9	E1_Da	KnownBoundary	0	2.77	0.00	4.43	0.00	0.00	0.00	0.00	8.56	0.00	0.00	1.61	3.40	0.00	1.11	0.00	0.00	0.00	0.00	0.00	4.05	0.00	0.00	0.00	0.00	1.44	0.00	0.00	6.87	3.70
10	E1a_E2a	KnownJunction	0	16.34	8.14	21.03	110.65	26.67	16.38	26.20	14.18	22.84	27.80	6.96	54.70	6.31	25.66	16.54	52.78	15.19	0.00	24.05	60.12	19.17	13.03	12.51	26.08	23.26	16.87	50.24	16.85	111.85
11	ER1c	ExonRegion	0	8.93	1.90	3.66	4.24	0.00	2.17	4.42	3.60	2.03	1.76	1.98	9.61	0.51	3.33	0.93	8.15	7.93	1.37	6.05	4.28	2.25	3.69	0.80	2.12	2.78	1.86	1.44	8.56	5.22
12	E1_Db	NovelBoundary	0	5.66	0.00	2.52	0.00	0.00	1.92	2.40	0.00	2.80	0.00	0.00	11.39	0.00	0.00	0.00	3.06	2.23	0.00	0.00	3.47	0.00	0.00	0.00	2.69	1.89	0.00	0.00	8.81	0.00
13	E1b_E2a	KnownJunction	0	2.24	0.00	9.82	0.00	0.00	0.00	2.17	0.00	1.52	6.03	0.00	2.83	0.00	3.41	0.00	3.29	0.00	4.62	24.28	0.00	0.00	5.79	2.17	0.00	0.00	0.00	0.00	2.29	0.00
14	I1	Intron	0	1.31	0.00	0.00	0.00	0.99	2.51	0.41	0.00	0.80	0.59	1.21	6.14	0.00	0.00	0.00	2.88	2.43	1.57	1.95	4.32	0.29	0.00	0.00	0.44	1.16	0.00	0.00	1.66	0.81
15	I1_AR1	ActiveIntronRegion	0	1.78	0.00	0.00	0.00	2.03	2.67	0.57	0.00	0.97	0.00	1.94	7.42	0.00	0.00	0.00	2.63	3.88	1.78	0.81	4.98	0.07	0.00	0.00	0.89	1.27	0.00	0.00	0.46	1.66
16	I1_AR2	ActiveIntronRegion	0	1.74	0.00	0.00	0.00	0.00	3.62	0.48	0.00	1.27	0.00	0.04	7.79	0.00	0.00	0.00	6.23	2.02	1.17	0.93	7.27	1.00	0.00	0.00	0.00	2.11	0.00	0.00	5.56	0.00
17	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	2.26	0.82	2.01	0.00	0.00	0.00	0.00	0.00	2.64	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	2.83	1.56	0.00	6.26	0.00	1.11	0.00	3.37	3.60	0.00	0.00	7.94	1.68	0.00	0.00	3.05	1.44	0.00	0.00	0.00	2.05
19	I1_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	2.89	1.19	2.47	0.00	0.00	0.00	0.00	0.00	0.55	9.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I1_AR5	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	2.89	1.19	2.10	0.00	0.00	0.00	0.00	0.00	0.00	9.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER2a	ExonRegion	0	77.43	79.35	24.63	69.87	30.41	86.25	106.75	63.82	66.25	117.72	89.62	285.97	42.45	68.99	86.74	246.04	145.57	76.85	109.28	216.91	90.03	55.66	63.12	97.00	140.09	77.82	140.32	151.53	308.94
22	E2_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	1.76	2.23	0.00	0.00	0.00	0.00	13.52	0.00	1.11	7.57	3.29	4.64	0.00	8.09	0.00	4.09	0.00	0.00	2.75	0.00	0.00	0.00	2.20	3.07
23	E2a_E3a	KnownJunction	0	61.64	75.33	113.99	141.49	83.26	102.36	107.05	6.77	55.61	74.34	95.54	226.95	23.44	57.32	66.97	182.68	141.99	70.51	56.65	170.36	104.61	39.91	34.92	105.99	74.90	38.41	152.67	132.55	177.65
24	I2	Intron	0	1.77	0.30	0.31	2.96	0.45	1.77	0.74	0.68	2.47	1.99	0.38	6.37	1.07	0.44	1.73	2.64	3.36	0.81	0.88	0.89	0.92	0.33	0.17	1.28	0.66	0.07	2.44	0.75	1.69
25	I2_SR1	SilentIntronRegion	0	1.77	0.30	0.31	2.97	0.45	1.77	0.74	0.68	2.48	1.99	0.38	6.38	1.07	0.44	1.74	2.64	3.36	0.81	0.88	0.89	0.92	0.33	0.17	1.29	0.66	0.07	2.44	0.75	1.69
26	E3_Aa	NovelBoundary	0	0.00	0.00	1.37	0.00	0.00	1.84	0.00	0.00	0.00	1.88	0.00	1.30	0.00	0.00	16.74	3.21	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22
27	ER3a	ExonRegion	0	92.71	91.12	156.51	383.31	118.84	134.28	119.19	39.56	69.87	123.70	107.20	255.63	49.11	74.27	135.11	252.88	136.40	91.39	134.47	234.63	120.25	50.40	46.02	136.11	117.80	35.20	159.52	65.59	148.44
28	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.52	0.00	0.00	0.00	0.00	1.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55
29	E3a_E4a	KnownJunction	0	2.42	0.00	0.00	40.33	12.38	12.70	8.24	0.00	3.11	1.68	11.83	6.02	8.79	6.49	0.00	12.16	8.80	14.64	8.09	18.44	5.21	0.00	0.00	16.21	10.72	3.86	5.07	4.09	1.95
30	E3a_E5a	KnownJunction	0	103.99	98.79	26.19	424.70	71.33	167.51	198.19	38.32	76.22	203.96	129.26	322.58	80.31	117.94	110.82	446.37	156.53	134.85	234.46	293.58	175.44	65.63	82.05	171.49	158.44	48.58	131.40	80.16	142.98
31	E3a_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	6.04	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	2.63	0.00	0.00	0.00	0.00	0.00
32	E3_Db	NovelBoundary	0	2.71	4.85	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER3b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	I3	Intron	0	1.77	1.62	0.25	1.61	0.37	2.06	1.51	0.14	4.95	2.49	2.14	3.60	0.58	0.47	3.37	3.00	3.80	1.92	1.44	1.80	2.35	0.68	0.00	2.26	1.61	0.47	0.00	1.83	1.65
35	I3_SR1	SilentIntronRegion	0	2.34	1.98	0.72	0.00	0.00	3.49	0.87	0.00	6.37	5.13	2.06	3.96	0.67	0.08	6.74	5.36	3.93	2.50	1.38	3.00	1.56	0.27	0.00	2.26	2.35	0.53	0.00	2.11	2.41
36	I3_AR1	ActiveIntronRegion	0	1.39	1.21	0.00	3.13	0.71	2.42	1.76	0.27	5.59	2.05	3.29	3.59	0.90	0.63	3.48	3.66	3.67	2.01	2.32	1.79	3.00	1.22	0.00	3.30	1.70	0.51	0.00	2.61	1.82
37	I3_SR2	SilentIntronRegion	0	2.09	2.14	0.41	0.00	0.00	0.67	1.48	0.00	3.14	1.76	0.29	3.46	0.00	0.44	1.34	0.61	4.01	1.49	0.00	1.16	1.74	0.00	0.00	0.52	1.05	0.38	0.00	0.40	0.98
38	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	9.71	0.00	5.87	0.00	0.00	3.29	1.60	0.00	7.11	0.00	0.95	0.00	0.00	1.71	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	1.59	0.00	0.00	1.32
39	ER4a	ExonRegion	0	0.28	0.04	0.00	21.94	1.75	5.66	6.07	1.22	3.36	3.69	17.43	5.88	4.64	2.84	0.00	15.05	4.16	7.94	5.23	6.68	6.24	1.19	0.00	5.25	7.72	0.84	1.05	2.10	1.48
40	E4_Da	NovelBoundary	0	4.90	3.78	3.11	9.92	0.00	9.13	0.00	0.00	3.11	3.64	6.20	5.51	0.00	3.17	27.51	18.05	4.23	0.00	16.18	9.26	3.09	0.00	2.12	10.05	3.67	0.00	2.04	2.11	3.40
41	I4	Intron	0	2.70	0.00	0.00	9.03	0.00	6.06	2.54	0.00	4.95	0.91	1.50	2.34	0.82	0.57	2.90	4.69	1.88	3.64	8.05	6.45	4.49	0.00	2.28	1.35	3.60	2.97	6.92	1.03	2.10
42	I4_AR1	ActiveIntronRegion	0	2.73	0.00	0.00	9.14	0.00	6.13	2.57	0.00	5.01	0.92	1.52	2.37	0.83	0.58	2.94	4.71	1.90	3.68	8.15	6.50	4.55	0.00	2.31	1.37	3.64	3.01	7.01	1.04	2.13
43	E5_Aa	NovelBoundary	0	0.00	0.00	2.62	19.41	0.00	5.87	18.08	1.89	8.37	12.50	11.17	4.49	1.85	4.17	8.17	37.25	5.81	9.25	0.00	4.13	3.61	2.48	0.00	16.75	5.38	2.19	8.35	3.95	6.50
44	ER5a	ExonRegion	0	107.30	96.00	92.77	243.10	58.57	122.74	143.95	91.09	83.89	144.36	105.11	316.69	65.26	82.17	142.18	292.17	143.89	87.97	135.01	207.90	104.84	66.64	62.93	164.81	152.40	53.73	165.03	112.11	237.80
45	E5_Da	KnownBoundary	0	20.41	0.00	0.00	0.00	0.00	30.12	2.46	5.08	12.73	7.27	4.46	20.75	0.00	6.23	50.43	37.79	16.77	9.25	32.37	7.11	9.83	2.48	0.00	14.24	4.96	0.00	0.00	0.00	6.37
46	E5a_E5b	KnownJunction	0	70.19	86.00	75.79	252.36	39.94	67.37	106.99	39.76	89.80	131.66	62.51	203.82	55.12	48.68	106.24	196.75	82.81	37.24	89.02	96.10	90.49	37.14	40.58	100.97	92.44	32.61	148.45	94.04	274.87
47	ER5b	ExonRegion	0	10.93	17.68	5.22	11.38	4.77	18.51	7.47	3.73	14.89	12.74	4.64	27.74	1.45	8.33	32.64	33.27	40.18	17.99	17.65	18.47	7.75	1.09	0.95	20.09	9.11	3.13	3.17	8.58	6.61
48	E5_Ab	KnownBoundary	0	13.74	14.35	1.22	0.00	5.60	11.89	2.92	4.18	12.91	3.40	1.61	21.05	0.00	7.07	26.71	24.10	25.28	0.00	24.28	14.47	15.68	1.90	0.00	5.02	21.75	0.00	0.00	0.00	8.09
49	ER5c	ExonRegion	0	55.65	91.17	52.32	125.78	46.34	54.98	82.55	56.74	116.76	84.76	50.19	172.48	34.44	48.64	135.96	144.03	76.82	47.26	92.86	118.55	61.17	43.51	37.88	102.21	83.52	37.31	96.35	67.81	143.19
50	E5_Db	KnownBoundary	0	4.95	40.82	11.78	61.69	32.42	32.27	15.28	0.00	18.70	21.09	5.95	61.72	10.48	16.13	59.40	63.72	31.85	9.25	40.46	38.79	27.72	4.47	2.51	36.19	8.37	3.99	24.20	15.46	33.81
51	ER5d	ExonRegion	0	8.92	27.23	12.59	26.30	11.75	25.94	21.33	8.19	28.84	22.78	8.61	51.42	8.48	10.15	64.75	48.88	22.37	18.94	27.58	42.38	18.04	5.40	5.21	25.11	18.31	6.73	15.47	11.12	35.47
52	IG7_SR1	SilentIntergenicRegion	0	3.01	1.51	0.78	3.35	4.57	1.93	0.94	6.03	0.00	1.35	2.23	9.84	1.55	0.48	4.73	5.80	1.60	1.80	0.12	9.03	2.00	0.00	1.82	5.05	4.05	2.21	0.86	3.05	3.18
53	IG7_AR1	ActiveIntergenicRegion	0	1.55	3.07	3.38	0.74	1.66	3.12	2.61	2.06	5.32	3.58	3.10	12.67	2.22	1.39	4.81	5.61	4.81	2.62	7.09	8.15	4.06	1.59	1.55	5.80	3.57	2.68	4.55	5.31	7.41
54	IG7_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	9.96	1.33	0.00	1.04	2.77	1.30	1.19	3.67	1.95	0.91	5.23	5.23	2.00	0.91	2.41	5.06	3.28	1.80	0.84	2.15	1.43	0.00	1.83	0.05	4.03
55	IG7_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.20	0.00	1.30	0.57	0.96	0.44	2.11	0.08	0.44	1.83	0.30	0.01	3.45	1.25	1.31	0.39	2.87	1.28	0.96	0.30	0.00	1.34	0.52	0.00	0.53	0.58	3.26
56	IG7_AR5	ActiveIntergenicRegion	0	0.00	4.64	0.00	2.00	2.57	1.37	4.33	0.00	2.11	3.79	1.89	5.94	2.44	3.09	10.39	3.22	3.97	1.01	4.88	4.35	3.00	0.00	0.00	1.28	3.58	0.41	5.14	0.82	2.65