Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PDK4	Gene	0	5.61	12.40	8.31	145.50	14.06	32.11	5.89	3.37	5.81	46.51	92.69	38.34	22.29	20.79	40.58	24.67	29.70	20.26	50.73	85.47	22.06	0.45	30.84	340.50	67.31	9.56	27.02	6.75	14.52
2	5178	Transcript	0	8.65	11.56	11.01	120.82	9.99	42.61	4.33	2.68	3.11	60.56	117.37	44.71	20.01	30.53	28.38	27.91	31.26	26.16	73.30	80.81	26.52	1.06	40.06	328.62	84.27	10.94	17.04	7.91	14.74
3	473301	Transcript	0	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.29	0.24	0.00	0.00	0.37	0.93	0.02	0.00	0.39	0.00	0.58	0.29	0.00	0.00	1.60	0.01	0.00	0.00	0.00	0.01
4	473796	Transcript	0	0.01	0.04	0.08	3.14	0.06	0.46	0.02	0.02	0.02	0.64	0.99	0.87	0.18	0.28	0.03	0.20	0.23	0.12	0.61	0.69	0.20	0.02	0.49	3.92	0.80	0.13	0.15	0.12	0.13
5	498190	Transcript	0	1.61	3.28	3.48	73.27	4.98	12.76	1.79	1.38	2.81	35.73	53.55	21.39	6.82	11.34	7.00	6.04	19.27	5.32	17.42	27.40	8.57	0.00	13.56	128.05	47.62	4.71	6.87	5.71	7.38
6	468445	Transcript	0	0.00	0.00	0.26	3.37	0.00	0.77	0.00	0.00	0.00	0.00	0.00	0.28	0.40	0.49	0.00	0.84	0.79	0.00	0.00	2.56	0.00	0.00	0.01	6.30	0.25	0.00	0.00	0.00	0.00
7	IG42	Intergenic	0	0.00	0.00	0.90	3.85	1.31	5.53	0.00	0.00	0.90	1.55	0.96	0.00	0.35	0.00	0.00	3.33	0.40	3.10	0.86	0.74	3.83	0.00	1.94	2.89	4.22	2.53	0.98	0.44	0.72
8	IG42_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.91	3.89	1.32	5.59	0.00	0.00	0.91	1.57	0.97	0.00	0.35	0.00	0.00	3.37	0.40	3.14	0.87	0.75	3.87	0.00	1.96	2.92	4.27	2.56	0.99	0.44	0.73
9	ER1a	ExonRegion	0	0.00	0.00	2.74	27.42	4.98	4.85	0.00	0.00	0.00	2.21	3.94	1.58	0.69	0.34	0.00	1.98	1.38	7.25	0.14	18.01	1.11	0.00	3.33	6.05	6.57	0.98	0.00	1.17	0.46
10	ER1b	ExonRegion	0	2.98	4.28	6.43	24.93	2.15	17.12	1.46	3.51	0.97	20.04	33.93	15.65	5.85	10.05	2.01	13.46	13.86	12.57	13.12	34.16	9.74	0.62	22.80	59.94	23.42	6.63	2.57	3.45	4.62
11	E1a_E2a	KnownJunction	0	7.90	8.82	32.21	66.86	6.93	22.79	2.40	6.92	0.00	20.65	87.31	33.95	12.04	33.32	8.37	31.29	25.08	33.52	40.46	52.84	21.14	0.00	36.05	159.41	58.57	5.84	19.43	6.87	16.80
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	1.74	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	12.76	18.28	14.77	164.90	10.17	48.13	6.73	9.21	1.61	68.27	134.33	41.16	20.90	37.66	8.68	32.01	30.36	22.76	51.38	87.59	26.11	1.29	43.07	242.53	99.55	11.11	16.65	4.83	11.80
14	E2_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	0	10.74	28.21	6.00	69.88	0.00	27.32	5.03	1.99	0.00	54.73	129.51	36.26	19.17	38.55	0.00	21.42	39.17	43.15	97.11	63.68	37.54	0.00	34.08	313.73	92.52	3.69	23.51	4.58	10.30
16	ER2b	ExonRegion	0	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.29	0.24	0.00	0.00	0.37	0.93	0.02	0.00	0.39	0.00	0.58	0.29	0.00	0.00	1.60	0.01	0.00	0.00	0.00	0.01
17	ER3a	ExonRegion	0	18.70	11.82	12.06	105.22	6.23	45.90	4.93	5.37	2.11	64.39	145.16	41.06	19.45	37.62	15.09	31.18	36.63	30.63	63.11	81.35	35.70	2.55	44.45	344.84	106.96	11.44	8.01	4.87	16.67
18	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E4a	KnownJunction	0	14.04	9.02	19.38	174.49	19.45	45.12	0.00	2.29	3.59	69.67	135.52	51.75	19.84	32.92	41.46	46.74	30.03	20.04	105.20	85.84	20.86	0.00	46.89	345.55	98.31	18.93	2.53	6.25	23.04
20	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4a	ExonRegion	0	9.34	14.67	22.16	166.89	17.42	49.93	4.52	5.03	3.36	86.18	167.90	66.54	25.18	40.42	14.74	39.67	41.63	30.96	67.57	114.19	35.07	0.78	56.89	380.76	129.02	13.92	24.27	11.89	14.55
22	E4a_E4c	KnownJunction	0	2.60	0.00	13.30	113.24	7.22	86.86	5.72	2.19	1.46	102.94	148.94	72.38	20.86	47.97	8.37	26.16	39.05	27.74	105.20	95.27	31.93	4.08	72.20	385.33	107.03	20.90	14.86	23.14	20.14
23	ER4b	ExonRegion	0	0.01	0.04	0.08	3.14	0.06	0.46	0.02	0.02	0.02	0.64	0.99	0.87	0.18	0.28	0.03	0.20	0.23	0.12	0.61	0.69	0.20	0.02	0.49	3.92	0.80	0.13	0.15	0.12	0.13
24	E4_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
25	ER4c	ExonRegion	1	4.59	24.29	15.47	160.54	8.17	52.83	2.23	3.19	3.55	95.17	167.20	64.36	25.80	36.10	13.35	37.08	43.32	28.21	42.36	116.81	21.61	1.47	80.32	398.29	134.59	24.91	41.17	14.20	18.17
26	E4_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.55	0.00	0.00	0.00	0.00	1.15	0.00	16.18	0.00	0.00	0.00	3.84	0.00	0.00	0.00	0.00	0.00	0.00
27	E4b_E5a	KnownJunction	1	3.01	25.89	24.96	108.28	18.57	46.85	0.00	6.27	2.83	72.14	177.47	62.02	25.57	38.31	16.74	46.36	53.12	18.49	32.37	129.42	15.72	4.96	71.26	383.72	131.27	17.08	36.13	16.80	24.53
28	ER5a	ExonRegion	1	6.29	14.99	17.64	161.72	31.93	48.55	2.02	8.05	8.74	96.33	186.05	69.98	21.90	43.65	15.37	39.78	58.91	17.32	64.46	131.85	40.85	1.20	55.69	426.12	157.48	12.83	37.19	24.47	20.86
29	E5_Da	NovelBoundary	0	0.00	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E5a_E6b	KnownJunction	1	7.20	9.02	13.58	279.11	26.38	49.53	2.92	3.68	11.30	128.50	187.91	84.22	25.32	47.46	48.83	23.87	85.87	32.75	48.55	119.75	37.70	0.00	42.99	518.72	181.96	17.72	15.06	29.39	30.44
31	I5_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I5_AR2	ActiveIntronRegion	0	0.00	0.00	0.22	1.90	0.00	1.26	0.00	0.00	0.00	0.27	0.16	0.24	0.00	0.54	0.00	0.00	0.32	0.26	0.85	3.97	0.00	0.00	0.00	4.16	0.19	0.00	0.24	0.43	0.53
33	I5_SR2	SilentIntronRegion	0	0.00	0.00	0.00	9.92	0.00	0.08	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.44	0.00	1.87	4.34	0.00	0.00	0.00	6.98	0.00	0.00	0.00	2.10	0.00
34	E6_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.16	1.80	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E6_Ab	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00
36	ER6a	ExonRegion	0	3.22	6.57	6.73	142.60	9.96	24.74	3.02	2.76	5.62	71.47	107.11	41.44	13.64	22.68	14.00	11.39	37.06	9.55	33.94	54.81	17.12	0.00	27.12	250.61	93.62	9.43	13.74	11.41	14.76
37	ER6b	ExonRegion	1	6.26	23.47	24.80	265.08	39.20	52.33	6.45	4.68	3.39	133.68	173.47	83.28	34.59	43.99	12.82	33.10	56.81	32.86	73.43	125.07	23.50	0.00	95.20	483.22	176.43	19.65	24.85	20.74	32.44
38	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00
39	E6a_E7a	KnownJunction	1	2.54	39.36	31.42	282.99	29.47	71.02	5.44	11.15	0.00	120.52	163.96	60.84	43.56	34.79	8.37	60.89	32.73	52.27	40.46	156.38	32.09	0.00	118.89	464.05	154.12	20.26	24.95	24.80	35.36
40	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.20	0.00	0.00	0.00	0.00	0.00
41	ER7a	ExonRegion	1	7.38	19.84	19.09	210.81	28.58	40.77	1.32	7.89	1.85	68.41	150.24	47.16	23.29	43.37	5.26	33.77	47.58	34.57	56.09	115.95	28.18	0.44	63.64	398.48	129.88	24.13	39.94	14.00	20.58
42	E7_Da	KnownBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	0.00	0.00	0.00	5.20	1.67	0.00	0.00	0.00	0.00
43	E7a_E7c	KnownJunction	0	12.50	24.04	13.93	152.28	0.00	37.02	2.92	0.00	5.85	61.24	154.76	55.81	21.14	28.76	16.74	27.92	53.35	57.02	56.42	100.15	23.02	2.48	49.74	364.34	106.84	15.88	41.70	10.33	13.77
44	ER7b	ExonRegion	0	0.00	0.00	0.23	3.94	0.00	0.77	0.56	0.00	0.00	0.00	0.00	1.34	0.00	0.00	0.00	0.70	1.48	1.08	0.90	0.00	0.02	0.00	0.00	5.50	1.62	0.00	0.00	0.00	0.00
45	E7_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.96	0.00	0.00	0.00	0.00
46	E7_Ac	KnownBoundary	0	0.00	0.00	0.00	8.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.23	3.67	0.00	0.00	0.00	0.00
47	ER7c	ExonRegion	0	0.76	1.35	0.59	9.46	0.00	1.62	0.24	0.00	0.20	3.48	8.05	4.15	1.60	1.87	0.66	1.49	4.66	2.73	4.53	5.62	1.09	0.11	2.66	26.07	9.92	1.02	1.94	0.48	0.95
48	ER7d	ExonRegion	0	7.40	10.08	14.74	181.15	9.28	17.81	3.07	1.17	3.80	47.97	83.23	47.73	25.69	23.81	18.71	23.98	52.27	29.96	71.38	90.58	11.51	2.17	36.99	268.75	72.44	13.43	24.02	8.22	20.99
49	E7_Db	KnownBoundary	0	7.31	3.88	18.99	223.46	20.04	17.53	0.00	4.48	3.08	46.42	47.99	49.04	22.26	23.40	9.97	30.22	57.40	23.12	96.66	52.18	8.46	2.48	34.72	173.58	46.18	3.99	7.60	8.18	25.02
50	ER7e	ExonRegion	1	5.59	16.13	17.90	197.11	22.87	25.49	2.63	9.96	1.06	63.64	88.03	53.26	19.76	31.54	27.07	40.30	45.96	42.38	64.53	109.15	16.25	1.07	52.96	289.59	88.88	12.19	26.28	14.30	24.71
51	E7c_E8a	KnownJunction	0	19.88	17.06	19.83	191.53	13.56	39.98	2.75	11.05	2.80	41.18	76.05	39.49	17.83	30.55	24.91	24.10	32.89	46.75	32.37	93.20	11.23	2.24	58.11	285.68	102.25	27.81	22.91	15.10	14.66
52	I7	Intron	0	0.37	0.56	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.53	0.00	0.47	1.90	2.15	0.79	0.67	0.00	0.48	0.00	0.00	0.00	3.36	0.74	0.00	0.00	0.00	0.00
53	I7_AR1	ActiveIntronRegion	0	0.38	0.56	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.47	1.92	2.17	0.80	0.68	0.00	0.48	0.00	0.00	0.00	3.39	0.75	0.00	0.00	0.00	0.00
54	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.22	0.00	0.00	0.00	0.00	0.00	2.83	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	5.14	1.86	0.00	0.00	0.00	0.00
55	ER8a	ExonRegion	0	9.34	15.07	25.71	254.08	17.57	34.37	3.62	5.23	4.68	61.80	122.16	37.94	20.76	29.99	22.26	30.35	30.54	37.85	49.98	100.42	21.88	1.38	57.74	316.97	112.35	31.78	28.87	12.11	11.93
56	E8_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.70	3.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00
57	E8a_E9a	KnownJunction	0	5.78	0.00	30.22	318.15	34.78	27.97	8.18	10.90	6.21	53.33	137.04	51.41	19.27	33.88	52.02	20.96	44.05	13.87	88.79	90.64	22.14	0.00	67.57	339.39	127.03	29.05	31.91	8.45	33.67
58	ER8b	ExonRegion	0	0.00	0.00	0.26	3.37	0.00	0.77	0.00	0.00	0.00	0.00	0.00	0.28	0.40	0.49	0.00	0.84	0.79	0.00	0.00	2.56	0.00	0.00	0.01	6.30	0.25	0.00	0.00	0.00	0.00
59	E8_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	1.87	0.00	1.09	0.00	0.00	0.95	0.00	0.00	7.77	0.00	0.00	0.00	10.65	0.00	0.00	0.00	0.00	0.00
60	I8	Intron	0	0.00	0.00	0.00	4.28	0.00	0.12	0.35	0.00	0.00	0.12	0.10	0.73	0.27	0.23	1.18	0.00	1.14	0.33	0.00	1.81	0.36	0.00	0.00	12.99	0.61	0.27	0.00	0.14	0.00
61	I8_SR1	SilentIntronRegion	0	0.00	0.00	0.00	4.48	0.00	0.12	0.36	0.00	0.00	0.13	0.11	0.76	0.29	0.24	1.00	0.00	1.15	0.34	0.00	1.83	0.35	0.00	0.00	13.03	0.64	0.28	0.00	0.10	0.00
62	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	18.98	0.00	1.96	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	13.70	1.74	0.00	0.00	0.00	1.42
63	I8_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.30	0.00	0.00	5.38	0.00	1.12	0.00	0.00	1.35	0.80	0.00	0.00	13.17	0.00	0.00	0.00	1.04	0.00
64	ER9a	ExonRegion	0	7.97	16.52	11.24	214.66	22.66	45.29	9.52	4.61	9.16	63.36	133.48	54.68	32.36	28.72	45.67	34.66	43.69	26.63	72.66	125.68	35.27	0.52	39.95	509.03	96.02	12.96	39.12	10.20	22.19
65	E9_Da	KnownBoundary	0	8.55	23.17	4.19	229.28	6.34	37.33	2.23	0.00	3.99	49.53	112.49	34.04	22.74	18.10	97.07	17.82	45.40	28.90	97.11	93.45	24.67	0.00	21.67	573.87	64.78	8.45	58.20	2.25	21.85
66	ER9b	ExonRegion	0	5.15	17.24	1.43	188.56	14.59	38.26	10.10	1.93	11.24	43.81	90.63	43.37	34.88	15.90	118.98	28.21	30.91	23.38	74.74	107.35	23.41	0.00	22.59	524.04	49.49	6.74	46.12	3.46	18.00