Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	KCTD7	Gene	0	59.18	51.76	40.97	46.37	54.79	53.15	14.28	18.19	34.81	51.38	28.54	66.83	26.05	55.81	49.24	82.97	132.64	57.27	50.42	109.63	36.19	18.96	53.12	63.71	100.61	59.39	63.77	137.84	35.64
2	275532	Transcript	0	47.66	39.64	32.76	37.96	43.82	44.69	11.72	13.60	24.71	41.16	22.39	49.71	19.23	41.85	35.62	72.03	103.29	44.90	39.84	83.65	29.54	12.83	40.59	48.08	77.04	47.03	50.87	101.29	27.27
3	443322	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	449064	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	IG5_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	2.15	1.43	0.00	0.00	0.00	0.00
6	IG5_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	1.38	1.43	0.00	0.00	0.00	0.00
7	IG5_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.20	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00
8	IG5_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	10.24	0.00	3.47	5.80	9.57	2.38	2.53	0.00	0.00	2.45	0.00	3.06	2.70	3.01	0.00	40.25	10.41	10.05	2.59	9.10	3.69	1.34	8.58	0.00	1.16	7.98	0.00	7.89	2.09
10	E1_Ab	KnownBoundary	0	12.50	0.00	5.31	0.00	13.12	6.83	2.80	0.00	0.00	7.39	0.00	5.75	1.62	3.37	0.00	23.41	29.85	9.25	0.00	3.89	5.21	0.00	12.07	0.00	0.00	4.25	0.00	6.07	1.52
11	E1_Ac	KnownBoundary	0	3.01	0.00	0.00	0.00	6.34	0.00	0.00	0.00	0.00	3.87	0.00	4.70	1.27	3.04	0.00	7.27	7.83	0.00	0.00	8.27	0.00	0.00	4.48	0.00	1.44	0.00	0.00	10.78	0.00
12	ER1b	ExonRegion	1	10.86	0.00	4.94	0.00	10.96	3.12	2.02	0.61	0.00	6.45	0.00	5.36	2.17	4.05	0.00	20.25	18.23	4.37	0.00	10.31	3.04	0.48	13.14	0.00	0.95	3.25	0.00	13.58	0.36
13	ER1c	ExonRegion	0	17.53	2.54	5.03	13.54	13.87	7.24	3.11	4.67	1.51	10.24	1.46	24.95	4.78	18.42	4.19	38.79	41.64	22.29	6.46	33.23	6.91	8.36	19.45	6.84	11.59	17.92	4.87	64.37	8.85
14	E1a_E2a	KnownJunction	0	36.51	3.68	14.00	9.49	0.00	14.35	22.54	4.48	5.45	15.58	4.52	24.34	1.31	32.08	8.77	78.95	75.59	23.12	8.09	47.14	7.10	2.43	39.40	26.50	13.11	9.57	17.34	25.84	5.94
15	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	Ix_AR2	ActiveIntronRegion	0	3.27	0.47	1.35	2.04	1.43	2.73	0.00	0.79	2.92	1.88	0.00	1.79	0.00	0.94	2.95	4.00	4.36	0.28	1.91	0.81	1.45	1.32	0.78	0.63	1.53	1.05	1.07	4.32	0.84
17	Ix_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.56	0.07	0.00	0.32	0.23	0.68	0.57	2.92	0.69	5.34	0.85	0.00	0.00	0.76	0.00	0.09	4.57	4.56	0.00	0.00	2.11	0.49
18	E2_Aa	NovelBoundary	0	3.01	4.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	1.76	2.19	5.98	0.00
19	ER2a	ExonRegion	0	62.50	13.18	24.91	25.25	30.80	25.04	11.43	15.23	6.73	31.84	14.04	62.66	17.26	58.82	17.00	86.37	104.82	58.45	27.74	101.53	25.38	34.89	58.06	28.28	57.96	49.02	19.41	158.04	20.20
20	E2_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	2.20	0.00
21	E2a_E3a	KnownJunction	0	79.28	21.91	31.34	0.00	80.32	23.56	18.48	19.86	10.69	41.54	10.60	75.75	21.18	71.12	36.87	119.49	121.42	50.86	40.46	144.64	29.28	54.79	45.06	33.08	66.83	72.61	19.08	188.49	5.58
22	Ix_AR1	ActiveIntronRegion	0	0.83	0.00	0.65	0.00	1.89	0.53	0.00	0.00	0.00	1.12	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	2.20	0.00	0.70	1.66	0.55	0.00	2.83	1.89	0.00
23	ER3a	ExonRegion	0	62.64	17.45	46.94	42.08	45.25	29.52	11.62	15.96	11.28	34.06	18.04	51.82	20.64	49.84	21.53	88.43	120.11	60.36	29.78	95.99	25.00	28.68	63.63	32.20	61.29	45.31	23.23	108.12	16.95
24	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	3.61	0.39	0.00	0.86	0.59	0.66	0.00	0.44	0.67	0.52	0.00	1.41	0.00	0.87	1.22	2.01	0.54	0.46	1.54	1.66	1.03	0.22	0.87	0.78	1.55	1.32	0.00	3.33	0.00
26	Ix_AR1	ActiveIntronRegion	0	3.79	0.55	0.00	1.22	0.00	0.52	0.00	0.63	0.95	0.49	0.00	1.53	0.00	0.89	0.15	2.17	0.76	0.00	1.63	2.34	0.73	0.00	0.93	0.73	1.92	1.75	0.00	3.47	0.00
27	Ix_AR2	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	2.41	0.00	0.00	0.00	0.00	0.00	2.47	0.00	1.81	11.20	2.53	0.00	1.71	0.00	0.00	1.43	0.00	3.62	2.15	0.54	1.57	0.00	2.24	0.00
28	Ix_SR1	SilentIntronRegion	0	3.41	0.00	0.00	0.00	2.26	0.94	0.00	0.00	0.00	0.67	0.00	1.05	0.00	0.78	3.36	1.59	0.00	1.66	1.48	0.00	1.88	0.84	0.51	0.84	0.66	0.20	0.00	3.20	0.00
29	ER4a	ExonRegion	0	57.87	15.54	64.34	25.89	26.25	37.62	13.95	18.36	8.52	34.87	13.93	71.12	29.91	56.03	25.35	81.26	169.03	59.38	25.69	100.69	19.83	21.90	50.31	32.50	64.28	63.91	37.47	153.16	21.62
30	E4_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER4b	ExonRegion	0	99.83	39.67	67.12	54.88	44.00	57.96	18.94	30.41	19.19	59.25	28.73	93.42	24.65	101.97	52.13	116.45	207.73	101.07	33.85	156.82	40.03	32.81	76.59	48.38	107.27	97.38	40.67	213.28	30.31
32	E4_Db	KnownBoundary	0	62.05	30.44	69.76	39.69	36.99	25.21	13.16	38.57	23.69	33.23	25.91	80.96	16.94	70.10	60.59	59.59	123.71	84.64	48.33	105.52	41.80	24.36	61.61	50.42	85.70	68.88	50.59	95.66	17.86
33	E4b_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER4c	ExonRegion	0	83.32	54.91	60.70	64.18	60.86	82.22	18.69	24.01	21.22	70.95	36.08	81.77	23.51	76.13	43.43	98.36	183.49	76.75	61.65	139.13	49.07	20.02	63.33	66.20	119.31	78.68	75.53	168.26	38.09
35	E4_Ab	KnownBoundary	0	45.89	48.09	28.55	44.00	68.68	53.45	15.68	4.88	17.21	51.09	30.15	64.37	27.67	45.33	60.99	95.85	110.12	50.86	32.37	108.34	49.14	4.96	45.95	72.80	70.62	34.63	44.78	111.39	17.40
36	ER4d	ExonRegion	0	41.94	58.69	29.85	47.13	68.14	49.44	8.68	10.77	20.16	50.09	23.75	63.54	21.46	54.94	36.94	76.90	110.28	52.01	73.10	109.91	33.64	10.35	44.15	59.02	90.16	41.29	43.75	116.41	36.77
37	E4_Dc	KnownBoundary	0	34.51	61.37	29.03	30.20	87.10	44.43	16.82	4.13	15.74	58.04	35.21	69.97	31.94	54.55	26.51	98.38	118.74	50.86	64.74	151.67	34.78	21.59	48.66	76.44	99.15	37.89	57.25	100.38	32.22
38	ER4e	ExonRegion	0	49.44	64.03	34.09	43.91	61.04	49.48	13.93	16.78	52.91	50.06	31.10	64.29	31.48	46.42	63.44	77.48	115.95	47.89	55.30	102.73	35.86	17.14	49.87	78.05	110.67	54.43	77.07	127.71	41.62