Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC005682.2	Gene	0	21.76	8.55	21.09	23.36	2.09	15.68	52.09	15.26	25.04	24.78	10.79	16.46	7.85	5.08	7.07	5.92	10.51	13.01	13.24	9.12	11.34	5.21	7.86	5.35	2.74	2.43	12.72	3.77	4.36
2	432668	Transcript	0	18.17	8.93	5.16	14.48	0.86	13.26	11.03	4.53	17.58	13.17	5.59	6.64	5.15	3.77	8.51	6.78	7.76	15.28	7.57	5.96	8.45	2.11	1.27	3.77	1.48	0.62	6.70	3.20	1.93
3	415611	Transcript	0	5.91	2.84	16.04	9.57	0.95	7.30	44.37	6.11	10.55	18.00	5.50	9.52	3.22	2.50	3.43	3.54	5.49	4.31	5.15	6.18	4.68	2.16	6.11	2.15	1.19	1.14	10.79	1.27	2.87
4	422542	Transcript	0	4.66	1.96	10.28	8.74	1.28	6.04	34.02	3.36	14.93	10.51	5.08	8.72	3.10	1.12	3.44	4.85	2.86	8.95	8.34	6.70	3.60	2.03	4.53	2.43	1.00	3.24	6.93	1.28	2.89
5	IG40_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	1.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.15	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.00	0.00	0.00
6	IG40_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	3.25	0.20	0.00	0.00	0.00	1.87	0.00	0.00	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
7	IG40_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.46	2.89	0.82	0.00	0.00	0.00	6.13	0.00	0.00	0.00	0.21	0.00	0.00	0.00	0.00	0.00	0.00	0.64	0.00	1.30	1.30
8	IG40_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
9	IG40_AR3	ActiveIntergenicRegion	0	34.28	2.92	12.39	4.22	2.72	9.19	15.03	10.01	6.14	12.62	4.47	7.05	4.15	3.89	4.14	2.75	10.94	13.31	5.09	3.17	7.47	1.74	2.97	1.05	0.64	0.59	4.20	4.20	1.10
10	IG40_SR6	SilentIntergenicRegion	0	52.32	9.81	24.09	9.29	1.36	19.88	17.71	8.09	18.78	28.90	10.12	14.05	5.60	7.95	4.97	6.51	19.31	19.65	10.49	7.00	18.10	3.07	2.43	3.42	1.87	2.60	6.61	8.03	2.60
11	IG40_AR4	ActiveIntergenicRegion	0	1.98	0.00	0.00	0.00	0.00	1.27	0.00	1.74	0.00	0.00	5.58	1.15	1.23	0.86	8.71	0.00	0.00	7.28	6.03	0.00	2.67	0.00	3.42	0.00	0.00	0.00	0.00	1.54	0.00
12	ER1a	ExonRegion	0	27.98	13.46	7.96	13.35	0.62	23.98	16.45	3.72	17.54	17.90	8.63	9.29	5.15	4.86	4.01	2.88	10.27	13.77	10.92	3.35	11.63	1.47	2.54	5.17	2.62	1.22	13.40	5.26	1.31
13	E1_Ab	KnownBoundary	0	33.50	30.83	2.89	20.28	0.00	16.61	21.23	13.04	31.91	32.32	15.31	11.36	3.22	6.51	0.00	3.06	13.60	18.49	16.18	4.13	9.39	6.32	5.02	5.14	3.11	3.73	7.45	8.63	3.50
14	ER1b	ExonRegion	1	103.81	38.95	25.81	62.68	6.40	46.74	74.29	129.93	67.73	35.27	27.03	29.86	23.94	12.83	14.40	5.06	13.02	51.46	43.32	24.49	30.97	28.84	13.17	9.83	7.76	12.35	26.16	19.33	5.75
15	E1_Da	NovelBoundary	0	28.08	18.32	1.17	27.82	0.00	29.24	22.14	12.44	30.30	19.49	5.31	4.82	3.18	3.32	22.52	0.00	8.58	13.87	7.87	0.00	23.71	0.00	0.00	5.68	0.00	2.19	8.50	8.54	3.60
16	E1a_E2a	KnownJunction	0	551.63	54.29	266.79	337.56	20.93	154.47	418.98	740.37	546.90	84.72	57.20	128.19	128.11	63.04	52.22	30.83	95.33	116.10	96.88	95.85	140.67	101.22	59.44	40.50	27.35	44.46	42.49	37.38	76.43
17	E1a_E3a	NovelJunction	0	0.00	0.00	3.04	0.00	0.00	1.80	0.00	0.00	1.55	2.04	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.63
18	ER1c	ExonRegion	0	273.68	48.69	95.54	212.07	14.94	77.67	218.35	269.92	156.89	58.99	41.06	64.41	57.25	34.63	33.60	12.74	29.66	105.85	101.02	60.53	71.37	62.71	31.84	28.04	16.74	25.37	29.63	25.73	23.97
19	I1	Intron	0	0.00	2.11	0.00	0.00	0.00	1.25	0.00	0.00	0.00	7.89	0.00	0.00	0.00	0.83	0.00	1.63	0.00	3.51	2.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I1_SR1	SilentIntronRegion	0	0.00	2.19	0.00	0.00	0.00	1.30	0.00	0.00	0.00	8.10	0.00	0.00	0.00	0.86	0.00	1.69	0.00	3.64	3.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	I1	Intron	0	6.34	4.59	1.24	3.97	1.80	6.35	4.84	0.34	16.14	10.40	0.88	5.23	1.43	1.83	4.59	2.16	5.79	5.75	11.22	1.53	8.70	1.00	1.00	1.59	0.00	0.00	0.68	1.51	1.73
22	I1_SR1	SilentIntronRegion	0	6.38	4.63	1.24	4.00	1.82	6.40	4.88	0.34	16.26	10.48	0.89	5.27	1.44	1.85	4.62	2.18	5.83	5.80	11.28	1.54	8.76	1.01	1.01	1.60	0.00	0.00	0.68	1.52	1.74
23	E2_Aa	NovelBoundary	0	10.74	18.42	1.47	27.18	0.00	15.96	2.92	0.00	17.45	10.95	0.00	4.10	1.18	3.01	0.00	3.44	3.04	14.64	8.09	3.89	8.82	0.00	5.02	0.00	0.00	0.00	0.00	0.00	0.00
24	ER2a	ExonRegion	0	144.98	25.68	101.93	133.95	10.19	39.18	148.16	124.73	112.94	33.04	21.42	48.21	44.37	28.43	17.18	19.90	29.21	24.69	26.02	35.90	44.19	31.38	22.27	20.88	9.75	11.64	17.23	10.00	21.20
25	E2_Da	KnownBoundary	0	11.27	4.85	4.91	47.67	6.48	5.37	13.90	6.42	41.66	5.83	2.91	10.90	10.13	7.29	7.57	29.22	15.58	13.87	8.09	6.78	10.79	2.19	0.00	4.90	3.49	0.00	0.00	1.84	5.45
26	E2a_E3a	KnownJunction	0	2.42	0.00	9.07	0.00	0.00	3.61	29.92	1.99	1.64	6.07	0.00	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.00	3.56	0.00	0.00	2.51	0.00	0.00	0.00	8.75	0.00	1.68
27	E2a_E4a	KnownJunction	0	0.00	0.00	1.54	0.00	0.00	1.61	5.44	0.00	1.55	3.60	0.00	5.54	0.00	0.00	0.00	6.58	0.00	4.62	0.00	3.89	0.00	0.00	2.07	0.00	0.00	5.11	2.53	0.00	0.00
28	ER2b	ExonRegion	0	8.36	4.40	2.36	15.62	1.10	2.54	5.60	5.34	17.61	8.44	2.54	3.98	5.15	2.68	13.00	10.68	5.25	16.79	4.22	8.57	5.27	2.75	0.00	2.37	0.34	0.03	0.00	1.13	2.55
29	E2_Db	NovelBoundary	0	74.68	15.51	6.88	0.00	7.07	16.08	13.85	78.13	263.14	3.20	0.00	20.84	34.71	28.29	0.00	0.00	33.20	9.25	8.09	33.25	12.71	8.31	0.00	0.00	0.00	0.00	0.00	1.71	9.31
30	I2	Intron	0	35.41	32.48	24.02	91.41	12.28	38.03	85.79	32.73	104.40	29.04	8.76	29.45	27.99	11.53	51.23	16.06	21.98	57.43	36.72	55.16	24.85	2.27	5.52	8.50	2.82	2.26	5.26	7.03	5.28
31	I2_SR1	SilentIntronRegion	0	35.40	32.48	24.02	91.41	12.28	38.03	85.78	32.72	104.40	29.04	8.76	29.45	27.99	11.53	51.23	16.06	21.98	57.43	36.72	55.15	24.83	2.27	5.52	8.50	2.82	2.26	5.26	7.03	5.28
32	E3_Aa	NovelBoundary	0	2.36	0.00	3.79	0.00	0.00	7.14	7.72	2.54	9.20	17.98	4.05	8.43	0.00	4.10	0.00	0.00	6.80	0.00	8.09	0.00	16.45	0.00	0.00	2.87	3.86	0.00	0.00	0.00	1.29
33	ER3a	ExonRegion	0	9.40	5.68	23.01	19.14	1.90	10.99	58.82	10.22	19.46	29.92	10.99	19.03	6.45	4.17	6.85	7.08	10.99	8.63	10.31	8.80	9.36	4.31	9.70	4.31	2.38	2.27	12.83	2.54	4.05
34	E3_Da	NovelBoundary	0	11.62	4.85	22.02	10.78	0.00	1.65	58.07	2.04	10.72	44.62	7.78	22.56	4.59	1.13	0.00	7.11	9.75	0.00	0.00	2.98	13.56	0.00	2.07	5.56	3.30	1.85	14.01	0.00	1.35
35	I3	Intron	0	4.48	5.09	6.75	17.08	4.75	9.29	41.65	4.39	22.36	23.94	10.18	14.87	3.75	1.61	2.41	6.18	8.35	5.96	7.92	6.02	15.53	1.31	5.54	3.87	1.88	0.92	19.06	1.36	2.47
36	I3_SR1	SilentIntronRegion	1	9.19	7.04	8.00	18.53	4.18	10.35	53.58	5.29	21.27	28.00	12.03	18.05	3.44	2.29	3.53	6.21	10.17	8.75	10.56	7.84	17.86	2.83	7.60	1.44	3.14	1.38	19.33	1.99	1.37
37	I3_AR1	ActiveIntronRegion	1	2.56	6.14	6.02	25.09	6.08	13.86	46.94	4.34	29.36	31.55	12.34	19.97	5.41	1.93	3.39	7.33	10.31	5.40	7.90	8.37	21.11	1.32	4.35	6.70	2.10	1.07	17.89	1.34	3.18
38	I3_SR2	SilentIntronRegion	0	2.78	2.59	6.54	8.23	3.91	4.07	27.59	3.76	16.48	13.53	6.71	7.52	2.39	0.78	0.60	5.06	5.08	4.42	5.97	2.35	8.39	0.15	5.15	2.99	0.70	0.42	20.08	0.90	2.62
39	E4_Aa	NovelBoundary	0	0.00	0.00	7.67	52.20	0.00	3.38	50.46	10.80	37.09	20.57	13.03	8.49	0.00	0.93	0.00	10.71	6.39	0.00	0.00	4.13	5.62	0.00	6.45	2.93	1.59	2.19	0.00	2.20	0.00
40	ER4a	ExonRegion	0	9.33	3.92	19.01	17.47	2.55	10.48	62.61	6.71	28.31	17.42	10.15	11.90	6.19	2.24	6.88	3.13	5.71	13.27	16.68	9.51	7.20	4.06	6.99	4.87	1.99	1.37	11.33	2.55	5.78
41	IG41	Intergenic	0	4.00	2.53	5.58	4.96	0.59	4.05	22.37	3.10	10.83	11.90	5.58	7.14	2.82	1.05	2.87	2.06	4.13	3.06	5.57	2.24	5.53	0.81	3.05	2.59	0.56	0.95	5.78	0.74	1.37
42	IG41_SR1	SilentIntergenicRegion	0	4.56	0.00	2.75	18.40	4.18	7.49	49.55	0.00	20.98	15.32	0.50	2.99	2.26	0.35	2.35	0.00	0.81	3.70	2.92	8.61	8.10	2.91	7.76	3.12	0.46	0.00	3.01	0.00	3.29
43	IG41_AR1	ActiveIntergenicRegion	0	18.12	9.29	24.63	20.07	1.10	14.33	105.56	13.13	35.06	41.75	23.44	26.22	9.02	3.75	9.25	6.36	11.25	13.00	24.46	8.83	19.82	3.02	13.83	8.85	1.48	1.91	25.85	2.47	5.37
44	IG41_SR2	SilentIntergenicRegion	0	0.41	0.89	0.84	0.83	0.38	1.37	0.70	0.64	4.48	4.27	1.19	2.42	1.27	0.38	1.27	1.02	2.41	0.53	0.86	0.42	1.86	0.21	0.21	0.99	0.33	0.72	0.77	0.31	0.31