Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C7orf30	Gene	0	73.72	37.40	23.54	62.66	54.26	41.83	86.01	74.44	47.26	43.04	42.73	79.43	64.61	26.93	98.40	64.08	32.28	29.14	65.79	50.52	52.42	52.28	48.30	38.95	53.76	40.69	39.73	45.11	42.93
2	479974	Transcript	0	0.01	0.01	0.00	0.00	0.01	0.00	0.00	0.02	0.00	0.00	0.02	0.43	0.01	0.00	0.00	0.02	0.01	0.00	0.02	0.00	0.00	0.01	0.01	0.00	0.01	0.01	0.00	0.01	0.09
3	466681	Transcript	0	4.90	2.13	2.70	12.78	14.35	2.99	3.60	4.55	4.45	3.24	3.28	5.73	4.64	2.37	6.06	6.71	2.30	2.65	5.00	4.71	3.16	3.68	4.06	2.63	2.17	2.90	5.17	4.43	4.41
4	287543	Transcript	0	6.12	4.89	2.03	2.68	0.00	5.13	0.20	0.22	5.92	7.15	1.16	0.03	1.96	6.92	5.33	18.39	4.50	7.46	22.30	0.00	5.50	1.71	0.04	7.92	4.78	1.19	0.13	1.27	0.07
5	481564	Transcript	0	9.22	2.51	1.18	4.11	1.40	10.14	1.70	1.58	7.69	10.97	4.78	7.16	0.37	7.18	3.96	6.64	11.15	9.25	12.92	2.38	5.45	0.26	0.52	3.47	2.79	3.05	0.00	3.34	3.45
6	476623	Transcript	0	12.60	9.98	3.29	11.22	6.32	11.86	10.27	5.38	13.37	14.21	7.41	12.01	8.33	15.16	30.36	36.13	22.78	15.84	18.10	6.92	14.90	7.12	3.62	18.79	11.29	6.85	5.47	8.68	7.13
7	IG50_AR1	ActiveIntergenicRegion	0	3.57	29.72	0.00	3.27	0.00	9.40	0.94	0.25	1.82	3.80	2.27	1.73	0.00	2.35	9.49	4.24	0.00	3.69	14.48	3.48	2.77	10.94	2.51	2.70	0.46	1.08	1.81	0.00	0.60
8	IG50_SR1	SilentIntergenicRegion	0	4.08	20.57	0.00	0.52	0.00	11.55	2.54	3.86	0.91	2.78	4.45	2.39	0.00	3.48	4.27	4.46	0.00	5.20	10.34	8.03	1.73	18.63	4.69	1.08	2.31	1.12	2.14	0.00	0.13
9	ER1a	ExonRegion	0	0.03	0.02	0.00	0.00	0.02	0.00	0.00	0.03	0.01	0.00	0.03	0.87	0.01	0.00	0.00	0.04	0.01	0.01	0.04	0.01	0.00	0.01	0.02	0.00	0.02	0.02	0.00	0.02	0.18
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	6.57	0.84	2.83	16.45	24.30	1.73	3.10	4.77	1.25	2.43	1.21	4.30	3.35	0.64	5.08	5.35	1.04	2.90	3.07	2.67	0.96	3.97	5.70	0.89	1.87	3.09	1.74	3.38	4.40
12	E2_Ab	KnownBoundary	0	0.00	0.00	2.62	20.92	7.37	1.69	0.00	10.15	2.86	1.88	1.61	1.51	0.00	0.00	0.00	7.65	0.00	0.00	0.00	0.00	0.00	4.72	2.27	0.00	0.00	2.19	0.00	0.00	1.55
13	E2_Ac	KnownBoundary	0	101.99	11.92	34.41	231.44	364.30	18.11	47.26	25.18	6.33	41.06	10.69	51.54	43.31	5.34	82.32	41.62	11.75	32.62	0.00	37.21	16.04	43.80	64.81	7.78	23.11	46.00	27.13	50.19	58.47
14	ER2b	ExonRegion	0	96.46	16.42	54.98	347.35	403.51	24.74	78.61	43.27	8.99	41.87	17.85	90.29	51.96	9.07	106.41	63.27	18.03	62.77	22.63	50.59	23.54	57.69	92.22	17.21	27.16	50.29	29.30	61.94	80.53
15	ER2c	ExonRegion	0	230.89	51.71	85.55	283.06	199.00	87.81	419.73	217.78	80.33	113.27	61.28	212.00	197.73	47.74	315.98	261.87	83.75	120.27	111.11	125.88	109.38	176.05	209.14	54.68	105.27	187.17	52.01	162.10	156.60
16	E2_Da	NovelBoundary	0	10.97	0.00	2.64	0.00	0.00	0.00	2.23	0.00	0.00	1.72	0.00	4.70	0.00	0.00	0.00	7.50	4.93	0.00	0.00	0.00	3.77	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	0	475.78	171.80	116.83	216.12	88.28	246.28	545.09	527.67	203.64	261.88	204.17	540.26	421.14	134.36	569.85	318.08	207.74	125.60	226.59	229.66	244.07	360.01	342.78	183.69	244.09	438.93	153.27	399.76	377.87
18	E2a_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	4.46	0.00	9.37	0.00	0.00	4.62	24.28	0.00	0.00	0.00	0.00	2.99	0.00	2.10	0.00	1.93	5.28
19	E2a_E5a	NovelJunction	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I2	Intron	0	2.89	2.09	1.09	2.51	0.00	1.51	0.50	0.37	0.56	3.03	0.77	2.16	0.49	1.60	1.97	4.55	3.43	2.04	4.47	3.03	1.92	0.63	0.72	1.18	2.36	1.26	0.73	0.81	0.40
21	I2_SR1	SilentIntronRegion	0	2.90	2.10	1.09	2.52	0.00	1.52	0.51	0.37	0.56	3.04	0.78	2.16	0.49	1.61	1.98	4.57	3.44	2.04	4.49	3.04	1.93	0.63	0.73	1.19	2.37	1.26	0.73	0.82	0.40
22	E3_Aa	NovelBoundary	0	0.00	0.00	1.12	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	4.34	0.00	0.00	0.00	3.21	7.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.54	4.18	3.33
23	ER3a	ExonRegion	0	492.85	229.03	158.69	192.68	254.17	195.91	402.99	514.15	224.10	240.35	252.88	562.08	409.46	158.74	528.54	312.90	190.36	130.14	389.75	250.67	206.13	336.73	326.16	235.33	345.98	250.42	276.05	306.26	277.75
24	E3_Da	KnownBoundary	0	477.96	297.06	346.09	384.15	346.18	203.00	460.46	518.66	296.58	303.03	362.06	495.89	469.10	183.55	699.61	336.90	181.47	162.46	509.83	301.44	223.21	266.18	343.37	248.65	342.63	187.11	280.94	264.42	222.48
25	ER3b	ExonRegion	0	780.39	297.73	292.62	702.41	748.95	422.29	679.42	837.95	385.66	397.02	401.62	617.27	543.81	224.39	738.92	424.13	243.97	217.16	552.30	443.81	569.31	529.15	352.20	366.46	591.21	350.73	267.74	314.83	333.71
26	E3_Db	KnownBoundary	0	6.02	0.00	2.57	0.00	0.00	14.81	0.00	0.00	1.77	5.71	0.00	7.47	0.00	2.86	0.00	16.45	8.73	13.87	8.09	0.00	3.97	2.48	0.00	4.85	1.63	6.57	0.00	1.75	0.00
27	E3b_E4b	KnownJunction	0	738.44	309.76	89.07	605.23	772.23	484.54	622.50	656.26	420.61	357.27	359.62	637.88	564.63	226.48	754.62	439.41	257.62	196.88	638.63	374.88	498.89	505.81	297.02	502.87	627.53	408.24	247.44	341.93	356.48
28	E3b_E5a	NovelJunction	0	6.02	0.00	0.00	0.00	0.00	0.00	0.00	4.98	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00
29	ER3c	ExonRegion	0	9.22	2.51	1.18	4.11	1.40	10.14	1.70	1.58	7.69	10.97	4.78	7.16	0.37	7.18	3.96	6.64	11.15	9.25	12.92	2.38	5.45	0.26	0.52	3.47	2.79	3.05	0.00	3.34	3.45
30	E3_Dc	NovelBoundary	0	2.42	0.00	2.32	0.00	0.00	7.75	2.29	0.00	5.06	0.00	0.00	1.14	0.00	5.74	0.00	3.82	4.55	4.62	8.09	8.27	0.00	0.00	0.00	4.67	0.00	0.00	0.00	1.93	1.29
31	I3	Intron	0	7.12	5.99	1.99	3.56	2.67	7.64	2.60	1.46	5.23	7.88	3.13	4.83	0.67	7.90	13.18	16.58	11.04	8.57	13.31	5.18	7.57	1.07	0.72	5.12	3.62	4.05	3.54	3.07	3.22
32	I3_SR1	SilentIntronRegion	0	4.43	7.04	1.20	3.42	1.17	6.34	2.08	1.90	3.66	7.47	2.08	2.16	0.10	5.80	8.72	10.17	7.36	8.23	12.20	4.58	6.01	0.57	0.29	1.37	3.30	2.38	3.35	2.20	2.13
33	I3_AR1	ActiveIntronRegion	0	11.64	4.27	3.32	3.80	5.18	9.83	3.47	0.73	7.87	8.61	4.89	9.31	1.63	11.44	20.69	27.35	17.21	9.19	15.23	6.21	10.20	1.91	1.44	11.40	4.17	6.87	3.88	4.53	5.05
34	E4_Aa	NovelBoundary	0	35.33	4.85	1.47	9.92	6.63	13.89	13.39	2.49	22.05	10.99	10.09	15.45	4.33	21.56	51.23	45.44	39.12	13.87	32.37	11.08	15.76	4.23	8.62	18.54	8.26	22.79	0.00	6.25	9.18
35	ER4a	ExonRegion	0	12.60	9.98	3.29	11.22	6.32	11.86	10.27	5.38	13.37	14.21	7.41	12.01	8.33	15.16	30.36	36.13	22.78	15.84	18.10	6.92	14.90	7.12	3.62	18.79	11.29	6.85	5.47	8.68	7.13
36	E4_Ab	KnownBoundary	0	5.37	0.00	6.38	0.00	0.00	4.76	13.27	2.34	16.66	10.83	6.11	9.97	5.32	9.99	36.87	28.61	24.76	23.12	48.55	3.06	18.57	2.48	2.51	21.00	7.16	6.52	4.27	12.85	7.20
37	ER4b	ExonRegion	0	490.30	336.44	59.64	271.38	237.45	289.61	496.42	506.39	333.85	288.22	305.01	655.67	487.96	222.24	662.67	436.66	243.88	182.32	524.49	345.96	326.98	315.10	291.09	334.70	407.38	207.22	248.00	273.08	275.53
38	E4_Da	KnownBoundary	0	11.68	11.15	3.09	9.27	0.00	10.09	2.23	0.00	10.78	12.82	1.36	1.14	6.50	14.69	19.13	41.39	13.26	23.89	32.37	0.00	16.61	2.09	0.00	14.00	12.54	2.19	1.94	2.07	0.00
39	E4a_E5a	KnownJunction	0	352.91	390.23	95.40	40.12	45.69	228.79	586.85	445.85	454.96	269.27	315.84	576.44	452.22	176.79	748.05	359.70	213.55	120.85	574.34	278.03	313.98	262.34	254.28	224.43	241.56	209.21	150.83	187.86	272.92
40	ER4c	ExonRegion	0	6.12	4.89	2.03	2.68	0.00	5.13	0.20	0.22	5.92	7.15	1.16	0.03	1.96	6.92	5.33	18.39	4.50	7.46	22.30	0.00	5.50	1.71	0.04	7.92	4.78	1.19	0.13	1.27	0.07
41	E4_Db	NovelBoundary	0	15.45	14.45	5.56	0.00	6.04	18.72	8.18	0.00	17.21	6.07	2.94	7.56	7.64	10.79	26.11	27.08	12.94	23.12	8.09	10.83	12.51	7.88	4.83	14.83	10.84	2.19	8.75	14.51	3.90
42	I4	Intron	0	9.89	8.97	1.16	8.74	3.40	7.06	1.93	1.76	7.61	7.16	2.07	6.17	1.80	8.90	10.26	21.46	10.52	11.35	11.12	4.18	7.32	1.10	1.57	12.17	7.71	1.64	4.94	5.39	2.15
43	I4_AR1	ActiveIntronRegion	0	9.92	9.00	1.17	8.77	3.41	7.08	1.94	1.77	7.64	7.19	2.07	6.19	1.81	8.93	10.29	21.53	10.55	11.38	11.16	4.20	7.35	1.10	1.58	12.21	7.74	1.65	4.96	5.41	2.16
44	E5_Aa	NovelBoundary	0	10.85	4.85	5.73	30.63	0.00	7.71	2.75	2.24	18.24	14.98	6.30	11.14	9.33	20.89	26.31	66.71	30.18	28.51	16.18	3.06	15.60	0.00	6.45	15.13	8.79	1.89	0.00	12.13	3.43
45	ER5a	ExonRegion	0	251.71	207.59	69.05	165.50	136.40	202.30	316.02	245.65	262.33	184.80	229.20	320.24	253.21	114.59	474.12	220.30	132.07	106.86	338.47	242.62	272.45	187.66	176.57	182.19	240.10	125.36	229.91	173.15	154.64
46	E5_Da	KnownBoundary	0	30.55	22.40	13.73	36.67	60.72	22.71	28.72	35.98	17.14	19.85	10.19	35.12	35.41	19.48	42.46	37.41	19.22	13.87	40.46	53.59	26.87	14.78	10.93	20.52	12.54	6.44	41.05	43.31	19.18
47	ER5b	ExonRegion	0	3.22	3.41	2.57	9.11	4.41	4.25	4.11	4.32	7.64	4.04	5.35	7.16	5.94	4.11	7.04	8.08	3.56	2.39	6.93	6.76	5.36	3.39	2.42	4.37	2.48	2.72	8.60	5.49	4.42