Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PTP4A1	Gene	0	106.66	301.99	124.85	276.68	237.46	462.29	258.41	127.54	204.74	164.02	243.76	365.43	153.97	126.09	137.19	159.52	166.92	191.12	382.74	222.60	535.76	119.02	210.09	220.47	183.28	135.44	363.03	73.32	160.61
2	470661	Transcript	0	0.11	0.00	0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.00	0.30	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.02	0.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	370651	Transcript	0	230.45	355.60	335.11	491.48	359.39	464.24	404.02	384.36	214.58	258.59	362.72	557.44	223.32	211.12	148.04	193.65	291.27	309.20	398.18	304.83	582.54	290.45	432.13	296.54	377.95	308.00	471.19	158.28	227.35
4	370650	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	473334	Transcript	0	2.03	3.05	2.87	0.00	4.01	2.05	2.06	0.12	0.23	1.13	0.08	1.72	0.09	0.99	0.37	1.97	0.69	2.50	0.43	0.75	1.17	0.49	2.94	1.30	2.29	1.39	0.00	1.14	0.77
6	370644	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.43	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.01	0.00	0.00	0.00	0.00	0.07	0.06	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I2_AR3	ActiveIntronRegion	0	0.42	1.90	0.33	0.00	0.48	2.98	0.00	0.00	0.88	0.57	0.00	0.24	0.00	0.71	0.00	2.44	1.47	1.14	0.31	0.54	0.70	0.00	0.18	0.42	0.70	0.62	0.72	0.32	1.97
12	I2_AR4	ActiveIntronRegion	0	0.00	0.61	0.02	0.00	0.00	2.27	0.00	0.00	0.21	0.82	0.22	0.00	0.00	1.11	0.00	1.84	1.00	0.36	0.00	1.04	2.16	0.00	0.00	0.68	1.28	0.95	1.28	0.00	0.88
13	I2_SR5	SilentIntronRegion	0	0.65	0.00	0.24	0.00	0.00	1.94	0.00	0.00	0.26	1.76	0.00	0.19	0.00	0.14	0.00	2.30	0.56	0.98	0.00	0.00	2.18	0.00	1.38	1.09	0.50	0.67	0.65	0.00	0.31
14	I2_AR5	ActiveIntronRegion	0	0.75	3.79	5.76	2.77	0.17	8.36	0.85	0.97	3.19	2.18	1.34	2.73	0.57	1.75	1.45	4.48	1.73	3.50	1.12	0.39	4.86	1.27	2.86	2.95	4.37	4.97	3.73	0.40	4.54
15	E3_Aa	NovelBoundary	0	0.00	0.00	8.84	0.00	7.37	1.65	2.92	0.00	1.55	0.00	0.00	0.00	0.00	1.04	9.37	0.00	0.00	4.62	0.00	3.14	3.53	4.08	1.87	0.00	1.78	4.38	2.63	2.29	6.80
16	ER3a	ExonRegion	0	22.38	15.58	50.97	86.86	66.52	44.24	45.94	22.12	6.59	18.95	13.90	23.98	11.30	6.36	11.61	44.57	19.08	46.66	29.20	13.44	47.12	20.09	64.41	4.75	9.29	35.80	8.64	12.44	11.49
17	E3_Ab	KnownBoundary	0	57.57	21.04	115.26	193.69	161.96	137.78	165.75	49.37	27.92	79.49	48.02	79.09	37.35	19.01	45.25	149.40	67.89	120.98	97.11	33.99	167.34	65.54	128.10	20.10	39.32	154.45	41.55	43.04	39.09
18	ER3b	ExonRegion	0	77.78	55.73	121.83	170.25	150.32	197.68	126.55	104.92	33.65	75.85	64.61	165.97	79.99	51.68	38.19	129.00	99.37	120.41	88.48	91.13	201.51	110.35	180.10	34.94	67.97	166.61	84.18	64.60	107.04
19	E3_Da	NovelBoundary	0	3.01	0.00	4.51	0.00	0.00	7.37	2.12	0.00	0.00	0.00	3.23	0.00	0.00	1.13	0.00	10.79	0.00	9.25	8.09	0.00	1.60	0.00	4.68	0.00	1.48	8.41	0.00	0.00	0.00
20	E3a_E5a	KnownJunction	0	212.47	187.60	53.37	423.62	268.81	391.69	214.33	286.90	80.27	154.79	231.60	241.08	121.42	136.53	53.82	143.97	103.97	201.51	291.33	223.04	358.11	281.74	237.33	115.86	172.83	185.43	293.76	70.18	133.01
21	E4_Aa	NovelBoundary	0	0.00	0.00	3.94	0.00	0.00	7.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00
22	ER4a	ExonRegion	0	1.69	1.35	2.99	0.00	2.57	2.15	1.21	0.25	0.46	0.63	0.16	0.58	0.18	0.81	0.74	3.94	0.07	5.01	0.87	1.50	2.34	0.98	1.69	0.33	1.44	2.77	0.00	0.39	1.55
23	E4_Da	NovelBoundary	0	2.95	0.00	3.91	0.00	0.00	3.91	0.00	0.00	1.19	0.00	1.52	1.54	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E4a_E5a	KnownJunction	0	2.36	4.75	2.74	0.00	5.45	1.96	2.92	0.00	0.00	1.64	0.00	2.86	0.00	1.17	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	4.19	2.27	3.14	0.00	0.00	1.89	0.00
25	I4	Intron	0	2.83	1.98	0.69	0.67	0.91	4.41	0.38	0.14	0.78	0.59	1.13	2.30	0.06	0.96	0.58	1.99	1.67	4.36	3.21	0.46	2.87	0.24	0.13	0.84	1.38	0.97	0.51	0.18	0.54
26	I4_SR1	SilentIntronRegion	0	4.39	2.77	1.26	1.54	1.32	6.31	0.49	0.40	0.24	0.62	0.87	2.02	0.00	1.02	0.30	1.47	1.77	5.59	2.16	1.04	2.68	0.49	0.29	0.87	1.82	1.66	0.20	0.18	0.67
27	I4_AR1	ActiveIntronRegion	0	1.67	0.68	0.23	0.00	2.00	3.30	1.51	0.00	0.61	1.77	1.47	2.18	0.00	0.68	0.00	2.13	1.42	3.51	3.67	0.00	3.77	0.00	0.25	0.50	1.62	1.34	0.75	0.22	0.41
28	I4_SR2	SilentIntronRegion	0	3.64	3.65	0.00	0.00	0.00	2.32	0.00	0.00	0.99	0.00	1.14	4.63	0.00	0.77	0.00	0.76	0.98	2.66	2.42	0.00	5.61	0.00	0.00	0.70	1.52	0.81	0.81	0.00	0.00
29	I4_AR2	ActiveIntronRegion	0	2.63	1.75	0.44	0.00	1.05	4.35	0.00	0.00	1.51	0.05	1.71	3.00	0.00	1.01	0.99	2.69	1.90	4.59	4.16	0.00	4.35	0.00	0.00	1.12	1.68	0.00	1.58	0.18	0.14
30	I4_SR3	SilentIntronRegion	0	1.60	1.57	0.48	0.45	0.00	3.08	0.00	0.00	1.05	0.42	0.95	1.95	0.20	1.02	1.03	2.31	1.64	3.47	3.82	0.34	1.46	0.22	0.00	0.83	0.59	0.59	0.11	0.20	0.75
31	E5_Aa	NovelBoundary	0	5.19	0.00	1.30	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	3.82	0.92	0.00	0.00	4.13	0.00	1.85	0.00	3.05	1.40	0.00	0.00	0.00	0.00
32	ER5a	ExonRegion	0	233.17	212.16	176.34	278.43	217.46	543.07	345.04	370.55	105.44	222.66	304.08	408.72	179.50	215.12	90.45	240.07	190.99	275.79	292.12	350.45	566.93	319.00	423.77	169.71	265.68	304.60	276.69	126.63	207.83
33	E5_Da	KnownBoundary	0	287.20	284.74	393.11	417.58	399.82	477.64	288.31	358.71	140.78	190.86	319.98	495.14	162.25	249.13	57.01	204.79	166.86	289.61	356.07	416.72	474.31	324.86	273.58	241.83	282.55	166.03	359.96	131.47	181.51
34	ER5b	ExonRegion	0	296.36	463.91	462.78	490.77	418.58	786.89	476.91	364.45	208.54	326.46	493.78	592.07	258.21	314.37	144.93	296.32	277.12	415.05	592.14	499.52	825.27	358.43	530.59	288.96	403.21	271.65	574.46	167.67	300.26
35	E5_Db	KnownBoundary	0	292.33	525.28	193.34	577.62	471.74	980.10	546.29	248.48	225.53	437.64	461.23	603.96	276.47	300.62	179.79	342.41	331.38	584.10	760.69	550.03	1080.89	271.43	566.67	313.13	407.11	244.27	809.32	182.11	315.68
36	ER5c	ExonRegion	0	278.39	675.17	227.25	580.46	367.63	1171.16	570.37	245.13	304.46	401.11	574.71	756.25	315.50	298.49	200.64	357.97	360.31	524.69	873.34	600.59	1239.01	259.94	546.71	354.81	443.33	236.77	675.67	138.90	347.99
37	E5_Ab	KnownBoundary	0	271.16	730.81	486.61	1191.91	518.31	1378.82	643.90	205.33	375.11	512.74	589.45	945.07	366.24	305.30	260.31	515.53	475.55	750.80	929.96	538.37	1280.16	231.66	729.68	432.29	386.58	319.07	754.46	260.60	464.90
38	ER5d	ExonRegion	0	263.48	686.33	546.90	832.95	588.30	1007.12	576.72	249.19	328.57	403.55	608.64	927.35	372.57	331.45	200.61	345.29	464.87	524.49	837.80	552.69	1101.50	273.88	634.42	401.44	474.08	337.20	867.50	220.96	405.88
39	E5_Dc	NovelBoundary	0	5.25	0.00	0.00	0.00	0.00	9.32	2.86	0.00	1.55	1.52	2.40	2.92	0.00	1.04	0.00	7.19	2.84	9.63	24.28	0.00	3.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52
40	E5c_E6a	KnownJunction	0	206.10	533.91	252.49	704.02	496.05	714.71	461.21	146.06	262.90	266.80	448.93	752.25	233.96	284.07	200.32	209.30	329.78	341.50	704.04	476.26	993.65	202.69	426.50	388.50	441.55	233.11	587.18	170.20	240.37
41	I5	Intron	0	2.23	7.71	0.75	0.65	0.00	6.76	1.27	0.33	2.30	0.72	2.09	2.81	0.06	1.81	2.62	3.25	3.10	8.52	10.53	2.22	7.27	0.24	0.00	1.46	2.06	0.64	0.08	0.81	0.21
42	I5_AR1	ActiveIntronRegion	0	2.88	8.45	1.05	0.64	0.00	8.73	0.90	0.66	3.21	1.16	2.02	2.87	0.12	1.74	2.89	3.55	4.14	8.45	12.86	3.07	8.54	0.48	0.00	2.89	2.43	0.98	0.16	1.31	0.24
43	I5_AR2	ActiveIntronRegion	0	1.91	7.65	0.56	0.80	0.00	4.31	1.95	0.00	1.47	0.32	2.42	3.17	0.00	2.22	2.86	3.32	2.41	8.96	9.55	1.67	6.71	0.00	0.00	0.00	1.20	0.35	0.00	0.36	0.22
44	E6_Aa	NovelBoundary	0	5.72	3.49	0.00	0.00	0.00	1.96	5.84	2.09	0.00	0.00	0.00	3.43	0.00	4.19	0.00	2.83	2.21	13.87	24.28	0.00	1.80	0.00	0.00	2.75	3.41	0.00	0.00	0.00	0.00
45	ER6a	ExonRegion	0	272.01	555.18	317.04	655.07	420.59	729.67	493.86	353.23	264.29	342.61	528.01	876.82	288.00	325.50	229.20	274.38	379.44	426.25	698.44	465.21	990.37	324.43	504.43	386.05	530.08	333.86	618.07	173.94	265.14
46	E6_Da	NovelBoundary	0	0.00	0.00	0.00	10.57	0.00	1.65	2.63	2.24	3.01	0.00	0.00	0.00	0.00	1.02	0.00	3.82	2.52	0.00	0.00	0.00	10.11	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00
47	E6a_E7a	KnownJunction	0	261.90	573.85	499.59	836.24	423.55	628.96	579.24	409.18	282.26	373.01	547.28	865.44	310.00	338.00	249.35	324.43	439.63	498.82	712.14	462.70	848.21	362.34	574.40	403.63	561.31	456.31	613.62	233.24	379.49
48	I6	Intron	0	3.57	6.12	0.93	4.97	1.35	8.38	2.79	1.02	3.02	2.80	1.15	3.41	0.00	1.13	0.64	4.72	3.31	9.88	8.85	3.22	13.64	0.00	0.50	2.98	0.59	0.65	0.51	1.13	0.00
49	I6_AR1	ActiveIntronRegion	0	3.59	6.16	0.93	4.99	1.36	8.43	2.81	1.03	3.04	2.82	1.16	3.43	0.00	1.13	0.64	4.74	3.33	9.93	8.90	3.24	13.71	0.00	0.50	3.00	0.60	0.66	0.51	1.14	0.00
50	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	8.48	2.40	2.44	0.00	0.00	7.59	1.42	0.00	3.12	0.00	5.74	4.91	13.87	24.28	0.00	9.39	0.00	0.00	5.68	0.00	7.64	0.00	2.29	0.00
51	ER7a	ExonRegion	0	354.39	564.98	542.50	675.00	476.29	767.13	601.39	518.38	280.40	347.23	638.24	927.43	323.98	363.46	183.58	305.95	410.35	430.65	590.60	465.65	970.20	451.36	654.11	407.42	602.97	467.06	745.20	251.05	334.65
52	E7_Da	NovelBoundary	0	0.00	7.85	2.42	0.00	0.00	4.91	0.00	0.00	0.00	0.00	4.46	0.00	0.00	3.52	0.00	9.41	3.47	0.00	8.09	4.13	8.18	2.14	0.00	8.55	1.48	1.80	5.96	0.00	0.00
53	E7a_E8a	KnownJunction	0	360.22	544.57	584.60	512.05	456.11	621.82	561.33	654.62	267.62	378.32	453.77	909.32	313.09	306.60	217.06	226.44	462.05	424.46	525.56	529.61	881.35	450.93	616.75	363.32	537.36	481.24	669.03	250.63	325.84
54	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	I7	Intron	0	0.55	2.23	0.43	5.48	0.00	7.37	1.03	0.94	0.00	0.74	2.73	0.79	0.00	1.16	1.18	4.43	0.38	3.93	1.63	5.42	4.36	0.00	0.00	1.65	0.00	2.00	0.93	0.42	0.51
56	I7_AR1	ActiveIntronRegion	0	0.55	2.26	0.43	5.54	0.00	7.44	1.04	0.94	0.00	0.74	2.76	0.79	0.00	1.17	1.16	4.47	0.38	3.97	1.65	5.48	4.40	0.00	0.00	1.66	0.00	2.02	0.94	0.42	0.52
57	E8_Aa	NovelBoundary	0	4.78	24.24	0.00	0.00	0.00	5.14	0.00	2.54	0.00	0.00	1.17	0.00	0.00	3.10	0.00	0.00	1.40	9.76	8.09	2.98	1.60	0.00	0.00	8.85	0.00	0.00	0.00	4.04	0.00
58	ER8a	ExonRegion	0	356.13	569.65	513.97	745.89	565.90	725.17	606.26	544.32	305.45	424.16	630.38	872.23	345.64	330.98	241.65	283.91	454.03	481.86	654.19	439.81	899.40	448.33	680.15	444.80	627.57	480.04	772.93	241.42	367.88
59	E8_Da	NovelBoundary	0	0.00	0.00	4.43	0.00	0.00	5.87	2.92	0.00	0.00	1.60	0.00	3.49	0.00	3.37	0.00	0.00	1.31	23.12	8.09	0.00	5.58	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
60	E8a_E9a	KnownJunction	0	380.16	528.09	476.30	1012.24	597.15	804.53	743.45	640.69	373.20	397.86	617.63	798.51	373.79	358.98	214.27	351.21	447.62	542.75	654.82	490.57	930.84	488.80	731.11	494.55	635.75	468.58	755.50	248.07	354.17
61	I8	Intron	0	4.38	5.60	0.54	5.42	2.63	7.10	2.17	0.40	1.69	1.40	2.18	4.04	0.56	1.89	0.59	4.54	2.89	9.60	8.59	3.47	7.06	0.19	0.77	3.24	2.15	0.68	3.74	1.75	0.65
62	I8_AR1	ActiveIntronRegion	0	3.83	4.53	0.00	7.65	3.77	10.19	3.57	0.00	1.67	0.55	1.01	4.69	0.53	1.75	0.00	7.52	3.02	9.68	11.25	8.47	6.92	0.00	1.23	4.89	1.41	0.52	2.58	1.01	0.00
63	I8_SR1	SilentIntronRegion	0	6.33	12.09	0.00	11.30	0.00	10.06	3.30	0.00	1.23	1.44	3.57	4.50	1.30	3.38	0.00	11.16	5.05	16.87	9.46	6.77	4.54	0.00	0.49	3.32	1.43	1.57	4.83	0.74	0.00
64	I8_AR2	ActiveIntronRegion	0	4.48	5.56	0.68	4.82	2.65	6.57	1.91	0.50	1.76	1.58	2.36	4.01	0.54	1.88	0.74	3.75	2.82	9.42	8.31	2.50	7.42	0.24	0.73	3.03	2.38	0.67	3.98	1.99	0.82
65	E9_Aa	NovelBoundary	0	2.36	11.83	3.64	0.00	0.00	8.44	0.00	2.19	4.54	1.48	0.00	4.55	0.00	0.00	0.00	0.00	1.17	9.25	8.09	7.36	6.26	0.00	0.00	2.51	8.37	0.00	0.00	3.59	0.00
66	ER9a	ExonRegion	0	349.04	510.22	551.14	842.75	525.60	823.43	694.72	519.75	291.83	387.19	589.98	852.13	366.65	332.39	225.16	327.00	426.01	442.50	604.77	522.64	994.17	440.19	685.42	438.80	579.88	452.98	697.08	240.58	344.88
67	E9_Da	KnownBoundary	0	349.37	458.19	655.86	786.84	810.10	782.70	612.20	352.59	427.04	416.59	555.53	860.20	370.80	317.81	245.16	280.14	479.81	433.07	679.54	568.97	971.63	342.85	635.81	436.89	502.62	388.20	707.79	184.31	376.19
68	ER9b	ExonRegion	0	101.19	420.98	89.08	322.76	306.36	652.35	335.47	98.06	308.86	192.23	289.46	431.22	191.02	134.04	213.31	202.22	194.49	226.83	555.37	281.54	759.98	99.51	200.29	276.99	182.39	119.39	500.42	67.51	194.84
69	E9_Db	KnownBoundary	0	27.96	110.14	23.02	190.02	134.70	266.35	91.31	25.73	94.52	71.18	108.63	213.19	43.72	42.25	104.84	99.68	65.23	65.88	274.69	150.18	369.86	9.38	73.97	149.00	51.45	24.03	144.72	16.53	62.40
70	ER9c	ExonRegion	0	33.34	120.10	49.72	100.37	111.28	125.44	63.11	60.04	120.03	73.67	97.94	183.17	72.78	52.66	55.63	62.12	73.56	50.26	127.14	50.73	153.98	44.13	68.21	175.28	79.77	74.34	149.84	38.83	77.38