Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PCYOX1L	Gene	0	56.64	48.20	94.22	54.89	25.31	57.46	18.23	70.96	63.83	40.01	39.56	88.95	31.99	53.39	113.53	82.77	97.28	58.82	97.00	31.91	70.57	49.63	70.82	65.36	99.61	58.77	55.43	74.78	92.50
2	274569	Transcript	0	55.70	20.34	84.14	46.54	17.86	38.87	14.01	64.19	37.65	26.50	24.57	83.99	21.36	45.41	64.46	61.43	85.61	52.05	60.66	26.61	43.84	42.69	69.16	38.00	77.89	54.17	26.41	65.26	70.21
3	IG26_AR1	ActiveIntergenicRegion	0	2.88	0.00	0.25	0.00	0.00	1.22	1.20	0.55	0.58	0.86	0.71	0.00	0.39	1.30	9.74	2.47	2.28	0.57	2.37	0.70	0.00	0.00	0.00	0.32	1.06	1.40	0.27	3.22	0.80
4	ER1a	ExonRegion	0	7.05	4.63	13.35	25.75	3.51	7.07	2.67	6.46	2.07	9.77	2.18	8.17	4.19	4.98	13.57	18.16	11.31	5.73	8.03	1.70	6.99	12.95	23.77	1.55	4.62	11.85	3.46	7.67	11.88
5	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	11.21	0.00	0.00	1.80	8.75	6.62	3.08	1.48	1.39	6.51	0.00	1.17	0.00	0.00	4.37	4.62	0.00	0.00	3.73	0.00	6.70	0.00	0.00	0.00	2.19	0.00	0.00
7	I1	Intron	0	17.80	5.63	12.07	6.66	2.85	10.58	3.47	10.16	4.52	7.09	3.85	10.29	0.28	9.53	9.31	20.26	26.45	16.62	17.12	3.50	5.94	2.10	2.59	3.08	12.36	5.17	0.87	8.61	3.57
8	I1_SR1	SilentIntronRegion	0	18.52	5.78	12.67	6.84	3.02	10.99	3.62	10.43	4.72	7.38	4.04	10.71	0.29	9.87	9.54	20.40	27.69	17.20	17.48	3.64	6.12	2.13	2.64	3.20	12.71	5.38	0.93	8.97	3.77
9	I1_AR2	ActiveIntronRegion	0	6.21	3.73	1.94	4.15	0.00	3.98	1.15	6.40	1.30	2.51	0.69	3.57	0.00	4.46	5.86	21.17	6.00	7.82	12.96	1.15	3.31	2.09	2.10	1.25	7.46	1.82	0.00	2.83	0.00
10	E2_Aa	NovelBoundary	0	10.68	0.00	24.77	42.92	0.00	12.05	7.78	7.37	9.81	5.59	0.00	16.48	0.00	14.89	16.54	23.49	31.27	27.87	0.00	6.95	0.00	1.80	6.40	5.32	11.97	6.31	2.09	7.37	7.49
11	ER2a	ExonRegion	0	32.41	6.00	26.20	10.03	7.75	20.53	5.60	26.78	14.59	13.75	12.00	33.00	7.56	24.28	32.49	43.54	38.83	28.36	25.34	12.14	16.77	27.28	37.64	18.00	34.43	27.10	8.54	30.64	31.55
12	E2_Da	NovelBoundary	0	16.46	0.00	8.72	18.98	0.00	5.60	5.32	11.50	8.25	5.63	0.00	8.46	0.00	6.18	8.37	24.86	22.58	23.12	0.00	0.00	2.05	2.43	2.02	5.26	5.00	8.67	0.00	0.00	4.13
13	E2a_E3a	KnownJunction	0	38.93	3.49	44.00	10.14	13.26	34.76	5.84	44.39	21.47	9.63	4.62	35.12	5.76	24.00	25.11	35.11	37.48	18.49	16.18	22.41	23.91	34.96	55.01	18.90	41.79	22.83	24.50	44.71	58.60
14	I2	Intron	0	8.81	1.80	4.53	3.35	0.00	6.68	1.32	3.96	3.87	2.30	1.56	5.75	0.12	4.90	10.73	15.67	14.92	7.83	3.58	2.62	2.40	0.51	1.18	3.21	7.61	2.50	0.34	6.85	1.63
15	I2_SR1	SilentIntronRegion	0	5.94	1.75	1.85	0.00	0.00	4.56	2.23	4.08	3.10	0.00	0.66	2.39	0.00	2.26	3.04	9.24	5.79	2.14	1.77	0.00	0.79	0.00	0.00	2.38	3.96	3.48	0.00	2.71	1.49
16	I2_SR2	SilentIntronRegion	0	9.26	1.98	5.43	4.09	0.00	7.23	1.24	4.02	4.27	2.55	1.88	7.04	0.16	5.68	13.14	18.34	18.21	8.60	4.11	3.44	2.83	0.50	1.56	3.56	8.74	2.51	0.37	7.97	1.61
17	I2_AR2	ActiveIntronRegion	0	11.30	0.00	1.33	3.56	0.00	6.02	0.00	3.13	1.58	5.31	0.29	0.03	0.00	3.04	3.33	2.60	1.52	13.65	2.32	0.00	1.70	1.80	0.00	1.63	4.44	0.00	0.94	4.93	2.25
18	E3_Aa	NovelBoundary	0	16.34	4.36	6.08	0.00	0.00	1.96	0.00	9.11	8.44	1.72	6.42	4.97	0.00	3.23	16.94	27.62	21.54	13.74	0.00	7.44	1.85	0.00	0.00	10.65	10.46	6.18	0.00	16.44	3.30
19	ER3a	ExonRegion	0	68.25	8.58	81.33	31.76	13.32	34.56	9.74	69.34	35.78	25.40	22.63	81.27	18.65	47.25	52.26	75.84	75.28	58.33	61.01	29.91	40.86	52.27	63.94	35.73	68.58	58.37	19.34	48.74	53.52
20	E3_Da	NovelBoundary	0	29.43	8.92	4.61	0.00	0.00	3.76	0.00	2.09	5.69	2.04	3.23	6.30	0.00	4.28	8.37	11.02	19.65	4.62	24.28	0.00	1.89	0.00	0.00	0.00	12.69	2.19	0.00	6.56	1.82
21	E3a_E4a	KnownJunction	1	83.41	13.19	65.95	59.53	19.01	62.42	10.36	96.00	45.25	28.52	28.25	109.64	25.63	42.34	18.14	73.52	79.19	43.02	72.83	22.49	48.45	53.09	96.38	41.99	97.63	49.61	18.49	86.72	92.77
22	I3	Intron	0	14.30	4.58	5.91	3.36	2.11	6.99	1.09	4.65	4.67	2.66	2.28	9.98	0.37	8.25	14.68	15.91	20.73	8.70	20.51	2.60	3.86	0.98	1.63	3.49	10.62	4.99	2.25	8.35	4.63
23	I3_AR1	ActiveIntronRegion	0	23.25	0.87	6.56	3.87	3.95	5.80	1.07	4.45	4.92	2.48	1.88	6.41	0.90	6.05	11.20	17.96	20.60	7.65	12.07	4.45	2.26	0.49	1.18	3.71	12.04	3.48	0.49	9.56	2.37
24	I3_SR1	SilentIntronRegion	0	11.60	0.82	2.03	0.00	0.00	5.31	0.05	2.58	3.20	1.55	3.27	5.98	0.36	2.63	5.74	9.49	11.54	4.95	11.26	6.08	2.30	2.30	1.83	0.83	7.72	3.83	0.00	3.57	0.99
25	I3_AR2	ActiveIntronRegion	0	13.06	5.71	6.32	3.60	2.12	7.76	1.27	4.81	4.92	2.83	2.43	11.31	0.31	9.11	16.10	16.85	22.09	9.05	22.62	1.87	4.04	0.87	1.51	3.60	10.43	5.35	2.92	8.43	5.42
26	I3_SR2	SilentIntronRegion	0	12.84	2.57	3.30	2.52	0.00	2.02	0.00	5.14	2.60	2.07	0.41	5.67	0.00	8.13	13.71	6.63	13.61	10.41	22.42	4.36	6.66	2.11	3.99	4.18	12.85	5.15	0.00	9.35	3.50
27	E4_Aa	NovelBoundary	0	42.29	4.65	8.50	0.00	0.00	3.38	4.81	2.39	11.94	3.87	4.56	5.18	1.62	10.59	15.55	7.50	23.21	9.25	40.24	0.00	11.31	0.00	2.51	5.32	9.93	4.03	0.00	12.67	17.37
28	ER4a	ExonRegion	0	86.83	28.82	108.95	55.95	16.31	44.90	16.07	102.46	47.25	33.06	36.38	118.09	30.75	65.99	80.52	81.82	118.79	79.35	94.44	37.19	58.41	68.33	97.89	49.30	110.17	68.68	33.68	78.40	83.39
29	E4_Da	NovelBoundary	0	13.09	0.00	6.55	0.00	0.00	5.45	0.00	4.93	3.38	0.00	0.00	2.86	0.00	4.32	16.74	14.46	7.63	0.00	16.18	3.89	11.39	4.91	0.00	2.57	4.81	0.00	0.00	0.00	5.68
30	E4a_E5a	KnownJunction	0	57.98	14.25	159.60	81.32	13.56	41.28	12.70	85.60	32.46	43.78	17.18	129.18	29.55	71.70	112.22	88.13	133.93	74.75	32.37	40.03	57.16	50.27	107.51	54.13	134.80	73.34	40.75	94.67	96.60
31	I4	Intron	0	7.65	3.39	3.66	0.58	0.40	5.24	3.27	2.09	2.28	2.46	2.61	4.95	0.21	5.72	7.53	11.99	11.01	4.14	9.58	0.67	4.97	0.58	0.59	1.92	4.06	3.19	1.19	4.63	3.79
32	I4_SR1	SilentIntronRegion	0	7.82	3.48	3.73	0.56	0.41	5.36	3.35	2.14	2.32	2.52	2.67	5.07	0.21	5.81	7.72	12.24	11.26	4.21	9.77	0.69	5.09	0.60	0.59	1.97	4.16	3.26	1.22	4.68	3.89
33	E5_Aa	NovelBoundary	0	8.55	3.88	6.60	0.00	0.00	3.91	0.00	0.00	3.01	0.00	1.61	6.84	0.00	5.16	44.05	14.84	11.39	0.00	8.09	0.00	7.30	0.00	0.00	5.80	5.34	3.39	0.00	3.95	3.17
34	I4_AR1	ActiveIntronRegion	0	1.19	0.00	1.12	2.44	0.00	0.76	0.00	0.00	0.87	0.00	0.00	0.00	0.43	3.43	0.00	2.53	1.00	1.82	3.52	0.00	0.00	0.00	0.40	0.00	0.00	0.00	0.00	3.26	0.00
35	ER5a	ExonRegion	0	96.15	46.64	152.20	78.73	29.82	64.34	23.87	115.44	65.08	40.74	50.32	161.56	38.18	77.00	130.09	93.98	151.91	93.76	93.47	45.63	64.45	71.13	110.36	62.02	124.22	97.35	46.94	115.84	115.66
36	E5_Da	NovelBoundary	0	5.25	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	2.37	15.55	5.81	4.16	4.62	0.00	0.00	0.00	2.24	0.00	11.54	0.00	8.75	0.00	0.00	1.68
37	E5a_E6a	KnownJunction	0	86.18	34.22	158.58	95.55	48.49	46.12	36.67	78.68	66.87	37.19	47.80	147.56	36.21	82.64	103.25	72.60	183.77	104.54	145.66	45.90	73.64	48.23	88.70	54.19	124.87	124.49	19.63	125.67	118.06
38	I5	Intron	0	4.33	0.00	1.04	0.00	0.00	2.14	0.31	1.72	0.52	0.90	0.00	0.96	0.00	1.69	6.86	2.59	2.79	1.20	2.48	1.29	0.67	0.56	0.56	2.34	1.33	1.22	0.00	1.27	0.21
39	I5_SR1	SilentIntronRegion	0	4.36	0.00	1.05	0.00	0.00	2.15	0.32	1.73	0.53	0.90	0.00	0.96	0.00	1.70	6.91	2.61	2.80	1.21	2.50	1.29	0.67	0.56	0.57	2.36	1.34	1.23	0.00	1.28	0.21
40	E6_Aa	NovelBoundary	0	6.02	4.07	3.09	0.00	0.00	9.21	0.00	2.54	0.00	8.99	0.00	1.54	0.00	4.25	16.94	3.52	3.62	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00
41	ER6a	ExonRegion	0	55.47	63.96	104.16	63.24	31.40	69.80	21.82	74.36	80.21	48.23	47.46	93.76	38.45	58.20	141.43	93.09	106.85	61.62	117.95	35.33	87.91	51.06	72.90	82.17	115.69	62.23	73.01	84.82	110.29
42	IG27_AR2	ActiveIntergenicRegion	0	4.98	1.98	4.73	1.26	0.00	2.78	1.57	5.14	4.64	1.01	0.63	2.71	1.00	1.86	10.67	6.57	9.10	4.11	8.38	1.46	2.94	1.43	3.21	3.46	5.43	6.02	2.37	5.32	3.82
43	IG27_SR3	SilentIntergenicRegion	0	14.83	4.92	7.07	2.51	0.00	5.29	3.93	16.97	10.24	1.77	0.00	7.76	2.43	2.67	30.24	9.33	20.08	10.47	32.51	2.47	9.22	2.82	3.08	4.01	12.19	15.51	3.93	20.22	8.79
44	IG27_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.58	0.00	0.00	0.29	0.00	0.60	0.39	0.00	0.00	1.47	0.00	0.71	0.00	0.00	0.86	0.48	0.68	0.00	1.10	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00
45	IG27_SR4	SilentIntergenicRegion	0	3.04	0.00	1.42	1.44	0.00	0.81	0.93	4.96	1.32	0.37	0.06	2.07	0.17	1.00	9.11	2.96	3.62	2.87	6.55	2.53	2.33	0.00	1.11	0.91	2.63	2.83	1.61	4.26	0.72
46	IG27_AR4	ActiveIntergenicRegion	0	7.49	1.62	3.98	2.20	0.00	3.30	0.58	12.96	3.03	0.00	1.35	7.74	0.00	0.29	19.49	10.71	8.49	3.51	15.81	2.54	7.31	1.26	2.80	2.59	4.68	6.59	6.62	7.66	3.13