Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SMAD5	Gene	0	50.88	85.18	30.18	195.42	105.41	81.65	58.08	33.35	38.32	91.79	60.44	46.64	28.73	80.61	145.18	62.52	80.99	84.17	195.46	99.15	116.60	37.01	134.09	89.56	39.96	37.56	96.71	68.85	52.31
2	398807	Transcript	1	8.79	0.00	18.64	106.98	65.43	6.83	9.78	1.89	0.00	18.53	12.27	10.45	12.10	30.24	8.37	20.58	24.02	18.49	8.09	31.34	4.09	10.31	56.93	3.05	5.42	12.96	11.08	35.32	18.85
3	231589	Transcript	0	52.16	56.94	39.27	199.88	66.42	60.49	51.07	33.14	17.60	52.94	48.79	32.16	29.44	69.54	42.94	42.18	50.75	25.47	15.09	59.02	88.91	29.44	147.67	29.40	31.45	35.10	105.62	80.96	39.82
4	405587	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	419332	Transcript	0	9.49	5.16	3.85	17.76	11.39	6.68	2.59	5.00	0.48	8.25	5.78	2.47	1.86	10.50	3.20	6.15	5.72	7.41	8.41	10.44	11.21	6.95	22.73	3.07	2.86	3.82	4.71	5.59	5.94
6	ER1a	ExonRegion	1	28.60	18.86	41.71	218.62	94.95	29.98	19.06	24.82	1.52	48.38	29.44	19.81	17.10	35.44	24.14	56.53	40.70	75.52	55.95	29.25	43.57	27.43	127.14	9.31	17.26	31.62	31.17	60.23	28.51
7	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.90	0.00	0.00	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	27.07	14.54	54.04	177.08	59.98	32.57	26.09	23.94	0.00	25.33	14.87	30.15	18.02	39.95	19.33	39.17	58.10	65.50	24.28	42.59	29.32	6.71	100.37	8.79	3.45	20.94	2.53	29.43	31.53
9	E1a_E3b	KnownJunction	1	8.79	0.00	18.64	106.98	65.43	6.83	9.78	1.89	0.00	18.53	12.27	10.45	12.10	30.24	8.37	20.58	24.02	18.49	8.09	31.34	4.09	10.31	56.93	3.05	5.42	12.96	11.08	35.32	18.85
10	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	34.01	22.99	20.02	99.74	28.89	19.06	12.42	15.32	0.30	20.14	21.20	16.26	8.54	32.21	5.97	16.50	25.19	30.86	27.82	20.80	22.92	25.91	43.40	9.95	4.48	10.25	15.26	16.32	15.16
13	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3b	KnownJunction	0	52.50	42.08	3.46	20.49	20.04	29.24	5.15	29.56	2.50	21.65	12.37	6.99	2.67	26.59	7.37	14.31	15.62	41.61	48.55	51.11	51.86	46.19	33.05	19.86	6.74	13.73	4.08	6.07	10.33
15	ER3a	ExonRegion	0	9.49	5.16	3.85	17.76	11.39	6.68	2.59	5.00	0.48	8.25	5.78	2.47	1.86	10.50	3.20	6.15	5.72	7.41	8.41	10.44	11.21	6.95	22.73	3.07	2.86	3.82	4.71	5.59	5.94
16	ER3b	ExonRegion	0	141.60	92.58	95.73	283.68	130.76	137.85	78.03	80.38	19.05	180.08	146.81	64.65	48.19	158.84	59.19	106.90	118.39	152.70	206.66	117.45	183.00	106.48	319.99	57.36	65.85	83.40	126.48	128.00	82.05
17	E3_Da	NovelBoundary	0	2.36	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E3a_E4a	KnownJunction	1	176.48	123.32	100.18	315.77	141.18	166.71	77.07	94.70	29.57	221.14	134.83	87.77	48.24	226.13	95.67	155.29	176.11	253.78	356.07	157.96	192.49	139.39	354.06	108.62	89.52	99.17	151.58	220.30	121.98
19	E3a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	6.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	7.37	3.82	1.26	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4a	ExonRegion	1	151.83	113.51	119.26	348.25	162.97	142.07	74.82	110.62	23.39	197.32	115.35	86.89	56.80	184.03	65.30	113.51	149.61	169.07	250.25	131.80	161.89	132.95	351.06	79.24	78.32	122.39	148.33	208.21	103.31
22	E4a_E5a	KnownJunction	1	121.39	82.89	80.43	288.60	130.87	114.87	55.04	100.48	19.89	145.16	64.50	73.85	48.88	131.90	52.02	48.50	101.49	112.76	121.39	125.12	87.28	68.70	273.78	65.50	63.31	88.62	100.39	142.43	60.12
23	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	6.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER5a	ExonRegion	1	80.06	87.68	75.04	310.12	103.45	84.26	40.31	54.59	22.06	131.74	93.37	60.15	33.50	115.02	62.59	65.21	102.81	97.84	189.59	90.95	114.75	67.93	221.45	67.67	55.66	54.35	121.86	132.10	49.63
25	E5a_E6a	KnownJunction	1	83.11	85.12	65.73	312.54	174.64	79.77	42.28	47.23	42.30	134.46	91.61	63.82	33.76	118.74	62.79	73.59	112.16	126.38	169.94	91.30	86.16	66.51	220.39	80.09	60.20	61.02	85.58	124.95	75.24
26	ER6a	ExonRegion	0	84.79	92.76	57.60	277.16	120.25	95.06	57.00	48.47	26.06	126.51	112.28	66.89	37.38	115.42	63.42	67.50	115.90	122.16	221.68	123.47	123.55	71.48	198.53	79.59	63.64	50.53	89.27	117.80	62.44
27	E6_Da	NovelBoundary	0	5.49	4.07	0.00	0.00	7.37	1.92	2.69	0.00	1.89	0.00	0.00	1.69	0.00	1.04	18.34	7.65	1.04	4.62	16.18	0.00	2.05	0.00	0.00	0.00	3.86	0.00	3.88	0.00	0.00
28	E6a_E7a	KnownJunction	1	98.68	106.45	64.11	194.99	83.26	75.24	63.62	55.49	16.14	94.91	89.40	62.68	23.21	98.51	34.28	81.62	100.10	84.76	145.66	97.92	105.65	78.18	169.32	56.59	30.91	64.59	136.97	133.94	45.95
29	I6_AR1	ActiveIntronRegion	0	2.95	0.95	0.49	2.37	0.00	2.29	1.19	0.00	0.00	3.64	2.72	2.12	0.38	0.80	0.00	1.78	1.32	4.07	3.77	0.81	1.13	0.53	0.53	0.63	0.84	0.00	4.32	1.86	0.00
30	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.83	0.00	3.60	0.00	0.00	0.00	1.06	0.00	0.00	4.12	4.62	0.00	0.00	0.00	0.00	2.07	0.00	0.00	0.00	0.00	0.00	0.00
31	ER7a	ExonRegion	0	89.13	81.14	62.54	271.56	115.62	77.67	61.21	85.31	27.04	116.88	86.71	66.79	39.24	117.13	53.98	61.25	102.61	98.53	182.39	99.05	118.41	85.73	237.11	64.40	54.33	73.10	102.69	122.18	82.79
32	E7_Da	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	1.50	0.00	0.00	8.13	5.27	0.00	1.51	1.56	1.06	0.00	0.00	1.19	13.87	16.18	0.00	4.01	3.89	2.51	0.00	0.00	0.00	0.00	2.29	0.00
33	E7a_E8a	KnownJunction	1	61.82	95.59	58.20	517.01	173.31	119.63	62.94	76.84	44.61	163.42	95.13	80.63	37.67	117.96	59.00	75.27	92.06	98.25	299.42	94.36	145.24	84.69	231.38	63.64	73.00	71.19	155.95	126.44	98.45
34	I7	Intron	0	1.49	2.04	0.06	5.25	3.20	1.27	2.26	0.71	1.97	2.12	2.39	0.67	0.65	0.98	4.33	2.17	1.55	5.82	10.48	0.58	2.92	0.62	1.19	1.41	0.44	0.61	2.33	1.19	0.70
35	I7_SR1	SilentIntronRegion	0	1.49	2.05	0.06	5.27	3.21	1.28	2.26	0.71	1.97	2.12	2.39	0.67	0.65	0.98	4.34	2.18	1.56	5.83	10.50	0.58	2.92	0.63	1.19	1.41	0.44	0.61	2.34	1.20	0.70
36	E8_Aa	NovelBoundary	0	3.01	0.00	0.00	10.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.25	8.09	0.00	1.68	0.00	2.07	0.00	0.00	0.00	4.67	0.00	0.00
37	ER8a	ExonRegion	0	53.05	76.05	53.39	295.55	125.70	75.56	55.20	53.70	28.56	88.31	90.88	52.30	32.19	91.07	64.69	44.46	72.02	64.64	152.52	65.72	105.43	49.15	187.64	44.13	47.67	50.06	101.77	87.13	63.51
38	E8_Da	KnownBoundary	0	14.27	9.11	17.32	47.88	34.04	12.78	10.81	6.77	11.66	15.18	23.06	16.17	11.27	20.76	9.77	10.94	17.69	0.00	0.00	22.49	37.98	9.04	48.41	11.36	3.64	15.49	27.53	23.86	6.40
39	E8a_E8b	KnownJunction	1	33.74	27.34	25.61	60.61	20.63	36.53	16.19	16.67	12.79	34.27	13.41	31.08	27.10	42.01	9.37	21.42	49.43	0.00	0.00	27.21	35.94	11.62	44.47	8.61	3.64	20.47	68.48	57.74	22.78
40	E8_Ab	KnownBoundary	0	13.92	9.11	16.10	59.75	6.63	17.80	12.59	9.41	1.34	15.26	11.45	11.93	16.65	22.58	8.57	3.37	16.03	0.00	0.00	11.66	14.68	6.95	29.06	8.25	8.79	2.02	30.46	12.63	15.95
41	ER8b	ExonRegion	0	52.16	56.94	39.27	199.88	66.42	60.49	51.07	33.14	17.60	52.94	48.79	32.16	29.44	69.54	42.94	42.18	50.75	25.47	15.09	59.02	88.91	29.44	147.67	29.40	31.45	35.10	105.62	80.96	39.82
42	ER8c	ExonRegion	0	33.25	85.41	14.91	169.04	100.14	74.53	57.04	21.31	44.02	75.93	45.40	41.71	24.88	65.01	173.56	56.22	72.63	71.54	197.56	97.96	110.21	20.83	95.29	99.14	34.30	26.44	93.16	50.70	45.87
43	IG23_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.26	2.02	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	IG23_AR5	ActiveIntergenicRegion	0	0.00	3.73	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.89	0.00	0.00	3.91	0.87	0.09	0.00	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00