Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C5orf15	Gene	0	519.98	665.58	130.24	915.50	352.85	644.06	708.54	519.15	416.06	354.14	325.06	271.15	248.56	311.95	938.16	756.37	609.66	411.59	547.86	414.92	745.39	385.41	284.01	417.93	543.88	257.11	478.57	134.35	439.21
2	231512	Transcript	0	547.60	183.26	151.34	516.09	156.88	350.20	383.62	766.01	96.28	206.62	172.55	149.42	152.39	195.01	207.92	454.44	355.44	216.97	163.02	207.26	383.80	604.84	208.74	148.82	364.40	444.54	172.27	146.74	367.19
3	451255	Transcript	0	184.03	89.68	0.00	130.49	97.56	73.32	68.94	275.21	16.66	106.18	71.94	27.20	25.19	58.25	72.95	131.27	4.82	5.01	0.00	75.42	70.59	121.83	99.73	67.65	164.31	87.20	52.38	45.20	27.73
4	IG39	Intergenic	0	5.07	1.93	0.70	8.83	0.63	1.47	4.90	3.70	3.51	3.00	1.31	1.92	0.31	1.63	15.10	4.63	10.89	2.02	2.49	3.47	1.11	0.41	0.00	0.84	1.53	1.94	0.83	1.74	0.78
5	IG39_SR1	SilentIntergenicRegion	0	5.08	2.13	0.74	10.08	0.79	1.49	4.70	3.77	2.88	3.02	1.62	2.16	0.39	1.67	16.42	3.90	11.52	2.19	2.31	3.26	1.09	0.43	0.00	0.69	1.44	2.21	0.74	1.70	0.65
6	IG39_AR1	ActiveIntergenicRegion	0	5.35	1.15	0.59	3.84	0.00	1.47	6.11	3.61	6.50	3.09	0.00	0.99	0.00	1.54	10.18	8.16	8.78	1.37	3.42	4.64	1.27	0.32	0.00	1.53	2.04	0.84	1.31	2.03	1.43
7	ER1a	ExonRegion	0	245.00	59.92	121.82	501.60	137.05	214.25	262.94	351.68	44.34	102.90	65.84	78.57	97.38	69.14	109.21	307.48	201.79	110.44	60.16	76.18	233.58	347.34	104.61	34.28	125.41	248.70	110.28	116.98	308.39
8	E1_Da	NovelBoundary	0	10.50	0.00	0.00	0.00	0.00	0.00	0.00	2.54	3.01	0.00	0.00	0.00	0.00	0.00	0.00	3.52	3.42	0.00	0.00	3.31	3.33	1.99	0.00	0.00	0.00	2.19	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	0	671.84	145.62	35.43	175.14	31.10	209.68	182.86	775.15	64.35	98.39	72.41	130.27	120.15	182.11	83.91	217.79	328.64	169.66	96.88	220.56	210.50	753.57	70.62	116.22	176.92	157.71	60.23	33.43	291.67
10	I1	Intron	0	7.23	9.13	2.02	1.37	1.52	6.07	1.11	0.77	5.53	6.70	3.37	2.67	0.70	5.24	4.28	23.85	25.73	10.94	5.12	2.72	9.47	0.80	0.58	2.37	7.13	1.69	0.94	2.40	0.97
11	I1_SR1	SilentIntronRegion	0	8.31	4.62	2.65	0.74	1.01	5.27	0.63	0.67	1.36	4.44	2.36	1.70	0.59	3.77	1.24	12.92	17.98	7.30	2.15	2.55	7.00	0.96	0.74	0.67	3.31	3.18	0.62	3.58	1.04
12	I1_AR1	ActiveIntronRegion	0	12.16	1.90	1.89	0.00	0.00	10.16	3.15	4.40	1.76	12.16	8.52	1.95	0.73	9.00	0.79	31.52	34.22	14.88	0.00	8.74	15.71	1.04	0.17	0.00	8.22	1.99	5.04	5.93	0.00
13	I1_SR2	SilentIntronRegion	0	8.26	8.86	1.98	0.87	2.22	6.42	0.79	0.56	3.06	6.40	4.29	2.58	0.69	5.80	3.18	28.70	26.99	12.60	5.62	2.67	10.32	0.44	0.27	0.85	6.25	1.54	0.61	1.98	0.61
14	I1_AR2	ActiveIntronRegion	0	2.59	12.01	0.76	6.49	0.74	3.53	0.61	1.39	9.98	3.49	1.62	1.49	0.20	1.63	2.39	6.36	9.46	5.95	7.23	0.30	4.95	1.09	0.00	0.97	3.03	1.19	0.00	0.49	0.81
15	I1_SR3	SilentIntronRegion	0	1.31	5.82	0.00	2.15	1.47	1.11	0.04	0.00	3.97	0.97	0.36	0.43	0.00	2.80	3.99	6.54	3.58	2.47	3.70	0.74	2.16	0.56	0.13	3.04	5.57	0.00	0.90	0.98	1.20
16	I1_AR3	ActiveIntronRegion	0	1.71	8.44	0.00	0.00	0.00	4.66	0.77	0.75	10.83	2.80	0.48	0.67	1.32	2.47	9.54	23.36	12.19	7.12	8.00	0.11	6.94	0.71	0.56	7.25	9.91	0.00	2.51	1.33	0.00
17	I1_AR4	ActiveIntronRegion	0	2.13	14.55	1.00	0.00	0.00	6.11	0.80	0.00	9.81	9.35	2.60	2.14	0.43	3.59	12.09	29.57	25.84	14.33	9.14	2.19	9.99	1.07	0.36	4.10	8.33	0.62	1.09	1.71	0.80
18	I1_SR4	SilentIntronRegion	0	4.10	9.08	1.46	0.00	0.04	5.24	0.97	0.10	9.86	4.94	4.43	2.45	0.73	4.06	4.83	16.56	19.37	15.86	4.45	4.96	8.25	2.24	0.01	4.16	10.32	1.06	2.28	0.91	1.29
19	I1_AR5	ActiveIntronRegion	0	11.39	17.43	3.69	1.96	2.64	10.27	4.12	1.70	15.28	15.68	4.82	7.39	1.66	11.04	9.75	46.06	61.60	16.47	6.32	5.08	17.51	1.17	2.18	9.45	19.21	1.30	2.07	4.06	2.63
20	I1_SR5	SilentIntronRegion	0	5.27	4.80	2.65	3.51	0.00	4.95	0.00	0.63	13.21	11.78	3.28	5.39	0.21	7.07	13.55	25.21	23.10	12.83	6.52	5.17	8.27	0.04	1.59	4.95	9.29	1.23	1.10	0.68	0.00
21	E2_Aa	NovelBoundary	0	6.02	13.09	7.35	10.78	0.00	29.73	10.53	0.00	15.29	16.30	3.67	8.64	1.97	15.80	32.49	84.30	99.22	4.62	0.00	0.00	12.55	2.38	1.97	21.77	15.65	0.00	0.00	4.58	11.88
22	ER2a	ExonRegion	0	1129.18	382.05	75.99	465.05	162.12	978.35	988.15	1757.95	237.19	491.78	345.36	269.47	363.31	361.82	444.01	1173.84	629.06	472.53	315.60	407.87	1070.42	1476.51	487.43	281.09	814.67	1527.39	280.69	429.81	948.73
23	E2_Ab	KnownBoundary	0	740.92	553.49	116.88	734.43	274.41	1174.62	1831.33	1094.35	306.90	834.30	583.88	451.59	558.58	425.03	896.54	1772.17	979.00	602.85	598.62	356.19	1153.90	680.30	665.26	280.18	1082.34	1529.76	682.15	738.13	1654.14
24	ER2b	ExonRegion	0	643.34	364.62	220.38	580.34	309.41	474.20	787.18	879.99	155.37	526.76	456.46	364.66	316.36	405.65	473.87	748.43	823.35	398.72	342.08	298.36	487.74	451.69	485.24	269.22	755.32	885.44	614.38	495.40	995.46
25	E2_Da	KnownBoundary	0	764.63	340.78	390.09	1099.81	606.73	399.48	318.69	1134.96	133.44	371.17	286.58	278.19	174.09	409.81	462.22	531.13	754.40	343.04	339.43	370.33	392.36	482.72	344.80	322.41	700.76	460.30	378.94	215.18	318.38
26	E2a_E2c	KnownJunction	0	184.03	89.68	0.00	130.49	97.56	73.32	68.94	275.21	16.66	106.18	71.94	27.20	25.19	58.25	72.95	131.27	4.82	5.01	0.00	75.42	70.59	121.83	99.73	67.65	164.31	87.20	52.38	45.20	27.73
27	ER2c	ExonRegion	0	679.12	325.44	521.24	1416.74	454.15	332.23	476.08	941.58	127.67	338.58	376.75	268.79	181.09	361.98	385.64	568.03	614.71	326.79	342.45	328.88	400.22	446.76	381.05	312.53	699.27	288.90	402.83	153.50	287.16
28	E2_Ac	KnownBoundary	0	684.17	508.70	403.85	1411.49	372.85	375.47	738.19	846.12	224.83	447.75	438.90	269.18	205.71	377.35	494.71	774.40	635.77	487.01	517.69	318.81	485.54	505.77	517.22	355.00	824.95	291.22	440.92	167.64	360.44
29	ER2d	ExonRegion	0	694.36	665.05	205.06	1038.07	311.57	437.87	617.14	788.06	240.59	379.87	416.47	336.75	231.95	400.84	543.57	772.31	683.90	492.62	532.36	421.14	575.63	508.05	420.18	382.87	825.85	285.72	474.59	159.35	376.86
30	E2_Db	NovelBoundary	0	5.43	0.00	1.54	0.00	0.00	5.37	2.86	4.58	3.87	1.48	3.23	1.30	0.00	4.52	16.74	7.34	10.67	0.00	0.00	3.47	9.15	0.00	0.00	0.00	5.46	3.35	0.00	1.93	5.32
31	E2b_E3a	KnownJunction	0	849.10	799.45	205.52	1932.39	400.70	782.78	845.01	624.46	338.51	528.64	499.48	369.00	283.80	500.23	834.55	862.14	668.89	611.07	703.37	559.21	1052.42	587.05	432.26	592.53	941.45	274.74	911.60	181.21	468.20
32	I2	Intron	0	11.57	4.85	1.30	1.86	0.51	3.92	0.73	2.29	4.10	3.15	2.66	1.63	1.68	3.78	14.12	8.63	11.39	5.35	11.44	3.56	8.44	0.47	0.94	3.35	6.45	1.39	3.99	2.20	1.60
33	I2_SR1	SilentIntronRegion	0	0.27	0.00	0.00	0.00	0.00	1.37	0.00	0.23	1.12	0.54	0.00	0.00	0.32	0.11	10.50	0.32	0.00	0.00	0.57	0.00	0.00	0.00	0.00	0.00	0.36	0.20	0.00	0.82	0.00
34	I2_AR1	ActiveIntronRegion	0	8.57	2.87	0.00	0.00	0.00	6.87	0.00	1.84	3.37	4.33	0.00	0.00	3.90	0.91	28.00	2.53	0.00	0.00	4.53	0.00	1.43	0.00	1.81	0.00	1.43	1.57	0.00	6.52	1.34
35	I2_SR2	SilentIntronRegion	0	10.60	3.54	1.23	2.21	0.60	3.98	0.62	2.02	3.64	3.33	2.20	1.48	1.67	3.66	13.03	8.42	11.57	5.04	10.76	2.40	8.76	0.44	0.76	2.91	6.75	1.53	2.59	2.34	1.71
36	I2_AR2	ActiveIntronRegion	0	18.62	13.38	1.90	0.00	0.00	3.64	1.52	4.17	7.20	2.18	5.84	2.79	1.71	4.95	20.49	10.99	11.84	8.01	16.90	11.18	7.53	0.68	2.05	6.50	5.40	0.59	13.15	1.23	1.01
37	E3_Aa	NovelBoundary	0	26.25	12.60	1.35	0.00	0.00	5.41	5.15	0.00	8.77	1.64	3.89	2.71	2.87	4.12	35.68	33.05	40.31	38.14	16.18	4.13	9.23	3.89	0.00	8.02	23.60	9.74	37.92	1.80	2.91
38	ER3a	ExonRegion	0	501.91	855.17	93.84	999.47	417.64	792.61	824.46	397.49	575.45	392.50	356.74	298.57	281.35	340.67	1288.51	846.26	677.96	467.65	698.05	503.17	912.42	305.32	272.63	534.30	551.75	153.40	573.04	99.10	436.41
39	ER3b	ExonRegion	0	12.86	3.28	2.24	21.94	0.00	16.50	8.06	3.68	7.86	1.44	2.38	0.00	0.00	0.00	16.80	5.06	3.01	5.46	0.00	2.81	4.28	0.00	0.00	0.00	5.72	0.00	7.33	0.00	0.00
40	IG38_AR9	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	67.23	0.00	7.59	1.00	0.00	0.00	0.00	0.00	0.00	0.00	4.30	2.86	0.00	0.00	0.00	0.00
41	IG38_AR8	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	65.01	0.00	10.12	0.33	0.00	0.00	0.00	0.00	0.00	0.00	4.30	0.48	0.00	0.00	0.00	0.00
42	IG38_AR7	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	62.45	0.00	8.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.96	1.43	0.00	0.00	0.00	0.00
43	IG38_AR6	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	58.44	0.00	8.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.45	1.43	0.00	0.00	0.00	0.00
44	IG38_SR6	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	53.86	0.00	6.62	0.00	0.00	1.04	0.00	0.00	0.00	0.00	5.46	1.43	0.00	0.00	0.00	0.00
45	IG38_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	27.40	0.00	3.77	0.00	0.00	3.05	0.00	0.00	0.00	0.00	2.02	0.41	0.00	0.00	0.00	0.00
46	IG38_SR5	SilentIntergenicRegion	0	1.35	0.11	0.00	0.70	0.00	0.00	0.20	0.00	0.00	0.28	0.00	0.00	0.00	44.92	0.45	11.88	0.29	0.00	0.31	0.00	0.00	0.17	0.00	2.82	1.46	0.69	0.36	0.00	0.42
47	IG38_AR4	ActiveIntergenicRegion	0	0.52	0.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	44.27	0.00	5.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.95	0.48	0.00	0.00	0.00	1.67
48	IG38_SR4	SilentIntergenicRegion	0	0.11	0.44	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	48.08	0.85	10.20	0.25	0.00	0.00	0.00	0.24	0.00	0.00	5.06	2.45	0.13	0.00	0.00	1.50
49	IG38_AR3	ActiveIntergenicRegion	0	0.38	0.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	42.90	0.00	10.25	0.27	0.00	0.57	0.00	0.51	0.00	0.00	5.02	3.05	0.00	0.00	0.00	0.72