Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF330	Gene	0	75.41	210.54	132.34	180.81	168.29	153.18	58.90	74.32	210.23	146.69	185.15	151.17	185.81	197.87	111.11	127.44	173.71	164.73	217.75	87.10	97.00	138.86	154.82	191.11	150.21	135.15	203.10	215.12	123.82
2	262990	Transcript	0	97.78	198.19	191.24	217.72	190.59	169.86	61.46	93.46	175.36	177.38	223.09	178.34	203.95	247.27	82.78	139.45	191.33	194.47	212.14	98.31	109.75	170.24	188.95	213.19	192.28	178.71	208.41	272.28	130.39
3	ER1a	ExonRegion	0	57.70	56.76	45.76	124.88	152.63	49.07	33.51	39.33	44.78	34.04	33.71	40.18	72.87	55.75	47.23	50.11	63.05	82.65	49.25	43.36	26.38	111.25	49.22	45.72	44.47	58.68	49.13	50.96	60.54
4	E1_Da	NovelBoundary	0	14.16	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	7.65	6.44	4.62	8.09	12.16	0.00	2.48	0.00	0.00	0.00	0.00	0.00	1.75	0.00
5	E1a_E2a	KnownJunction	0	177.19	152.02	32.21	25.67	37.58	237.50	75.47	110.08	135.57	103.54	78.61	48.70	110.95	132.10	69.36	135.86	49.79	164.78	153.76	164.41	131.20	209.83	93.77	138.23	139.46	87.37	55.36	84.92	47.97
6	Ix	Intron	0	8.15	6.12	1.60	0.90	4.70	8.51	0.84	0.46	0.80	2.78	2.89	1.24	0.08	4.65	1.88	13.69	8.30	14.12	5.21	4.66	4.53	0.53	0.15	1.35	1.97	0.79	0.23	2.86	1.06
7	Ix_AR1	ActiveIntronRegion	0	7.87	5.37	3.39	0.00	4.36	5.84	0.51	0.70	0.69	2.32	1.02	1.27	0.00	4.04	0.59	9.14	4.26	13.40	4.48	4.88	2.96	0.34	0.23	0.91	1.46	1.00	0.23	4.03	0.75
8	Ix_SR1	SilentIntronRegion	0	13.43	6.76	1.32	0.00	3.49	11.04	1.26	0.78	1.93	3.44	3.29	0.69	0.00	5.61	1.81	19.27	7.78	14.20	3.51	3.86	5.30	0.20	0.00	0.29	1.98	0.68	0.00	1.30	2.28
9	Ix_AR2	ActiveIntronRegion	0	6.17	6.39	0.49	1.90	5.45	9.33	0.90	0.16	0.40	2.82	4.02	1.45	0.17	4.70	2.81	14.55	11.34	14.63	6.44	4.86	5.31	0.80	0.16	2.09	2.33	0.69	0.32	2.71	0.77
10	E2_Aa	NovelBoundary	0	13.09	4.85	0.00	0.00	7.07	15.35	2.23	4.38	1.55	1.96	4.40	2.83	0.00	10.06	8.37	17.98	13.19	18.49	24.28	4.13	10.07	2.48	0.00	11.54	3.56	3.35	0.00	4.04	0.00
11	ER2a	ExonRegion	0	92.20	133.51	97.43	63.49	84.69	180.76	75.97	60.96	102.59	160.76	225.36	136.90	175.94	178.10	81.12	148.65	154.08	161.95	176.72	110.02	97.84	111.58	175.93	155.87	153.96	142.96	251.20	235.18	123.37
12	E2_Da	NovelBoundary	0	21.18	9.31	20.33	26.96	20.04	21.18	13.56	8.81	19.09	14.86	22.56	8.46	4.43	13.69	32.29	42.00	16.59	18.49	0.00	30.27	10.91	34.42	4.58	16.27	9.05	0.00	14.36	15.59	1.75
13	E2a_E3a	KnownJunction	1	45.71	139.71	127.36	49.61	112.59	98.41	36.33	62.80	77.01	108.89	182.18	94.22	106.14	170.05	35.28	51.10	102.71	52.40	178.03	90.89	58.28	83.48	141.00	154.92	127.41	84.58	230.05	244.52	87.85
14	Ix	Intron	0	12.01	11.01	2.28	14.64	14.97	12.34	4.99	1.25	7.72	7.01	6.33	4.14	1.22	12.72	9.77	23.04	23.84	20.70	11.27	7.69	6.89	1.45	0.95	7.86	5.53	2.04	2.49	3.08	2.31
15	Ix_AR1	ActiveIntronRegion	0	12.53	9.57	3.27	53.48	65.47	13.33	8.60	3.60	10.79	4.86	4.02	5.76	2.06	10.03	9.29	26.92	21.35	14.63	13.56	7.39	9.63	5.13	1.49	6.51	3.77	3.62	2.16	3.37	2.12
16	Ix_SR1	SilentIntronRegion	0	11.48	13.47	0.00	0.00	5.34	13.86	3.11	1.34	3.95	2.27	1.24	2.83	0.07	18.12	16.00	23.50	27.16	23.47	12.74	7.11	11.72	0.08	1.65	6.33	5.17	0.29	1.39	3.66	1.19
17	Ix_AR2	ActiveIntronRegion	0	11.93	11.22	2.18	6.81	4.27	12.05	4.30	0.73	7.25	7.76	7.14	3.86	1.10	13.05	9.56	22.19	24.25	21.93	10.70	7.80	6.02	0.71	0.79	8.25	5.95	1.79	2.63	2.99	2.42
18	E3a_E4a	KnownJunction	0	37.16	100.54	167.35	209.22	259.23	90.66	26.38	34.54	92.18	90.56	81.97	104.52	85.37	168.55	66.17	108.17	120.24	120.98	97.11	56.15	48.01	68.06	111.21	126.03	89.45	86.73	93.73	114.31	51.17
19	ER3a	ExonRegion	1	52.19	159.32	219.53	155.76	221.93	117.60	33.26	67.29	98.76	116.51	155.84	143.97	134.32	222.09	41.72	91.74	152.66	108.62	150.48	80.10	66.11	95.55	159.04	172.63	132.71	105.61	217.13	227.31	97.84
20	Ix	Intron	0	0.00	0.00	0.00	0.00	6.31	0.89	2.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.98	4.81	0.00	9.12	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00
21	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	6.55	0.92	2.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.10	4.93	0.00	9.48	0.00	0.00	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00
22	E4_Aa	NovelBoundary	0	10.68	13.77	0.00	0.00	7.37	6.79	0.00	0.00	5.54	0.00	1.52	3.28	0.00	2.26	8.37	13.39	8.69	27.87	16.18	2.98	1.93	0.00	0.00	2.99	3.71	0.00	0.00	8.31	3.57
23	ER4a	ExonRegion	0	84.65	157.21	238.73	262.43	276.23	202.75	49.88	63.01	113.51	186.14	220.81	174.28	196.17	285.92	64.21	165.85	168.92	182.16	199.84	94.02	114.65	149.09	177.23	191.48	214.30	160.99	166.21	231.30	109.11
24	E4_Da	NovelBoundary	0	5.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.00	3.77	0.00	14.00	9.07	13.74	0.00	4.13	13.16	0.00	0.00	5.56	4.58	0.00	4.47	0.00	0.00
25	E4a_E5a	KnownJunction	0	124.11	134.47	196.90	370.56	257.02	233.97	51.15	66.54	148.06	222.10	276.87	205.30	197.88	291.36	95.87	197.29	205.22	242.09	258.73	94.61	136.78	146.29	184.74	198.47	218.33	245.86	162.41	277.54	133.14
26	Ix	Intron	0	5.46	6.16	0.61	3.35	7.49	9.72	2.99	0.24	4.49	2.63	3.56	2.61	0.32	6.38	5.03	13.24	9.39	10.78	11.13	5.90	5.08	0.28	0.38	3.80	2.38	0.33	0.76	2.33	0.69
27	Ix_SR1	SilentIntronRegion	0	5.47	6.18	0.61	3.36	7.51	9.74	2.99	0.24	4.50	2.63	3.57	2.62	0.32	6.39	5.04	13.27	9.41	10.81	11.16	5.91	5.09	0.28	0.38	3.81	2.38	0.33	0.76	2.34	0.70
28	E5_Aa	NovelBoundary	0	10.38	0.00	1.15	0.00	0.00	12.74	2.57	2.09	17.08	3.64	4.40	6.17	3.34	10.24	18.34	3.44	8.73	14.64	0.00	0.00	5.94	0.00	2.51	0.00	13.75	0.00	0.00	12.81	0.00
29	ER5a	ExonRegion	0	91.42	201.32	190.93	384.28	291.67	210.38	61.61	100.85	173.64	222.90	331.89	232.86	228.84	301.79	82.54	157.54	205.90	198.85	242.75	98.48	119.30	213.06	233.02	231.79	245.17	205.41	234.50	288.05	122.52
30	E5_Da	NovelBoundary	0	5.43	8.92	0.00	0.00	0.00	5.52	0.00	0.00	1.86	0.00	0.00	2.86	0.00	4.30	0.00	7.04	6.75	18.49	0.00	3.80	5.41	0.00	0.00	3.05	1.63	0.00	0.00	5.80	0.00
31	E5a_E6a	KnownJunction	0	117.97	222.11	184.45	272.20	169.48	170.43	53.50	103.61	167.92	184.95	300.75	216.53	157.41	284.14	106.24	161.11	203.89	147.82	218.27	74.93	114.64	171.57	196.21	220.60	177.30	122.09	142.53	223.04	91.28
32	Ix	Intron	0	3.45	3.21	0.27	3.18	1.25	3.98	1.79	0.34	2.34	2.19	1.86	1.47	0.03	1.98	2.06	5.86	3.69	3.37	4.54	3.26	2.23	0.08	0.21	1.65	1.37	0.26	0.17	2.01	0.36
33	Ix_SR1	SilentIntronRegion	0	2.55	1.89	0.16	2.80	0.48	4.52	1.73	0.00	1.24	2.12	2.21	1.29	0.00	1.45	0.00	4.55	2.44	3.83	4.99	2.39	3.30	0.00	0.00	0.63	1.68	0.00	0.00	1.08	0.46
34	Ix_AR1	ActiveIntronRegion	0	3.79	3.55	0.32	3.33	1.72	3.47	1.34	0.52	3.00	2.07	1.57	1.39	0.05	1.92	2.11	6.58	4.11	3.21	4.34	3.70	1.97	0.13	0.25	1.96	1.11	0.22	0.06	2.32	0.34
35	Ix_AR2	ActiveIntronRegion	0	6.43	9.85	2.24	7.31	0.00	8.25	4.03	0.00	0.00	3.61	1.19	2.47	0.00	3.63	11.20	5.06	4.01	5.46	4.53	2.81	0.00	0.00	0.00	0.00	1.43	0.00	0.92	1.63	1.34
36	Ix_SR2	SilentIntronRegion	0	3.24	3.99	0.13	2.96	0.00	6.07	5.00	0.00	0.56	3.20	3.04	2.46	0.00	3.76	6.64	4.18	3.93	3.31	4.92	2.40	1.42	0.00	0.45	2.14	2.44	1.17	1.34	2.29	0.24
37	E6_Aa	NovelBoundary	0	8.49	7.47	0.00	8.41	6.04	5.49	5.38	0.00	1.83	4.03	3.16	4.25	0.00	3.10	0.00	6.81	4.50	0.00	0.00	4.13	0.00	0.00	0.00	5.80	5.80	0.00	0.00	4.40	1.95
38	ER6a	ExonRegion	0	112.17	209.74	233.75	183.68	184.12	195.60	72.88	113.87	191.54	230.17	282.07	240.28	250.47	323.96	99.75	179.30	260.35	211.20	237.66	98.75	126.20	236.43	238.26	233.59	260.88	247.38	251.76	332.19	143.60
39	E6_Da	NovelBoundary	0	2.83	0.00	1.37	0.00	0.00	1.96	0.00	0.00	0.00	3.71	1.49	2.53	0.00	4.41	7.97	0.00	3.74	13.87	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00
40	E6a_E7a	KnownJunction	0	125.23	284.16	211.88	259.69	161.22	166.94	74.09	116.50	227.66	214.27	362.79	222.65	276.57	311.77	65.58	161.41	246.18	262.13	283.01	109.91	111.87	231.76	254.23	265.70	240.80	242.59	201.87	391.98	148.13
41	E6a_E8a	NovelJunction	0	0.00	0.00	1.37	0.00	0.00	1.61	0.00	0.00	1.55	0.00	10.38	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00	0.00
42	Ix	Intron	0	3.26	1.46	0.55	0.00	1.06	3.00	0.00	0.40	0.24	2.83	1.56	2.08	0.49	2.07	3.61	4.87	2.44	3.15	2.79	0.60	2.64	0.00	0.00	1.88	0.00	1.03	0.20	1.42	0.00
43	Ix_SR1	SilentIntronRegion	0	4.42	2.47	0.00	0.00	1.10	2.31	0.00	0.09	0.00	4.02	1.34	1.74	1.28	2.39	2.85	3.15	2.30	3.27	3.15	0.42	1.99	0.00	0.00	1.82	0.00	2.21	0.36	2.02	0.00
44	Ix_SR2	SilentIntronRegion	0	2.52	0.84	0.91	0.00	0.98	3.44	0.00	0.58	0.41	2.05	1.73	2.34	0.00	1.88	4.20	6.06	2.50	3.10	2.54	0.68	3.12	0.00	0.00	1.96	0.00	0.29	0.07	1.01	0.00
45	E7_Aa	NovelBoundary	0	0.00	4.85	1.99	0.00	0.00	1.46	0.00	0.00	2.68	2.04	1.58	1.17	0.00	3.46	8.17	7.65	1.35	4.62	24.28	0.00	3.65	0.00	0.00	5.44	1.93	0.00	0.00	2.16	0.00
46	ER7a	ExonRegion	0	115.48	270.02	249.85	208.79	176.25	214.48	80.65	123.60	238.69	235.51	304.37	239.71	263.03	309.89	83.53	171.54	267.42	254.67	250.34	111.14	145.59	216.91	274.17	245.37	259.27	259.80	316.14	386.86	163.27
47	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	5.60	3.84	0.00	0.00	2.38	1.72	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00
48	E7a_E8a	KnownJunction	0	87.59	213.78	237.04	171.91	195.86	190.69	77.13	140.79	265.18	230.81	262.09	236.71	294.15	291.43	95.47	171.66	240.35	284.60	258.73	109.08	170.87	218.58	185.97	270.25	228.14	290.87	280.79	390.59	166.85
49	E7a_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00
50	Ix	Intron	0	2.07	2.99	0.54	0.46	0.63	3.62	1.30	0.95	2.20	1.49	2.30	1.43	0.00	2.30	2.84	1.67	0.96	4.89	6.57	0.66	0.92	0.12	0.12	1.94	1.20	0.10	0.00	1.57	0.56
51	Ix_SR1	SilentIntronRegion	0	2.29	2.98	0.59	0.51	0.70	3.87	1.43	1.05	2.26	1.56	2.31	1.55	0.00	2.25	2.90	1.70	1.07	5.00	6.25	0.58	0.83	0.13	0.13	1.98	1.23	0.11	0.00	1.73	0.62
52	Ix_AR1	ActiveIntronRegion	0	0.06	3.52	0.00	0.00	0.00	1.51	0.00	0.00	1.91	0.91	2.47	0.46	0.00	3.14	2.64	1.55	0.00	4.17	10.86	1.57	1.75	0.00	0.00	1.57	1.04	0.00	0.00	0.21	0.00
53	E8_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	3.45	0.00	0.00	6.55	0.00	0.00	1.81	1.62	5.27	0.00	6.58	1.24	0.00	16.18	0.00	5.41	0.00	0.00	5.98	1.59	0.00	0.00	0.00	0.00
54	ER8a	ExonRegion	0	104.30	249.16	261.32	254.54	174.14	162.21	74.67	136.04	218.18	201.42	235.51	230.74	289.68	292.09	85.80	157.61	249.56	241.44	238.04	105.61	139.82	202.60	208.95	271.78	224.34	268.85	223.72	357.05	184.79
55	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	2.04	1.61	0.00	0.00	8.46	9.97	3.06	6.84	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
56	E8a_E9a	KnownJunction	0	110.13	296.47	221.09	319.44	179.65	182.28	89.48	106.30	205.10	203.24	207.24	213.43	241.06	287.50	121.39	117.35	224.48	248.51	275.14	130.09	125.02	186.93	238.96	243.03	266.94	211.40	180.70	353.79	171.11
57	Ix	Intron	0	2.29	5.07	0.15	0.00	1.30	5.50	0.90	0.16	1.74	2.31	1.16	1.04	0.46	3.62	3.51	4.00	1.72	2.77	4.54	1.22	1.52	0.16	0.00	3.63	0.76	0.84	0.00	2.03	0.18
58	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.53	0.00	0.86	1.10	0.91	0.00	0.00	0.00	3.51	0.00	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	Ix_AR2	ActiveIntronRegion	0	4.44	6.11	0.42	0.00	2.47	11.25	1.53	0.46	1.36	2.55	1.81	2.01	0.82	6.05	6.04	6.99	4.05	4.94	7.26	2.30	1.91	0.46	0.00	5.20	1.08	1.98	0.00	4.39	0.00
60	Ix_SR1	SilentIntronRegion	0	1.54	1.38	0.00	0.00	0.00	4.41	0.00	0.00	2.07	2.38	2.00	2.24	0.00	2.82	0.79	5.11	0.33	1.72	8.58	1.73	2.15	0.00	0.00	2.57	1.05	1.27	0.00	1.94	0.00
61	Ix_AR3	ActiveIntronRegion	0	1.33	6.49	0.00	0.00	1.01	2.56	0.42	0.00	2.24	2.44	0.52	0.26	0.40	2.82	2.09	2.42	0.62	2.00	1.99	0.57	1.48	0.00	0.00	3.61	0.64	0.03	0.00	0.68	0.41
62	E9_Aa	NovelBoundary	0	0.00	7.85	1.15	0.00	0.00	5.76	0.00	0.00	0.00	7.67	6.39	0.00	0.00	1.04	0.00	0.00	1.04	0.00	16.18	0.00	0.00	0.00	0.00	5.32	0.00	0.00	6.61	2.29	1.52
63	ER9a	ExonRegion	0	126.59	296.53	281.48	352.56	236.58	193.26	72.11	127.19	242.71	234.12	323.09	255.19	309.09	338.50	111.35	171.57	277.48	258.21	281.48	110.95	121.82	229.94	303.68	326.83	267.68	241.35	323.67	393.79	216.53
64	E9_Da	NovelBoundary	0	2.48	14.54	0.00	0.00	0.00	3.26	0.00	0.00	1.89	0.00	0.00	1.20	0.00	0.00	9.57	3.21	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	1.70	0.00	0.00	0.00	0.00
65	E9a_E10a	KnownJunction	0	136.73	246.35	344.10	308.87	298.13	181.90	72.78	139.44	319.96	261.76	217.58	219.66	312.07	285.64	78.13	132.11	280.85	321.72	234.23	100.56	134.41	243.82	240.63	364.28	244.70	235.47	381.13	409.28	239.25
66	Ix	Intron	0	1.05	2.04	0.57	0.70	0.24	4.56	0.30	0.36	0.98	1.27	0.35	0.54	0.13	1.96	3.72	2.23	1.17	3.12	3.74	1.21	1.32	0.00	0.09	2.52	0.35	0.84	0.45	1.19	0.00
67	Ix_AR1	ActiveIntronRegion	0	2.19	3.51	0.59	0.00	0.56	5.98	0.46	0.84	1.23	2.22	0.59	0.72	0.00	3.18	3.23	2.89	1.57	4.88	6.76	1.84	1.15	0.00	0.21	2.86	0.73	0.18	0.43	2.67	0.00
68	Ix_SR2	SilentIntronRegion	0	0.43	0.41	0.32	1.37	0.00	3.08	0.39	0.00	1.15	0.71	0.23	0.68	0.50	0.33	5.45	2.07	1.49	1.89	2.14	1.14	1.68	0.00	0.00	4.04	0.00	3.00	0.00	0.21	0.00
69	E10_Aa	NovelBoundary	0	2.83	0.00	1.10	0.00	0.00	5.87	0.00	2.54	1.22	0.00	0.00	3.40	0.00	1.97	0.00	10.94	0.00	4.62	0.00	0.00	0.00	0.00	0.00	8.97	3.86	0.00	0.00	9.88	0.00
70	ER10a	ExonRegion	0	59.21	242.36	92.42	159.04	152.24	148.38	56.92	63.05	268.72	128.51	156.05	132.64	173.01	167.56	142.10	119.54	162.08	150.22	247.02	84.93	96.38	107.77	123.90	194.07	118.01	97.48	197.71	180.57	119.05