Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GAR1	Gene	0	61.69	235.75	144.87	133.54	148.07	203.99	58.43	48.54	264.30	199.47	209.30	216.28	371.97	102.73	49.37	76.33	134.81	143.52	239.31	27.46	198.74	86.41	296.71	147.95	131.89	264.97	415.95	347.56	205.48
2	226796	Transcript	1	43.18	70.02	124.37	127.70	226.54	145.17	36.71	18.77	135.91	161.48	171.25	200.59	297.65	62.47	16.01	44.53	153.77	111.40	106.68	15.16	173.96	76.83	426.74	67.45	94.93	496.21	623.94	574.30	311.88
3	394631	Transcript	1	14.33	42.66	27.31	31.49	185.39	14.23	4.35	3.88	15.13	28.36	16.48	4.55	36.40	4.56	0.00	17.14	10.71	28.51	24.28	0.00	3.93	20.22	42.55	10.41	8.26	62.05	38.76	240.25	18.59
4	IG39_SR3	SilentIntergenicRegion	0	1.30	1.96	0.00	0.00	7.29	0.00	0.62	0.00	1.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	1.09	1.10	0.00	0.00	0.95	0.72	1.94	0.00
5	ER1a	ExonRegion	1	18.76	33.12	50.24	90.19	113.05	45.94	13.61	8.54	17.07	52.34	62.98	71.19	86.93	21.47	5.45	17.93	49.03	43.59	49.66	4.14	37.56	15.07	169.73	18.58	17.19	170.13	257.43	211.63	125.64
6	E1_Da	KnownBoundary	0	26.07	35.48	85.28	176.65	131.75	102.48	36.62	16.87	29.87	73.34	124.29	150.39	167.95	36.65	7.57	31.98	105.59	84.25	153.76	9.10	87.08	14.24	380.06	38.64	36.86	385.24	605.41	280.78	289.43
7	E1a_E2a	KnownJunction	1	14.33	42.66	27.31	31.49	185.39	14.23	4.35	3.88	15.13	28.36	16.48	4.55	36.40	4.56	0.00	17.14	10.71	28.51	24.28	0.00	3.93	20.22	42.55	10.41	8.26	62.05	38.76	240.25	18.59
8	E1a_E3a	NovelJunction	0	0.00	6.98	1.47	0.00	0.00	0.00	2.80	0.00	9.99	1.76	1.33	0.00	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	2.51	2.51	0.00	0.00	5.96	12.31	1.91
9	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1b	ExonRegion	1	58.52	83.12	117.01	113.90	81.71	222.00	42.19	20.82	186.21	200.48	229.21	257.93	286.85	99.43	24.05	67.40	214.24	104.39	116.26	19.98	254.35	59.49	537.74	81.01	91.97	626.05	688.88	604.04	462.38
11	E1_Db	NovelBoundary	0	0.00	0.00	1.47	0.00	0.00	1.96	0.00	0.00	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.31	13.87	0.00	0.00	9.83	0.00	0.00	2.99	0.00	1.76	0.00	0.00	3.07
12	E1b_E2a	KnownJunction	1	27.84	56.91	131.73	141.49	371.38	68.33	31.24	16.72	85.60	122.47	113.28	143.25	308.44	25.50	7.97	21.65	93.30	118.41	97.11	10.34	93.58	94.17	315.74	53.89	97.90	366.36	559.00	544.57	161.37
13	E1b_E3a	NovelJunction	0	0.00	13.38	1.54	0.00	46.13	0.00	2.75	2.34	38.86	9.55	6.71	2.77	14.30	1.04	0.00	0.00	5.83	0.00	0.00	0.00	9.99	4.96	7.24	3.05	0.00	3.65	12.28	31.86	3.70
14	I1	Intron	0	0.32	3.88	0.50	4.31	2.94	0.41	0.61	0.55	3.20	0.65	0.90	0.93	2.24	0.61	0.00	0.37	3.14	2.61	0.48	0.00	3.22	0.81	1.36	0.65	0.65	2.36	1.10	5.15	1.81
15	I1_AR1	ActiveIntronRegion	0	0.56	5.58	0.87	5.89	5.03	0.70	1.05	0.60	4.22	1.13	1.09	1.27	2.84	0.24	0.00	0.65	3.51	2.72	0.84	0.00	4.98	1.41	2.36	1.13	1.12	3.68	1.89	6.90	2.84
16	I1_SR1	SilentIntronRegion	0	0.00	1.47	0.00	2.35	0.00	0.03	0.00	0.52	1.92	0.00	0.67	0.47	1.43	1.20	0.00	0.00	2.84	2.65	0.00	0.00	0.84	0.00	0.00	0.00	0.00	0.60	0.00	2.83	0.42
17	E2_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	0.00	0.00	7.61	0.00	0.00	0.00	1.48	0.00	0.86	7.97	0.00	5.20	9.25	0.00	0.00	0.00	0.00	0.00	10.71	1.93	0.00	0.00	2.29	0.00
18	ER2a	ExonRegion	0	40.53	115.26	217.83	200.65	219.50	93.83	28.20	29.51	111.25	115.44	86.59	125.13	258.93	46.91	14.40	48.27	80.62	124.99	152.82	14.49	89.01	72.75	176.71	74.05	73.89	172.02	231.19	272.05	129.26
19	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.59	0.00	0.00	1.37	0.00	10.40	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E2a_E3a	KnownJunction	0	46.66	292.11	198.70	221.08	188.78	251.65	66.60	31.50	341.04	311.34	278.80	232.47	590.97	89.56	43.25	84.84	183.92	201.51	452.95	26.13	239.86	42.64	241.03	161.86	138.13	222.81	274.08	380.08	261.47
21	I2_AR1	ActiveIntronRegion	0	1.80	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	0.00	2.37	0.00	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3_Aa	NovelBoundary	0	0.00	0.00	2.84	0.00	7.07	1.96	0.00	0.00	1.67	4.07	1.17	4.61	0.00	0.00	0.00	0.00	1.13	4.62	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	2.11	0.00
23	ER3a	ExonRegion	0	71.14	403.85	174.25	135.87	171.17	313.11	76.00	51.60	408.22	280.68	239.28	213.77	502.27	98.82	51.74	95.32	129.34	203.49	366.07	34.96	291.51	91.15	294.91	228.52	199.50	208.45	435.31	347.65	199.10
24	E3_Da	NovelBoundary	0	2.48	0.00	0.00	0.00	0.00	1.73	0.00	0.00	0.00	3.71	0.00	3.04	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E3a_E4a	KnownJunction	0	82.05	548.25	223.59	220.22	437.10	465.86	124.56	70.12	673.94	453.58	347.76	301.92	717.55	136.04	93.88	113.68	178.68	246.46	388.44	17.95	446.51	77.30	448.47	267.85	264.67	274.99	747.95	436.73	428.32
26	I3_SR1	SilentIntronRegion	0	0.00	2.76	0.00	0.00	2.39	0.60	0.00	0.00	0.54	1.85	0.00	0.49	0.99	0.51	2.69	1.52	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.17	0.11	0.00	0.59	0.59	0.38
27	I3_SR2	SilentIntronRegion	0	0.50	0.92	0.19	0.83	2.60	3.94	0.23	0.64	2.48	1.72	0.00	1.46	2.32	0.23	2.79	1.01	0.70	1.42	0.35	0.96	1.24	0.42	0.00	0.48	0.81	0.73	2.68	0.89	0.20
28	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	3.11	0.00	0.00	0.00	0.00	0.00	8.37	0.00	0.00	0.00	0.00	0.00	3.93	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
29	ER4a	ExonRegion	0	66.55	542.12	217.59	209.02	388.56	368.14	114.76	71.74	530.04	365.25	354.26	345.15	618.50	121.47	76.82	113.76	202.73	220.52	533.52	45.39	356.48	96.06	410.57	245.84	228.34	250.65	907.43	438.34	311.20
30	E4_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	7.37	3.53	0.00	0.00	0.00	1.76	0.00	1.87	1.46	3.97	0.00	9.79	5.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4a_E5a	KnownJunction	0	74.68	603.13	199.62	222.81	439.61	360.81	152.19	68.93	517.66	302.91	377.18	298.91	467.38	98.84	52.82	132.34	154.66	251.72	807.90	54.99	360.55	113.57	359.37	198.59	193.86	236.03	890.33	462.70	177.41
32	I4_AR1	ActiveIntronRegion	0	2.39	1.96	0.85	1.45	1.48	1.81	0.00	0.00	0.57	0.73	1.93	0.81	1.18	1.88	0.93	3.44	1.06	5.30	1.62	0.56	1.73	0.73	0.91	0.22	0.87	0.64	0.00	0.99	0.61
33	I4_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.40	0.00	0.00	0.00	0.00	0.00	3.48	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00
34	I4_AR3	ActiveIntronRegion	0	1.11	2.63	0.00	0.00	0.00	4.52	0.35	0.00	1.55	0.50	0.82	0.17	0.98	0.86	1.75	2.14	1.29	2.33	6.44	0.95	1.23	0.00	0.00	2.14	0.00	0.82	0.00	1.41	0.00
35	E5_Aa	NovelBoundary	0	5.43	17.26	1.49	0.00	0.00	4.95	0.00	0.00	1.22	0.00	0.00	2.68	4.49	2.10	0.00	0.00	4.32	0.00	0.00	3.56	4.57	0.00	1.87	5.62	4.77	1.89	0.00	2.29	0.00
36	ER5a	ExonRegion	0	74.19	296.89	211.63	188.17	245.22	263.87	81.13	83.11	265.41	231.90	223.15	188.05	383.00	87.83	61.53	72.73	93.36	162.56	305.91	25.36	233.47	118.33	277.67	198.48	162.33	164.80	387.77	247.31	88.10
37	E5_Da	NovelBoundary	0	0.00	0.00	1.15	0.00	0.00	3.91	2.92	0.00	1.37	1.60	1.33	0.00	0.00	3.37	0.00	11.47	3.62	4.62	0.00	0.00	0.00	0.00	0.00	3.05	3.26	0.00	0.00	0.00	0.00
38	E5a_E6a	KnownJunction	0	46.66	89.39	35.23	71.18	88.57	105.17	59.62	26.97	144.83	108.97	91.42	71.23	165.72	51.00	34.68	28.38	30.57	46.23	121.39	23.32	120.21	55.52	113.27	109.52	69.90	102.44	199.73	64.21	29.35
39	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	I5	Intron	0	3.75	14.05	1.63	5.83	2.78	4.64	3.28	1.72	10.87	3.46	2.18	2.68	3.36	4.83	6.80	6.30	7.76	5.81	6.88	3.09	3.71	0.51	0.51	5.68	2.85	0.45	0.30	2.05	1.30
41	I5_AR1	ActiveIntronRegion	0	2.62	10.17	0.44	4.90	0.56	5.97	3.54	0.00	10.00	3.00	1.02	2.07	1.23	2.19	0.16	4.18	7.89	5.75	7.03	3.01	2.83	0.51	0.52	3.44	1.68	0.00	0.00	2.02	0.53
42	I5_AR2	ActiveIntronRegion	0	6.07	20.57	2.14	5.05	3.44	15.65	9.79	0.26	13.86	3.40	0.45	3.77	5.85	3.24	18.14	14.16	17.96	7.86	15.73	11.91	3.53	1.80	0.00	8.35	1.43	0.00	0.00	1.44	1.73
43	I5_SR1	SilentIntronRegion	1	2.37	18.15	0.00	4.62	0.00	4.49	9.12	1.84	19.87	1.75	1.19	2.47	5.20	3.63	20.04	8.39	14.60	11.92	1.43	16.12	1.65	0.85	0.00	0.68	0.75	0.00	0.00	2.92	0.00
44	I5_SR2	SilentIntronRegion	0	1.63	12.72	0.53	7.06	0.00	3.38	3.04	2.01	7.77	2.27	0.63	1.34	1.64	2.19	0.00	3.64	5.23	6.84	3.12	1.00	2.00	0.00	0.33	5.44	1.30	0.00	0.00	1.26	0.65
45	I5_AR3	ActiveIntronRegion	0	7.14	16.42	2.24	14.63	3.32	6.87	4.03	3.68	7.21	7.22	1.79	6.08	3.90	7.63	0.00	2.53	6.59	2.96	2.26	0.70	2.85	0.00	2.56	15.06	2.86	0.00	0.31	3.12	2.68
46	I5_AR4	ActiveIntronRegion	0	4.56	16.47	2.42	7.36	3.48	4.46	3.13	2.64	12.00	4.13	3.25	3.26	4.07	6.78	7.67	7.11	8.69	5.79	6.63	2.64	4.33	0.64	0.56	6.42	3.46	0.67	0.39	2.47	1.78
47	I5_SR3	SilentIntronRegion	0	2.68	8.90	0.54	0.00	5.05	2.86	1.63	0.00	9.14	2.74	0.73	1.35	3.17	1.88	12.15	5.46	3.05	4.66	9.63	3.41	4.36	0.00	0.65	4.88	2.15	0.57	0.03	0.71	0.71
48	I5_AR5	ActiveIntronRegion	0	0.87	2.68	0.00	0.00	0.00	0.00	1.46	0.00	3.06	0.00	0.00	1.15	1.59	1.01	3.32	2.58	1.15	3.49	5.03	0.00	0.61	0.00	0.00	3.78	4.87	0.00	1.66	1.24	0.02
49	E6_Aa	NovelBoundary	0	0.00	8.43	1.54	42.71	0.00	8.17	0.00	3.78	9.26	5.31	4.84	0.00	4.30	9.06	8.37	6.12	5.00	9.25	8.09	3.47	2.05	1.80	0.00	0.00	3.67	0.00	2.24	3.82	0.00
50	ER6a	ExonRegion	0	61.45	249.70	120.89	102.48	88.95	198.85	75.81	67.99	249.91	200.04	208.68	217.78	396.71	109.28	72.00	90.96	100.22	164.82	285.78	24.60	169.10	117.73	269.93	169.60	159.59	173.33	385.05	266.92	107.82
51	E6_Da	NovelBoundary	0	0.00	22.49	0.00	0.00	0.00	1.96	0.00	0.00	2.62	1.52	0.00	0.00	0.00	4.14	9.97	18.21	1.13	9.25	0.00	3.56	0.00	0.00	0.00	2.87	1.67	0.00	0.00	0.00	0.00
52	E6a_E7a	KnownJunction	0	93.79	433.66	182.80	197.36	196.45	255.64	87.65	96.40	402.83	346.45	359.72	428.94	668.25	196.62	128.56	179.24	227.48	265.85	517.92	40.03	228.91	191.60	386.91	249.97	227.42	298.94	648.20	618.12	220.30
53	I6	Intron	0	1.23	3.71	0.00	0.00	0.00	2.18	1.45	0.53	4.44	0.83	2.06	0.53	0.56	1.30	1.46	3.93	3.87	3.15	3.68	2.79	2.47	0.00	0.26	2.48	0.41	0.23	0.00	0.94	0.19
54	I6_SR1	SilentIntronRegion	0	0.00	8.88	0.00	0.00	0.00	1.58	1.69	0.00	0.00	0.00	0.00	0.43	0.04	2.75	2.27	2.70	3.82	4.20	3.98	3.11	0.00	0.00	0.00	5.17	0.99	1.08	0.00	1.12	0.00
55	I6_AR1	ActiveIntronRegion	0	1.57	2.36	0.00	0.00	0.00	2.35	1.40	0.68	5.65	1.06	2.62	0.57	0.70	0.92	1.25	4.27	3.91	2.89	3.63	2.72	3.14	0.00	0.33	1.78	0.26	0.00	0.00	0.90	0.25
56	E7_Aa	NovelBoundary	0	0.00	11.73	1.54	10.78	0.00	0.00	0.00	0.00	4.11	0.00	1.58	0.00	0.00	5.23	7.18	6.81	4.28	0.00	0.00	11.91	5.74	0.00	0.00	10.77	0.00	0.00	0.00	0.00	0.00
57	ER7a	ExonRegion	0	73.12	298.57	73.79	73.70	68.13	175.74	65.11	63.64	347.01	189.55	248.82	252.77	433.58	157.91	83.16	92.27	134.20	142.98	265.34	39.92	165.63	100.93	193.77	184.63	147.87	142.53	260.01	252.80	116.22
58	IG40_SR1	SilentIntergenicRegion	0	0.00	2.65	0.08	0.00	0.00	3.20	0.00	0.00	0.55	0.00	1.02	1.85	3.07	0.39	0.00	0.00	0.56	0.00	4.11	0.00	0.61	0.00	1.55	1.34	0.00	0.00	0.00	1.40	0.01